Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0017236

Physical Location & Seq

Genomic Coordinates Reverse (-)

5115686 .. 5117325

Gene Structure 1640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG050800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCCTTGCAGGCTCTCAACTCCCCAAACACCGCCGCTCTCGGTGGCTTCGAAGACGAGCCTAACCGCAACATGAACCACCACCTCGCCTCGAAGAGGAAGCGCTCCAAGAGGCCGCGTTTCGAGGACTCGCTTTCCGAAGAGGAGTACATGGCTTTCTGTCTTCTCTTGCTAGCTCGTGGCGGCACCACCAACGCCACCGACACCACCGCTACCGCTACCGCTCCGCTTCCACCGCATCCGCCTGCTTCTTACAGGTGTGTTGTCTGCAGCAAGGCTTTCGGCTCCTACCAGGCTCTTGGGGGCCACAAGGCTAGCCACCGCAAGTCCGACGCCACCTCCGCCGTCTCCGCCGCCGTAACCGCCACCGTCAAGACTGAAATCCCGGCTGTCACCGCCGCGAGTGGTGGGAGGACCCACGAGTGCACCATCTGCCACAAGTGCTTCCCGACCGGGCAGGCCTTGGGAGGACACAAGCGCTGCCACTACGACGGCGGCAGCAGCACCGCCAACAGCGCCGTCACGACGGTTTCCGAAGGCGGCGGCGGATCCTCCAGCCACGGCCAGAGCCAGAGCCAGCGTGGGTTCGTACTCGACTTGAACTTGCCTGCTGAGCCGGAAGTGCTACAAGTGTGGACCGGGTTCGACAAGAAGAAGAGTACTCAAGTCTCCGCCGAGCAGGAGGAGGTGCAGAGTCCGATGCCGGAGAAGAAGCCGCGTCTGACATTGGGGCGTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010117 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015979 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0035264 GO:0040007 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048589 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

246

Amino Acids

26.05

Weight (kDa)

8.67

Isoelectric Point (pI)

