Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017236

Physical Location & Seq

Genomic Coordinates Reverse (-)

8593459 .. 8594565

Gene Structure 1107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22731

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCCTTGCAGGCTCTCAACTCCCCAAACACCGCCTCTCTCGGCGGCTTCGAAGAGGCGGAGCCTAACCGCAACATGAACCACCACCTCGCCGCGAAACGTAAGCGCTCCAAGAGGCCGCGCTTCGAGGACTCGCTTTCCGAAGAGGAGTACATGGCTTTCTGTCTTCTCTTGCTTGCTCGTGGCGGCACCACCAACGCCACCGACACCACCGCCCAACTGCCGCCGCATCCCCCTGCTGCTTCTTACAGGTGTGTTGTCTGCAGCAAGACTTTCGGCTCCTACCAGGCTCTTGGGGGCCACAAGGCTAGCCACCGTAAGTCTGACGCCACCTCCGCCGTCTCCGCCGTCTCCGCCGCCGTAACCGCCACCGTCAAGACTGAAATCCCCGCTGTCACCGCCGCGAGTGGTGGGAGGACCCACGAGTGCTCCATCTGCCACAAGTGCTTCCCGACCGGGCAGGCCTTGGGAGGACACAAGCGCTGCCACTACGACGGTGGCAGCAGCACCGCCAACAGCGCCGTCACGACTGTTTCCGAAGGCGGCGGTGGATCCTCCAGCCACGGCCAGTGCCAGACTCAGAGCCAGCGTGGGTTCGTACTCGACCTGAACTTGCCTGCTGAGCCGGAAGTGCTACAAGTGTGGACCGGGTTCGACAAGAAGAAGAGTACTCAAGCCTCCGCCGAGCAGGAGGAGGTGCAGAGTCCGATGCCGGAGAAGAAGCCGCGTCTGACATTGGGGCCTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010117 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015979 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0035264 GO:0040007 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048589 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

249

Amino Acids

26.33

Weight (kDa)

8.41

Isoelectric Point (pI)

