Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0017236

Physical Location & Seq

Genomic Coordinates Reverse (-)

12876524 .. 12877264

Gene Structure 741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g09620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCCTTAGAGGCTTTGAAATCCGCGAGTACCATCACTAATACTTCTCCACCCTTCTCATCGTTTGAAGAGGCGGAGGATCGTCGTCAAGCCAATCACCAAATCCACTCCAAAGAGCCATGGGCAAAGAGGAAGCGCTCTAAGCGGCCTCGCAGCGAAGACCCACCAACCGAAGAGGAGTACCTCGCTCTCTGCCTCATCATGCTCGCCCGCGGCACCACTGCCGCCGCCACCACTAGCAGCTCTGAATCGCCTGCGCAGCCGCCGTCCCGGGAACTTTCTTACAAGTGCTCTGTTTGTAACAAGGGGTTCTCCTCTTACCAAGCTCTTGGCGGACACAAGGCCAGCCACCGGAAATCCGACTCTTCCGCCGCCGCCGCTGCCACGGTGGATCATCCAATTGCCGCTGCTTCCGCCGGGCCAACAACAAGCGCTAGGACCCACGAGTGCTCTATCTGCCACAAGACCTTCCCCACCGGCCAGGCCTTGGGTGGACACAAGCGCTGCCACTACGACGGCGGTATCGCTGTCACTACTTCCGAAGGCGGCGGTGCTGGGGCCTCGAGCCACAGTCAGAGTCAGAGTCATCAGAGTCAACGCGGCTTTGACCTGAACCTGCCAGCGTTGCCGGAGTTCTGGCCTGGGTTCGGCGCTGACAAGAAGAGTCAACTCTCCGGCGAGCAGGAGGTGCAGAGCCCGATGGTAGCCAAGAAGCCGCGGTGGTTGTTGGGTCGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010117 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015979 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0035264 GO:0040007 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048589 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

247

Amino Acids

26.26

Weight (kDa)

8.89

Isoelectric Point (pI)