67.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	85 - 110	5.3e-12	C2H2-type zinc finger
zf-C2H2_6	PF13912	140 - 164	4.7e-10	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04120
malus_domestica	MD05G1098300.v1.1 MD10G1104100.v1.1
prunus_persica	Prupe.8G142400_v2.0.a1
pyrus_communis	pycom05g09620 pycom10g08950
rosa_chinensis	RchiOBHm_Chr6g0253491
rosa_laevigata	RLG00000015015
rosa_multiflora	Rmu_ssc0000079.1_g000007
rosa_rugosa	Rorug05G0544700
rosa_samantha	Rh6AG059700 Rh6BG053700 Rh6CG050800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	185
AccBSI	CCGCTC	2 cut(s)	38, 224
AccII	CGCG	3 cut(s)	118, 401, 718
AclWI	GGATC	2 cut(s)	543, 556
AcoI	YGGCCR	1 cut(s)	562
AcyI	GRCGYC	1 cut(s)	333
AfaI	GTAC	3 cut(s)	149, 591, 661
AfeI	AGCGCT	2 cut(s)	104, 479
AfiI	CCNNNNNNNGG	1 cut(s)	96
AgsI	TTSAA	1 cut(s)	601
AjnI	CCWGG	1 cut(s)	291
AluBI	AGCT	1 cut(s)	176
AluI	AGCT	1 cut(s)	176
Alw21I	GWGCWC	1 cut(s)	428
Alw26I	GTCTC	2 cut(s)	352, 673
Alw44I	GTGCAC	1 cut(s)	424
AlwI	GGATC	2 cut(s)	543, 556
Aor51HI	AGCGCT	2 cut(s)	104, 479
AoxI	GGCC	5 cut(s)	3, 113, 304, 459, 562
ApaLI	GTGCAC	1 cut(s)	424
ApeKI	GCWGC	4 cut(s)	270, 480, 498, 501
AspLEI	GCGC	3 cut(s)	105, 480, 518
AspS9I	GGNCC	3 cut(s)	304, 414, 636
AsuC2I	CCSGG	3 cut(s)	386, 454, 640
AsuHPI	GGTGA	1 cut(s)	385
AsuII	TTCGAA	1 cut(s)	51
AsuNHI	GCTAGC	2 cut(s)	172, 314
AvaII	GGWCC	2 cut(s)	414, 636
BaeGI	GKGCMC	1 cut(s)	428
BamHI	GGATCC	1 cut(s)	548
BanI	GGYRCC	1 cut(s)	185
BauI	CACGAG	2 cut(s)	177, 419
BbsI	GAAGAC	2 cut(s)	60, 155
Bbv12I	GWGCWC	1 cut(s)	428
BbvI	GCAGC	4 cut(s)	282, 467, 510, 513
BccI	CCATC	1 cut(s)	437
BceAI	ACGGC	5 cut(s)	329, 341, 503, 508, 577
BcgI	CGANNNNNNTGC	2 cut(s)	262, 296
BciT130I	CCWGG	1 cut(s)	293
BcnI	CCSGG	3 cut(s)	386, 454, 640
BcoDI	GTCTC	2 cut(s)	352, 673
BfaI	CTAG	2 cut(s)	173, 315
BfmI	CTRYAG	1 cut(s)	268
BfoI	RGCGCY	3 cut(s)	106, 481, 519
BglI	GCCNNNNNGGC	1 cut(s)	11
BlpI	GCTNAGC	1 cut(s)	612
BmcAI	AGTACT	1 cut(s)	661
Bme1390I	CCNGG	4 cut(s)	293, 386, 454, 640
Bme18I	GGWCC	2 cut(s)	414, 636
BmgT120I	GGNCC	3 cut(s)	304, 414, 636
BmiI	GGNNCC	5 cut(s)	187, 286, 305, 416, 550
BmrFI	CCNGG	4 cut(s)	293, 386, 454, 640
BmsI	GCATC	2 cut(s)	247, 690
BmtI	GCTAGC	2 cut(s)	176, 318
BpiI	GAAGAC	2 cut(s)	60, 155
BpmI	CTGGAG	1 cut(s)	538
Bpu1102I	GCTNAGC	1 cut(s)	612
Bpu14I	TTCGAA	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	648
BpuMI	CCSGG	3 cut(s)	386, 454, 640
BsaHI	GRCGYC	1 cut(s)	333
BsaJI	CCNNGG	2 cut(s)	462, 559
BsaXI	ACNNNNNCTCC	2 cut(s)	323, 353
Bsc4I	CCNNNNNNNGG	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	293
BseDI	CCNNGG	2 cut(s)	462, 559
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	1 cut(s)	96
BseMII	CTCAG	1 cut(s)	603
BseRI	GAGGAG	2 cut(s)	158, 698
BseSI	GKGCMC	1 cut(s)	428
BseXI	GCAGC	4 cut(s)	282, 467, 510, 513
BsgI	GTGCAG	1 cut(s)	710
Bsh1236I	CGCG	3 cut(s)	118, 401, 718
Bsh1285I	CGRYCG	1 cut(s)	453
BshFI	GGCC	5 cut(s)	5, 115, 306, 461, 564
BshNI	GGYRCC	1 cut(s)	185