63.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	83 - 108	2.1e-12	C2H2-type zinc finger
zf-C2H2_6	PF13912	141 - 165	4.7e-10	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04120
malus_domestica	MD05G1098300.v1.1 MD10G1104100.v1.1
prunus_persica	Prupe.8G142400_v2.0.a1
pyrus_communis	pycom05g09620 pycom10g08950
rosa_chinensis	RchiOBHm_Chr6g0253491
rosa_laevigata	RLG00000015015
rosa_multiflora	Rmu_ssc0000079.1_g000007
rosa_rugosa	Rorug05G0544700
rosa_samantha	Rh6AG059700 Rh6BG053700 Rh6CG050800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	188
AccII	CGCG	4 cut(s)	95, 121, 404, 727
AclWI	GGATC	2 cut(s)	546, 559
AcoI	YGGCCR	1 cut(s)	565
AcyI	GRCGYC	1 cut(s)	327
AfaI	GTAC	3 cut(s)	152, 600, 670
AfeI	AGCGCT	2 cut(s)	107, 482
AjnI	CCWGG	1 cut(s)	285
Alw21I	GWGCWC	1 cut(s)	431
Alw26I	GTCTC	2 cut(s)	346, 355
AlwI	GGATC	2 cut(s)	546, 559
Aor51HI	AGCGCT	2 cut(s)	107, 482
AoxI	GGCC	6 cut(s)	3, 116, 298, 462, 565, 740
ApeKI	GCWGC	5 cut(s)	239, 264, 483, 501, 504
AspLEI	GCGC	4 cut(s)	108, 123, 483, 521
AspS9I	GGNCC	4 cut(s)	298, 417, 645, 740
AsuC2I	CCSGG	2 cut(s)	457, 649
AsuHPI	GGTGA	1 cut(s)	388
AsuII	TTCGAA	1 cut(s)	51
AsuNHI	GCTAGC	1 cut(s)	308
AvaII	GGWCC	2 cut(s)	417, 645
BamHI	GGATCC	1 cut(s)	551
BanI	GGYRCC	1 cut(s)	188
BauI	CACGAG	2 cut(s)	180, 422
BbsI	GAAGAC	1 cut(s)	158
Bbv12I	GWGCWC	1 cut(s)	431
BbvI	GCAGC	5 cut(s)	226, 276, 470, 513, 516
BccI	CCATC	1 cut(s)	440
BceAI	ACGGC	5 cut(s)	323, 332, 344, 506, 580
BcgI	CGANNNNNNTGC	2 cut(s)	256, 290
BciT130I	CCWGG	1 cut(s)	287
BcnI	CCSGG	2 cut(s)	457, 649
BcoDI	GTCTC	2 cut(s)	346, 355
BfaI	CTAG	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	262
BfoI	RGCGCY	3 cut(s)	109, 484, 522
BglI	GCCNNNNNGGC	1 cut(s)	11
BlpI	GCTNAGC	1 cut(s)	621
BmcAI	AGTACT	1 cut(s)	670
Bme1390I	CCNGG	3 cut(s)	287, 457, 649
Bme18I	GGWCC	2 cut(s)	417, 645
BmgT120I	GGNCC	4 cut(s)	298, 417, 645, 740
BmiI	GGNNCC	7 cut(s)	63, 190, 280, 299, 419, 553, 741
BmrFI	CCNGG	3 cut(s)	287, 457, 649
BmsI	GCATC	2 cut(s)	238, 699
BmtI	GCTAGC	1 cut(s)	312
BpiI	GAAGAC	1 cut(s)	158
BpmI	CTGGAG	1 cut(s)	541
Bpu1102I	GCTNAGC	1 cut(s)	621
Bpu14I	TTCGAA	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	657
BpuMI	CCSGG	2 cut(s)	457, 649
BsaHI	GRCGYC	1 cut(s)	327
BsaJI	CCNNGG	2 cut(s)	465, 562
BsaXI	ACNNNNNCTCC	4 cut(s)	317, 347, 413, 443
Bse1I	ACTGG	1 cut(s)	568
BseBI	CCWGG	1 cut(s)	287
BseDI	CCNNGG	2 cut(s)	465, 562
BseGI	GGATG	1 cut(s)	229
BseMII	CTCAG	3 cut(s)	593, 612, 735
BseNI	ACTGG	1 cut(s)	568
BseRI	GAGGAG	2 cut(s)	161, 707
BseXI	GCAGC	5 cut(s)	226, 276, 470, 513, 516
BsgI	GTGCAG	1 cut(s)	719
Bsh1236I	CGCG	4 cut(s)	95, 121, 404, 727
Bsh1285I	CGRYCG	1 cut(s)	456
BshFI	GGCC	6 cut(s)	5, 118, 300, 464, 567, 742
BshNI	GGYRCC	1 cut(s)	188
BsiEI	CGRYCG	1 cut(s)	456
BsiHKAI	GWGCWC	1 cut(s)	431
BsiSI	CCGG	4 cut(s)	456, 626, 648, 713
BsmAI	GTCTC	2 cut(s)	346, 355
BsmBI	CGTCTC	2 cut(s)	346, 355
BsnI	GGCC	6 cut(s)	5, 118, 300, 464, 567, 742