76.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	95 - 120	2.7e-13	C2H2-type zinc finger
zf-C2H2_6	PF13912	148 - 172	3.9e-12	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04120
malus_domestica	MD05G1098300.v1.1 MD10G1104100.v1.1
prunus_persica	Prupe.8G142400_v2.0.a1
pyrus_communis	pycom05g09620 pycom10g08950
rosa_chinensis	RchiOBHm_Chr6g0253491
rosa_laevigata	RLG00000015015
rosa_multiflora	Rmu_ssc0000079.1_g000007
rosa_rugosa	Rorug05G0544700
rosa_samantha	Rh6AG059700 Rh6BG053700 Rh6CG050800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	258
Acc36I	ACCTGC	1 cut(s)	624
AccB1I	GGYRCC	1 cut(s)	215
AccB7I	CCANNNNNTGG	1 cut(s)	487
AccII	CGCG	4 cut(s)	26, 213, 600, 718
AclWI	GGATC	2 cut(s)	87, 399
AcoI	YGGCCR	1 cut(s)	478
AfaI	GTAC	2 cut(s)	31, 182
AfeI	AGCGCT	3 cut(s)	137, 433, 503
AfiI	CCNNNNNNNGG	3 cut(s)	351, 487, 647
AgsI	TTSAA	2 cut(s)	19, 68
AjnI	CCWGG	2 cut(s)	480, 640
AluBI	AGCT	2 cut(s)	243, 326
AluI	AGCT	2 cut(s)	243, 326
Alw21I	GWGCWC	2 cut(s)	293, 452
AlwI	GGATC	2 cut(s)	87, 399
Ama87I	CYCGRG	2 cut(s)	270, 562
Aor51HI	AGCGCT	3 cut(s)	137, 433, 503
AoxI	GGCC	8 cut(s)	3, 146, 342, 419, 478, 483, 558, 638
ApeKI	GCWGC	6 cut(s)	153, 240, 259, 380, 407, 504
AspLEI	GCGC	5 cut(s)	138, 259, 434, 504, 653
AspS9I	GGNCC	3 cut(s)	419, 438, 558
AsuC2I	CCSGG	3 cut(s)	271, 272, 418
AsuHPI	GGTGA	1 cut(s)	89
AvaI	CYCGRG	2 cut(s)	270, 562
AvaII	GGWCC	1 cut(s)	438
BaeI	ACNNNNGTAYC	2 cut(s)	505, 538
BanI	GGYRCC	1 cut(s)	215
BanII	GRGCYC	1 cut(s)	698
BauI	CACGAG	1 cut(s)	443
BbsI	GAAGAC	1 cut(s)	165
Bbv12I	GWGCWC	2 cut(s)	293, 452
BbvI	GCAGC	6 cut(s)	165, 252, 271, 367, 394, 491
BccI	CCATC	2 cut(s)	41, 694
BceAI	ACGGC	2 cut(s)	250, 532
BciT130I	CCWGG	2 cut(s)	482, 642
BcnI	CCSGG	3 cut(s)	271, 272, 418
BfaI	CTAG	2 cut(s)	237, 435
BfoI	RGCGCY	4 cut(s)	139, 435, 505, 654
BfuAI	ACCTGC	1 cut(s)	624
BglI	GCCNNNNNGGC	1 cut(s)	11
Bme1390I	CCNGG	5 cut(s)	271, 272, 418, 482, 642
Bme18I	GGWCC	1 cut(s)	438
BmeT110I	CYCGRG	2 cut(s)	270, 562
BmgT120I	GGNCC	3 cut(s)	419, 438, 558
BmiI	GGNNCC	3 cut(s)	217, 440, 559
BmrFI	CCNGG	5 cut(s)	271, 272, 418, 482, 642
BpiI	GAAGAC	1 cut(s)	165
BpuMI	CCSGG	3 cut(s)	271, 272, 418
BsaJI	CCNNGG	7 cut(s)	119, 211, 270, 384, 486, 641, 716
BsaWI	WCCGGW	1 cut(s)	351
Bsc4I	CCNNNNNNNGG	3 cut(s)	351, 487, 647
Bse118I	RCCGGY	1 cut(s)	476
BseBI	CCWGG	2 cut(s)	482, 642