BsiEI	CGRYCG	1 cut(s)	453
BsiHKAI	GWGCWC	1 cut(s)	428
BsiSI	CCGG	5 cut(s)	386, 453, 617, 639, 704
BslI	CCNNNNNNNGG	1 cut(s)	96
BsmAI	GTCTC	2 cut(s)	352, 673
BsmBI	CGTCTC	1 cut(s)	352
BsnI	GGCC	5 cut(s)	5, 115, 306, 461, 564
Bsp119I	TTCGAA	1 cut(s)	51
Bsp1286I	GDGCHC	1 cut(s)	428
Bsp143I	GATC	1 cut(s)	548
Bsp1720I	GCTNAGC	1 cut(s)	612
BspANI	GGCC	5 cut(s)	5, 115, 306, 461, 564
BspCNI	CTCAG	1 cut(s)	604
BspFNI	CGCG	3 cut(s)	118, 401, 718
BspLI	GGNNCC	5 cut(s)	187, 286, 305, 416, 550
BspMAI	CTGCAG	1 cut(s)	272
BspOI	GCTAGC	2 cut(s)	176, 318
BspPI	GGATC	2 cut(s)	543, 556
BspT104I	TTCGAA	1 cut(s)	51
BspT107I	GGYRCC	1 cut(s)	185
BsrBI	CCGCTC	2 cut(s)	38, 224
BssECI	CCNNGG	2 cut(s)	462, 559
BssMI	GATC	1 cut(s)	548
BssNI	GRCGYC	1 cut(s)	333
BssSI	CACGAG	2 cut(s)	177, 419
BssT1I	CCWWGG	1 cut(s)	462
Bst2BI	CACGAG	2 cut(s)	177, 419
Bst2UI	CCWGG	1 cut(s)	293
Bst4CI	ACNGT	2 cut(s)	370, 529
Bst6I	CTCTTC	3 cut(s)	89, 135, 650
BstACI	GRCGYC	1 cut(s)	333
BstAPI	GCANNNNNTGC	1 cut(s)	432
BstBI	TTCGAA	1 cut(s)	51
BstC8I	GCNNGC	7 cut(s)	12, 174, 246, 316, 459, 578, 609
BstDEI	CTNAG	1 cut(s)	612
BstDSI	CCRYGG	1 cut(s)	559
BstENI	CCTNNNNNAGG	1 cut(s)	94
BstF5I	GGATG	1 cut(s)	238
BstFNI	CGCG	3 cut(s)	118, 401, 718
BstH2I	RGCGCY	3 cut(s)	106, 481, 519
BstHHI	GCGC	3 cut(s)	105, 480, 518
BstKTI	GATC	1 cut(s)	551
BstMAI	GTCTC	2 cut(s)	352, 673
BstMBI	GATC	1 cut(s)	548
BstMCI	CGRYCG	1 cut(s)	453
BstNI	CCWGG	1 cut(s)	293
BstSCI	CCNGG	4 cut(s)	291, 384, 452, 638
BstSFI	CTRYAG	1 cut(s)	268
BstSLI	GKGCMC	1 cut(s)	428
BstUI	CGCG	3 cut(s)	118, 401, 718
BstV1I	GCAGC	4 cut(s)	282, 467, 510, 513
BstV2I	GAAGAC	2 cut(s)	60, 155
BstX2I	RGATCY	1 cut(s)	548
BstXI	CCANNNNNNTGG	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	548
BsuRI	GGCC	5 cut(s)	5, 115, 306, 461, 564
BtgI	CCRYGG	1 cut(s)	559
BtsCI	GGATG	1 cut(s)	238
Cac8I	GCNNGC	7 cut(s)	12, 174, 246, 316, 459, 578, 609
CfoI	GCGC	3 cut(s)	105, 480, 518
Cfr13I	GGNCC	3 cut(s)	304, 414, 636
CseI	GACGC	2 cut(s)	341, 707
Csp6I	GTAC	3 cut(s)	148, 590, 660
CviAII	CATG	2 cut(s)	73, 151
CviQI	GTAC	3 cut(s)	148, 590, 660
DdeI	CTNAG	1 cut(s)	612
DpnI	GATC	1 cut(s)	550
DpnII	GATC	1 cut(s)	548
EaeI	YGGCCR	1 cut(s)	562
Eam1104I	CTCTTC	3 cut(s)	89, 135, 650
EarI	CTCTTC	3 cut(s)	89, 135, 650
EciI	GGCGGA	5 cut(s)	231, 331, 340, 561, 661
Eco130I	CCWWGG	1 cut(s)	462
Eco147I	AGGCCT	1 cut(s)	461
Eco47I	GGWCC	2 cut(s)	414, 636
Eco47III	AGCGCT	2 cut(s)	104, 479
EcoNI	CCTNNNNNAGG	1 cut(s)	94
EcoO109I	RGGNCCY	1 cut(s)	414
EcoRII	CCWGG	1 cut(s)	291
EcoT14I	CCWWGG	1 cut(s)	462
ErhI	CCWWGG	1 cut(s)	462
Esp3I	CGTCTC	1 cut(s)	352
FaeI	CATG	2 cut(s)	76, 154
FaiI	YATR	2 cut(s)	74, 152
FatI	CATG	2 cut(s)	72, 150
FokI	GGATG	1 cut(s)	225
FspBI	CTAG	2 cut(s)	173, 315
GlaI	GCGC	3 cut(s)	104, 479, 517
GsuI	CTGGAG	1 cut(s)	538
HaeII	RGCGCY	3 cut(s)	106, 481, 519
HaeIII	GGCC	5 cut(s)	5, 115, 306, 461, 564
HapII	CCGG	5 cut(s)	386, 453, 617, 639, 704
HgaI	GACGC	2 cut(s)	341, 707
HhaI	GCGC	3 cut(s)	105, 480, 518
Hin1I	GRCGYC	1 cut(s)	333