Bsp119I	TTCGAA	1 cut(s)	51
Bsp1286I	GDGCHC	1 cut(s)	431
Bsp143I	GATC	1 cut(s)	551
Bsp1720I	GCTNAGC	1 cut(s)	621
BspANI	GGCC	6 cut(s)	5, 118, 300, 464, 567, 742
BspCNI	CTCAG	3 cut(s)	592, 613, 736
BspFNI	CGCG	4 cut(s)	95, 121, 404, 727
BspLI	GGNNCC	7 cut(s)	63, 190, 280, 299, 419, 553, 741
BspMAI	CTGCAG	1 cut(s)	266
BspOI	GCTAGC	1 cut(s)	312
BspPI	GGATC	2 cut(s)	546, 559
BspT104I	TTCGAA	1 cut(s)	51
BspT107I	GGYRCC	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	568
BssECI	CCNNGG	2 cut(s)	465, 562
BssMI	GATC	1 cut(s)	551
BssNI	GRCGYC	1 cut(s)	327
BssSI	CACGAG	2 cut(s)	180, 422
BssT1I	CCWWGG	1 cut(s)	465
Bst2BI	CACGAG	2 cut(s)	180, 422
Bst2UI	CCWGG	1 cut(s)	287
Bst4CI	ACNGT	4 cut(s)	317, 373, 497, 532
Bst6I	CTCTTC	3 cut(s)	48, 138, 659
BstACI	GRCGYC	1 cut(s)	327
BstBI	TTCGAA	1 cut(s)	51
BstC8I	GCNNGC	6 cut(s)	12, 177, 310, 462, 587, 618
BstDEI	CTNAG	3 cut(s)	579, 621, 744
BstDSI	CCRYGG	1 cut(s)	562
BstF5I	GGATG	1 cut(s)	229
BstFNI	CGCG	4 cut(s)	95, 121, 404, 727
BstH2I	RGCGCY	3 cut(s)	109, 484, 522
BstHHI	GCGC	4 cut(s)	108, 123, 483, 521
BstKTI	GATC	1 cut(s)	554
BstMAI	GTCTC	2 cut(s)	346, 355
BstMBI	GATC	1 cut(s)	551
BstMCI	CGRYCG	1 cut(s)	456
BstNI	CCWGG	1 cut(s)	287
BstSCI	CCNGG	3 cut(s)	285, 455, 647
BstSFI	CTRYAG	1 cut(s)	262
BstUI	CGCG	4 cut(s)	95, 121, 404, 727
BstV1I	GCAGC	5 cut(s)	226, 276, 470, 513, 516
BstV2I	GAAGAC	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	551
BstXI	CCANNNNNNTGG	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	551
BsuRI	GGCC	6 cut(s)	5, 118, 300, 464, 567, 742
BtgI	CCRYGG	1 cut(s)	562
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	575
Cac8I	GCNNGC	6 cut(s)	12, 177, 310, 462, 587, 618
CfoI	GCGC	4 cut(s)	108, 123, 483, 521
Cfr13I	GGNCC	4 cut(s)	298, 417, 645, 740
CseI	GACGC	2 cut(s)	335, 716
Csp6I	GTAC	3 cut(s)	151, 599, 669
CviAII	CATG	2 cut(s)	76, 154
CviQI	GTAC	3 cut(s)	151, 599, 669
DdeI	CTNAG	3 cut(s)	579, 621, 744
DpnI	GATC	1 cut(s)	553
DpnII	GATC	1 cut(s)	551
EaeI	YGGCCR	1 cut(s)	565
Eam1104I	CTCTTC	3 cut(s)	48, 138, 659
EarI	CTCTTC	3 cut(s)	48, 138, 659
EciI	GGCGGA	5 cut(s)	74, 325, 334, 343, 670
Eco130I	CCWWGG	1 cut(s)	465
Eco147I	AGGCCT	1 cut(s)	464
Eco47I	GGWCC	2 cut(s)	417, 645
Eco47III	AGCGCT	2 cut(s)	107, 482
EcoO109I	RGGNCCY	2 cut(s)	417, 740
EcoRII	CCWGG	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	465
ErhI	CCWWGG	1 cut(s)	465
Esp3I	CGTCTC	2 cut(s)	346, 355
FaeI	CATG	2 cut(s)	79, 157
FaiI	YATR	2 cut(s)	77, 155
FatI	CATG	2 cut(s)	75, 153
FauI	CCCGC	1 cut(s)	397
FokI	GGATG	1 cut(s)	216
FspBI	CTAG	1 cut(s)	309
GlaI	GCGC	4 cut(s)	107, 122, 482, 520
GsuI	CTGGAG	1 cut(s)	541
HaeII	RGCGCY	3 cut(s)	109, 484, 522
HaeIII	GGCC	6 cut(s)	5, 118, 300, 464, 567, 742
HapII	CCGG	4 cut(s)	456, 626, 648, 713
HgaI	GACGC	2 cut(s)	335, 716
HhaI	GCGC	4 cut(s)	108, 123, 483, 521
Hin1I	GRCGYC	1 cut(s)	327
Hin1II	CATG	2 cut(s)	79, 157
Hin6I	GCGC	4 cut(s)	106, 121, 481, 519
HinP1I	GCGC	4 cut(s)	106, 121, 481, 519