BseDI	CCNNGG	7 cut(s)	119, 211, 270, 384, 486, 641, 716
BseGI	GGATG	1 cut(s)	394
BseLI	CCNNNNNNNGG	3 cut(s)	351, 487, 647
BseRI	GAGGAG	2 cut(s)	191, 304
BseXI	GCAGC	6 cut(s)	165, 252, 271, 367, 394, 491
BseYI	CCCAGC	1 cut(s)	554
BsgI	GTGCAG	1 cut(s)	710
Bsh1236I	CGCG	4 cut(s)	26, 213, 600, 718
BshFI	GGCC	8 cut(s)	5, 148, 344, 421, 480, 485, 560, 640
BshNI	GGYRCC	1 cut(s)	215
BsiHKAI	GWGCWC	2 cut(s)	293, 452
BsiHKCI	CYCGRG	2 cut(s)	270, 562
BsiSI	CCGG	6 cut(s)	271, 352, 417, 477, 629, 675
BslFI	GGGAC	1 cut(s)	253
BslI	CCNNNNNNNGG	3 cut(s)	351, 487, 647
BsmFI	GGGAC	1 cut(s)	253
BsnI	GGCC	8 cut(s)	5, 148, 344, 421, 480, 485, 560, 640
BsoBI	CYCGRG	2 cut(s)	270, 562
Bsp1286I	GDGCHC	3 cut(s)	293, 452, 698
Bsp143I	GATC	2 cut(s)	79, 391
Bsp19I	CCATGG	1 cut(s)	119
BspANI	GGCC	8 cut(s)	5, 148, 344, 421, 480, 485, 560, 640
BspFNI	CGCG	4 cut(s)	26, 213, 600, 718
BspLI	GGNNCC	3 cut(s)	217, 440, 559
BspMI	ACCTGC	1 cut(s)	624
BspPI	GGATC	2 cut(s)	87, 399
BspT107I	GGYRCC	1 cut(s)	215
BsrFI	RCCGGY	1 cut(s)	476
BssAI	RCCGGY	1 cut(s)	476
BssECI	CCNNGG	7 cut(s)	119, 211, 270, 384, 486, 641, 716
BssMI	GATC	2 cut(s)	79, 391
BssSI	CACGAG	1 cut(s)	443
BssT1I	CCWWGG	2 cut(s)	119, 486
Bst2BI	CACGAG	1 cut(s)	443
Bst2UI	CCWGG	2 cut(s)	482, 642
Bst4CI	ACNGT	2 cut(s)	388, 572
Bst6I	CTCTTC	4 cut(s)	63, 168, 370, 656
BstAPI	GCANNNNNTGC	1 cut(s)	688
BstC8I	GCNNGC	6 cut(s)	207, 211, 255, 346, 621, 680
BstDEI	CTNAG	2 cut(s)	7, 141
BstDSI	CCRYGG	4 cut(s)	119, 211, 384, 716
BstF5I	GGATG	1 cut(s)	394
BstFNI	CGCG	4 cut(s)	26, 213, 600, 718
BstH2I	RGCGCY	4 cut(s)	139, 435, 505, 654
BstHHI	GCGC	5 cut(s)	138, 259, 434, 504, 653
BstKTI	GATC	2 cut(s)	82, 394
BstMBI	GATC	2 cut(s)	79, 391
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 142, 259, 377, 380, 413, 456, 625, 688
BstNI	CCWGG	2 cut(s)	482, 642
BstSCI	CCNGG	5 cut(s)	269, 270, 416, 480, 640
BstUI	CGCG	4 cut(s)	26, 213, 600, 718
BstV1I	GCAGC	6 cut(s)	165, 252, 271, 367, 394, 491
BstV2I	GAAGAC	1 cut(s)	165
BstXI	CCANNNNNNTGG	1 cut(s)	329
BsuRI	GGCC	8 cut(s)	5, 148, 344, 421, 480, 485, 560, 640
BtgI	CCRYGG	4 cut(s)	119, 211, 384, 716
BtsCI	GGATG	1 cut(s)	394
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	219
BveI	ACCTGC	1 cut(s)	624
Cac8I	GCNNGC	6 cut(s)	207, 211, 255, 346, 621, 680
CfoI	GCGC	5 cut(s)	138, 259, 434, 504, 653
Cfr10I	RCCGGY	1 cut(s)	476