Hin1II	CATG	2 cut(s)	76, 154
Hin6I	GCGC	3 cut(s)	103, 478, 516
HinP1I	GCGC	3 cut(s)	103, 478, 516
HinfI	GANTC	2 cut(s)	128, 694
HpaII	CCGG	5 cut(s)	386, 453, 617, 639, 704
HphI	GGTGA	1 cut(s)	385
Hpy166II	GTNNAC	2 cut(s)	426, 636
Hpy188I	TCNGA	5 cut(s)	139, 331, 535, 699, 723
Hpy188III	TCNNGA	3 cut(s)	373, 448, 523
Hpy8I	GTNNAC	2 cut(s)	426, 636
Hpy99I	CGWCG	3 cut(s)	335, 494, 529
HpyAV	CCTTC	1 cut(s)	530
HpyCH4III	ACNGT	2 cut(s)	370, 529
HpyCH4V	TGCA	4 cut(s)	10, 270, 426, 691
HpyF3I	CTNAG	1 cut(s)	612
Hsp92I	GRCGYC	1 cut(s)	333
Hsp92II	CATG	2 cut(s)	76, 154
HspAI	GCGC	3 cut(s)	103, 478, 516
Kzo9I	GATC	1 cut(s)	548
LmnI	GCTCC	3 cut(s)	110, 229, 290
Lsp1109I	GCAGC	4 cut(s)	282, 467, 510, 513
LweI	GCATC	2 cut(s)	247, 690
MaeI	CTAG	2 cut(s)	173, 315
MaeIII	GTNAC	3 cut(s)	358, 391, 520
MalI	GATC	1 cut(s)	550
MbiI	CCGCTC	2 cut(s)	38, 224
MboI	GATC	1 cut(s)	548
MboII	GAAGA	7 cut(s)	65, 106, 152, 155, 664, 667, 721
MflI	RGATCY	1 cut(s)	548
MhlI	GDGCHC	1 cut(s)	428
MlyI	GAGTC	2 cut(s)	122, 703
MmeI	TCCRAC	1 cut(s)	354
MspI	CCGG	5 cut(s)	386, 453, 617, 639, 704
MspR9I	CCNGG	4 cut(s)	293, 386, 454, 640
MvaI	CCWGG	1 cut(s)	293
MvnI	CGCG	3 cut(s)	118, 401, 718
NciI	CCSGG	3 cut(s)	386, 454, 640
NdeII	GATC	1 cut(s)	548
NheI	GCTAGC	2 cut(s)	172, 314
NlaIII	CATG	2 cut(s)	76, 154
NlaIV	GGNNCC	5 cut(s)	187, 286, 305, 416, 550
NmeAIII	GCCGAG	1 cut(s)	700
NmuCI	GTSAC	2 cut(s)	391, 520
NspV	TTCGAA	1 cut(s)	51
PceI	AGGCCT	1 cut(s)	461
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PleI	GAGTC	2 cut(s)	122, 702
PpsI	GAGTC	2 cut(s)	122, 702
PpuMI	RGGWCCY	1 cut(s)	414
Psp5II	RGGWCCY	1 cut(s)	414
Psp6I	CCWGG	1 cut(s)	291
PspGI	CCWGG	1 cut(s)	291
PspN4I	GGNNCC	5 cut(s)	187, 286, 305, 416, 550
PspPI	GGNCC	3 cut(s)	304, 414, 636
PspPPI	RGGWCCY	1 cut(s)	414
PstI	CTGCAG	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	548
RsaI	GTAC	3 cut(s)	149, 591, 661
RsaNI	GTAC	3 cut(s)	148, 590, 660
Sau3AI	GATC	1 cut(s)	548
Sau96I	GGNCC	3 cut(s)	304, 414, 636
ScaI	AGTACT	1 cut(s)	661
SchI	GAGTC	2 cut(s)	122, 703
ScrFI	CCNGG	4 cut(s)	293, 386, 454, 640
SduI	GDGCHC	1 cut(s)	428
SetI	ASST	5 cut(s)	87, 178, 260, 341, 690
SfaNI	GCATC	2 cut(s)	247, 690
SfcI	CTRYAG	1 cut(s)	268
SfuI	TTCGAA	1 cut(s)	51
SinI	GGWCC	2 cut(s)	414, 636
SmlI	CTYRAG	1 cut(s)	663
SmoI	CTYRAG	1 cut(s)	663
SseBI	AGGCCT	1 cut(s)	461
SspMI	CTAG	2 cut(s)	173, 315
StuI	AGGCCT	1 cut(s)	461
StyD4I	CCNGG	4 cut(s)	291, 384, 452, 638
StyI	CCWWGG	1 cut(s)	462
TaaI	ACNGT	2 cut(s)	370, 529
TaqI	TCGA	5 cut(s)	51, 92, 123, 594, 645
TatI	WGTACW	2 cut(s)	147, 659
TauI	GCSGC	9 cut(s)	38, 118, 186, 356, 401, 498, 543, 546, 718
TseFI	GTSAC	2 cut(s)	391, 520
TseI	GCWGC	4 cut(s)	270, 480, 498, 501
Tsp45I	GTSAC	2 cut(s)	391, 520
TspDTI	ATGAA	1 cut(s)	89
VneI	GTGCAC	1 cut(s)	424
VpaK11BI	GGWCC	2 cut(s)	414, 636
XagI	CCTNNNNNAGG	1 cut(s)	94
XcmI	CCANNNNNNNNNTGG	1 cut(s)	578
XspI	CTAG	2 cut(s)	173, 315
ZrmI	AGTACT	1 cut(s)	661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.