HinfI	GANTC	3 cut(s)	131, 577, 703
HpaII	CCGG	4 cut(s)	456, 626, 648, 713
HphI	GGTGA	1 cut(s)	388
Hpy166II	GTNNAC	1 cut(s)	645
Hpy188I	TCNGA	6 cut(s)	142, 325, 538, 582, 708, 732
Hpy188III	TCNNGA	3 cut(s)	376, 451, 526
Hpy8I	GTNNAC	1 cut(s)	645
Hpy99I	CGWCG	1 cut(s)	497
HpyAV	CCTTC	1 cut(s)	533
HpyCH4III	ACNGT	4 cut(s)	317, 373, 497, 532
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	3 cut(s)	10, 264, 700
HpyF3I	CTNAG	3 cut(s)	579, 621, 744
HpySE526I	ACGT	1 cut(s)	100
Hsp92I	GRCGYC	1 cut(s)	327
Hsp92II	CATG	2 cut(s)	79, 157
HspAI	GCGC	4 cut(s)	106, 121, 481, 519
Kzo9I	GATC	1 cut(s)	551
LmnI	GCTCC	4 cut(s)	61, 113, 284, 434
Lsp1109I	GCAGC	5 cut(s)	226, 276, 470, 513, 516
LweI	GCATC	2 cut(s)	238, 699
MaeI	CTAG	1 cut(s)	309
MaeII	ACGT	1 cut(s)	100
MaeIII	GTNAC	3 cut(s)	361, 394, 523
MalI	GATC	1 cut(s)	553
MboI	GATC	1 cut(s)	551
MboII	GAAGA	6 cut(s)	65, 155, 158, 673, 676, 730
MflI	RGATCY	1 cut(s)	551
MhlI	GDGCHC	1 cut(s)	431
MlyI	GAGTC	3 cut(s)	125, 571, 712
MspA1I	CMGCKG	1 cut(s)	392
MspI	CCGG	4 cut(s)	456, 626, 648, 713
MspR9I	CCNGG	3 cut(s)	287, 457, 649
MvaI	CCWGG	1 cut(s)	287
MvnI	CGCG	4 cut(s)	95, 121, 404, 727
NciI	CCSGG	2 cut(s)	457, 649
NdeII	GATC	1 cut(s)	551
NheI	GCTAGC	1 cut(s)	308
NlaIII	CATG	2 cut(s)	79, 157
NlaIV	GGNNCC	7 cut(s)	63, 190, 280, 299, 419, 553, 741
NmeAIII	GCCGAG	2 cut(s)	21, 709
NmuCI	GTSAC	2 cut(s)	394, 523
NspV	TTCGAA	1 cut(s)	51
PceI	AGGCCT	1 cut(s)	464
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PleI	GAGTC	3 cut(s)	125, 571, 711
PpsI	GAGTC	3 cut(s)	125, 571, 711
PpuMI	RGGWCCY	1 cut(s)	417
Psp5II	RGGWCCY	1 cut(s)	417
Psp6I	CCWGG	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	285
PspN4I	GGNNCC	7 cut(s)	63, 190, 280, 299, 419, 553, 741
PspPI	GGNCC	4 cut(s)	298, 417, 645, 740
PspPPI	RGGWCCY	1 cut(s)	417
PstI	CTGCAG	1 cut(s)	266
PsuI	RGATCY	1 cut(s)	551
RsaI	GTAC	3 cut(s)	152, 600, 670
RsaNI	GTAC	3 cut(s)	151, 599, 669
Sau3AI	GATC	1 cut(s)	551
Sau96I	GGNCC	4 cut(s)	298, 417, 645, 740
ScaI	AGTACT	1 cut(s)	670
SchI	GAGTC	3 cut(s)	125, 571, 712
ScrFI	CCNGG	3 cut(s)	287, 457, 649
SduI	GDGCHC	1 cut(s)	431
SetI	ASST	6 cut(s)	90, 103, 254, 335, 609, 699
SfaNI	GCATC	2 cut(s)	238, 699
SfcI	CTRYAG	1 cut(s)	262
SfuI	TTCGAA	1 cut(s)	51
SinI	GGWCC	2 cut(s)	417, 645
SmlI	CTYRAG	1 cut(s)	672
SmoI	CTYRAG	1 cut(s)	672
SseBI	AGGCCT	1 cut(s)	464
SspMI	CTAG	1 cut(s)	309
StuI	AGGCCT	1 cut(s)	464
StyD4I	CCNGG	3 cut(s)	285, 455, 647
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	4 cut(s)	317, 373, 497, 532
TaiI	ACGT	1 cut(s)	103
TaqI	TCGA	4 cut(s)	51, 126, 603, 654
TatI	WGTACW	2 cut(s)	150, 668
TscAI	CASTG	1 cut(s)	575
TseFI	GTSAC	2 cut(s)	394, 523
TseI	GCWGC	5 cut(s)	239, 264, 483, 501, 504
Tsp45I	GTSAC	2 cut(s)	394, 523
TspDTI	ATGAA	1 cut(s)	92
TspRI	CASTG	1 cut(s)	575
VpaK11BI	GGWCC	2 cut(s)	417, 645
XcmI	CCANNNNNNNNNTGG	1 cut(s)	494
XspI	CTAG	1 cut(s)	309
ZrmI	AGTACT	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.