Cfr13I	GGNCC	3 cut(s)	419, 438, 558
Cfr42I	CCGCGG	2 cut(s)	214, 719
Cfr9I	CCCGGG	1 cut(s)	270
Csp6I	GTAC	2 cut(s)	30, 181
CviAII	CATG	2 cut(s)	120, 202
CviQI	GTAC	2 cut(s)	30, 181
DdeI	CTNAG	2 cut(s)	7, 141
DpnI	GATC	2 cut(s)	81, 393
DpnII	GATC	2 cut(s)	79, 391
EaeI	YGGCCR	1 cut(s)	478
Eam1104I	CTCTTC	4 cut(s)	63, 168, 370, 656
EarI	CTCTTC	4 cut(s)	63, 168, 370, 656
EciI	GGCGGA	4 cut(s)	89, 348, 358, 403
Eco130I	CCWWGG	2 cut(s)	119, 486
Eco147I	AGGCCT	1 cut(s)	485
Eco24I	GRGCYC	1 cut(s)	698
Eco47I	GGWCC	1 cut(s)	438
Eco47III	AGCGCT	3 cut(s)	137, 433, 503
Eco88I	CYCGRG	2 cut(s)	270, 562
EcoO109I	RGGNCCY	2 cut(s)	438, 558
EcoRII	CCWGG	2 cut(s)	480, 640
EcoT14I	CCWWGG	2 cut(s)	119, 486
EcoT38I	GRGCYC	1 cut(s)	698
ErhI	CCWWGG	2 cut(s)	119, 486
FaeI	CATG	2 cut(s)	123, 205
FaiI	YATR	2 cut(s)	121, 203
FaqI	GGGAC	1 cut(s)	253
FatI	CATG	2 cut(s)	119, 201
FauI	CCCGC	1 cut(s)	218
FokI	GGATG	1 cut(s)	381
FriOI	GRGCYC	1 cut(s)	698
FspBI	CTAG	2 cut(s)	237, 435
FspI	TGCGCA	1 cut(s)	258
GlaI	GCGC	5 cut(s)	137, 258, 433, 503, 652
GsaI	CCCAGC	1 cut(s)	558
HaeII	RGCGCY	4 cut(s)	139, 435, 505, 654
HaeIII	GGCC	8 cut(s)	5, 148, 344, 421, 480, 485, 560, 640
HapII	CCGG	6 cut(s)	271, 352, 417, 477, 629, 675
HhaI	GCGC	5 cut(s)	138, 259, 434, 504, 653
Hin1II	CATG	2 cut(s)	123, 205
Hin6I	GCGC	5 cut(s)	136, 257, 432, 502, 651
HinP1I	GCGC	5 cut(s)	136, 257, 432, 502, 651
HincII	GTYRAC	2 cut(s)	596, 668
HindII	GTYRAC	2 cut(s)	596, 668
HinfI	GANTC	6 cut(s)	248, 362, 577, 583, 592, 664
HpaII	CCGG	6 cut(s)	271, 352, 417, 477, 629, 675
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	3 cut(s)	494, 596, 668
Hpy188I	TCNGA	6 cut(s)	247, 361, 541, 576, 582, 591
Hpy188III	TCNNGA	1 cut(s)	734
Hpy8I	GTNNAC	3 cut(s)	494, 596, 668
Hpy99I	CGWCG	2 cut(s)	87, 518
HpyAV	CCTTC	3 cut(s)	64, 478, 536
HpyCH4III	ACNGT	2 cut(s)	388, 572
HpyCH4V	TGCA	1 cut(s)	691
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 142, 259, 377, 380, 413, 456, 625, 688
HpyF3I	CTNAG	2 cut(s)	7, 141
Hsp92II	CATG	2 cut(s)	123, 205
HspAI	GCGC	5 cut(s)	136, 257, 432, 502, 651
KspI	CCGCGG	2 cut(s)	214, 719
Kzo9I	GATC	2 cut(s)	79, 391
Lsp1109I	GCAGC	6 cut(s)	165, 252, 271, 367, 394, 491
MaeI	CTAG	2 cut(s)	237, 435
MaeIII	GTNAC	2 cut(s)	299, 529
MalI	GATC	2 cut(s)	81, 393
MboI	GATC	2 cut(s)	79, 391
MboII	GAAGA	5 cut(s)	80, 170, 185, 357, 673
MfeI	CAATTG	1 cut(s)	399
MhlI	GDGCHC	3 cut(s)	293, 452, 698
MluCI	AATT	1 cut(s)	399
MlyI	GAGTC	5 cut(s)	356, 586, 592, 601, 673
MmeI	TCCRAC	1 cut(s)	384
MspA1I	CMGCKG	4 cut(s)	213, 380, 407, 718
MspI	CCGG	6 cut(s)	271, 352, 417, 477, 629, 675
MspR9I	CCNGG	5 cut(s)	271, 272, 418, 482, 642
MunI	CAATTG	1 cut(s)	399
MvaI	CCWGG	2 cut(s)	482, 642
MvnI	CGCG	4 cut(s)	26, 213, 600, 718
MwoI	GCNNNNNNNGC	9 cut(s)	11, 142, 259, 377, 380, 413, 456, 625, 688
NciI	CCSGG	3 cut(s)	271, 272, 418
NcoI	CCATGG	1 cut(s)	119
NdeII	GATC	2 cut(s)	79, 391
NlaIII	CATG	2 cut(s)	123, 205
NlaIV	GGNNCC	3 cut(s)	217, 440, 559
NmuCI	GTSAC	1 cut(s)	529
NsbI	TGCGCA	1 cut(s)	258
PaeR7I	CTCGAG	1 cut(s)	562
PceI	AGGCCT	1 cut(s)	485
PfeI	GAWTC	1 cut(s)	248
PflMI	CCANNNNNTGG	1 cut(s)	487
PleI	GAGTC	5 cut(s)	356, 585, 591, 600, 672
PpsI	GAGTC	5 cut(s)	356, 585, 591, 600, 672
PpuMI	RGGWCCY	1 cut(s)	438
Psp5II	RGGWCCY	1 cut(s)	438
Psp6I	CCWGG	2 cut(s)	480, 640
PspFI	CCCAGC	1 cut(s)	554
PspGI	CCWGG	2 cut(s)	480, 640
PspN4I	GGNNCC	3 cut(s)	217, 440, 559
PspPI	GGNCC	3 cut(s)	419, 438, 558
PspPPI	RGGWCCY	1 cut(s)	438
PspXI	VCTCGAGB	1 cut(s)	562
RsaI	GTAC	2 cut(s)	31, 182
RsaNI	GTAC	2 cut(s)	30, 181
SacII	CCGCGG	2 cut(s)	214, 719
Sau3AI	GATC	2 cut(s)	79, 391
Sau96I	GGNCC	3 cut(s)	419, 438, 558
SchI	GAGTC	5 cut(s)	356, 586, 592, 601, 673
ScrFI	CCNGG	5 cut(s)	271, 272, 418, 482, 642
SduI	GDGCHC	3 cut(s)	293, 452, 698
SetI	ASST	7 cut(s)	186, 245, 328, 470, 612, 618, 690
Sfr274I	CTCGAG	1 cut(s)	562
Sfr303I	CCGCGG	2 cut(s)	214, 719
SgrBI	CCGCGG	2 cut(s)	214, 719
SinI	GGWCC	1 cut(s)	438
SlaI	CTCGAG	1 cut(s)	562
SmaI	CCCGGG	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	562
SmoI	CTYRAG	1 cut(s)	562
Sse9I	AATT	1 cut(s)	399
SseBI	AGGCCT	1 cut(s)	485
SspMI	CTAG	2 cut(s)	237, 435
StuI	AGGCCT	1 cut(s)	485
StyD4I	CCNGG	5 cut(s)	269, 270, 416, 480, 640
StyI	CCWWGG	2 cut(s)	119, 486
TaaI	ACNGT	2 cut(s)	388, 572
TaqI	TCGA	2 cut(s)	563, 733
TasI	AATT	1 cut(s)	399
TfiI	GAWTC	1 cut(s)	248
TscAI	CASTG	1 cut(s)	226
TseFI	GTSAC	1 cut(s)	529
TseI	GCWGC	6 cut(s)	153, 240, 259, 380, 407, 504
Tsp45I	GTSAC	1 cut(s)	529
TspMI	CCCGGG	1 cut(s)	270
TspRI	CASTG	1 cut(s)	226
Van91I	CCANNNNNTGG	1 cut(s)	487
VpaK11BI	GGWCC	1 cut(s)	438
XcmI	CCANNNNNNNNNTGG	1 cut(s)	488
XhoI	CTCGAG	1 cut(s)	562
XmaI	CCCGGG	1 cut(s)	270
XspI	CTAG	2 cut(s)	237, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.