Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0017236

Physical Location & Seq

Genomic Coordinates Reverse (-)

16975580 .. 16976305

Gene Structure 726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1104100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCCTTAGAGGCTTTGAAATCCGCGAGTACCACCACTACTCCTTCTCCACCCTTTTCATCGTTTGAAAAGGTGGAGGATCGTCGCCACGGCAATCACCAAATCCACTCCAAAGAGCCATGGGCCAAACGGAAGCGCTCTAAGCGGCCGCGCAGCGAAGACCCGCCAACCGAAGAGGAGTACCTCGCTCTCTGCCTCATCATGCTCGCCCGCGGCACCACTAGTAGCTCTGAATTGCCGCCGCAGCCGCCGTCCCGAGACCTTTCTTACAAGTGCTCTGTTTGCAACAAGGGGTTCTCCTCTTACCAAGCTCTTGGCGGACACAAGGCCAGCCACCGCAAGTCCGACTCTTCCGCCGCCGCCATGGTCGACCATCAAATTGCCGCCGCTTCCTCCGTGACAACAACGAGCGGTAGGACCCACGAGTGCTCTATCTGCCACAAGACCTTCCGCACCGGCCAGGCACTGGGAGGCCACAAGCGCTGTCACTACCACGGCGGCAGCGCGGCCACGAGCGCTGTCACTACTTCCGAAGGCGGCGGTGCTGGGGCTTCCAGCCATAGTCAGAGTCATCAGAGTCAGCACGGATTTGACCTGAACATGCCGGCGTTGCCGGAGTTCTGGCCAGGGTTCGGCGGGGACAAGAAAAGTCAACTCTCCGGCGAGCAGGAGGTGCAGAGCCCGATGGTGGGAAAGAAGCCGCGGTGGTTGTTGGGTGGAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010117 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015979 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0035264 GO:0040007 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048589 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

242

Amino Acids

25.88

Weight (kDa)

9.15

Isoelectric Point (pI)

74.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	90 - 115	2.6e-13	C2H2-type zinc finger
zf-C2H2_6	PF13912	141 - 164	6.7e-10	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04120
malus_domestica	MD05G1098300.v1.1 MD10G1104100.v1.1
prunus_persica	Prupe.8G142400_v2.0.a1
pyrus_communis	pycom05g09620 pycom10g08950
rosa_chinensis	RchiOBHm_Chr6g0253491
rosa_laevigata	RLG00000015015
rosa_multiflora	Rmu_ssc0000079.1_g000007
rosa_rugosa	Rorug05G0544700
rosa_samantha	Rh6AG059700 Rh6BG053700 Rh6CG050800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	215
AccB7I	CCANNNNNTGG	1 cut(s)	466
AccBSI	CCGCTC	1 cut(s)	411
AccI	GTMKAC	1 cut(s)	369
AccII	CGCG	5 cut(s)	26, 151, 213, 506, 703
AclWI	GGATC	1 cut(s)	87
AcoI	YGGCCR	4 cut(s)	146, 457, 507, 623
AfaI	GTAC	2 cut(s)	31, 182
AfeI	AGCGCT	3 cut(s)	137, 482, 517
AfiI	CCNNNNNNNGG	4 cut(s)	466, 632, 688, 689
AgsI	TTSAA	2 cut(s)	19, 68
AhlI	ACTAGT	1 cut(s)	221
AjnI	CCWGG	2 cut(s)	459, 625
AluBI	AGCT	2 cut(s)	228, 311
AluI	AGCT	2 cut(s)	228, 311
Alw21I	GWGCWC	2 cut(s)	278, 431
Alw26I	GTCTC	1 cut(s)	252
AlwI	GGATC	1 cut(s)	87
AlwNI	CAGNNNCTG	1 cut(s)	466
Ama87I	CYCGRG	1 cut(s)	255
Aor51HI	AGCGCT	3 cut(s)	137, 482, 517
AoxI	GGCC	8 cut(s)	3, 123, 146, 327, 457, 472, 507, 623
ApeKI	GCWGC	3 cut(s)	153, 244, 501
AspLEI	GCGC	5 cut(s)	138, 153, 483, 506, 518
AspS9I	GGNCC	2 cut(s)	123, 417
AsuHPI	GGTGA	1 cut(s)	89
AvaI	CYCGRG	1 cut(s)	255
AvaII	GGWCC	1 cut(s)	417
BalI	TGGCCA	1 cut(s)	625
BanI	GGYRCC	1 cut(s)	215
BanII	GRGCYC	1 cut(s)	683
BauI	CACGAG	2 cut(s)	422, 511
BbsI	GAAGAC	1 cut(s)	165
Bbv12I	GWGCWC	2 cut(s)	278, 431
BbvI	GCAGC	3 cut(s)	165, 256, 513
BccI	CCATC	2 cut(s)	381, 679
BceAI	ACGGC	3 cut(s)	106, 235, 511
BciT130I	CCWGG	2 cut(s)	461, 627
BcoDI	GTCTC	1 cut(s)	252
BcuI	ACTAGT	1 cut(s)	221
BfaI	CTAG	1 cut(s)	222
BfoI	RGCGCY	3 cut(s)	139, 484, 519
BglI	GCCNNNNNGGC	1 cut(s)	11
Bme1390I	CCNGG	2 cut(s)	461, 627
Bme18I	GGWCC	1 cut(s)	417
BmeT110I	CYCGRG	1 cut(s)	255
BmgT120I	GGNCC	2 cut(s)	123, 417
BmiI	GGNNCC	2 cut(s)	217, 419
BmrFI	CCNGG	2 cut(s)	461, 627
BmrI	ACTGGG	1 cut(s)	476
BmuI	ACTGGG	1 cut(s)	476
BpiI	GAAGAC	1 cut(s)	165
BsaI	GGTCTC	1 cut(s)	252
BsaJI	CCNNGG	7 cut(s)	88, 119, 211, 363, 493, 626, 701
BsaXI	ACNNNNNCTCC	4 cut(s)	25, 31, 55, 61
Bsc4I	CCNNNNNNNGG	4 cut(s)	466, 632, 688, 689
Bse118I	RCCGGY	2 cut(s)	455, 604
Bse1I	ACTGG	1 cut(s)	471
BseBI	CCWGG	2 cut(s)	461, 627
BseDI	CCNNGG	7 cut(s)	88, 119, 211, 363, 493, 626, 701
BseLI	CCNNNNNNNGG	4 cut(s)	466, 632, 688, 689
BseNI	ACTGG	1 cut(s)	471
BseRI	GAGGAG	2 cut(s)	191, 289
BseX3I	CGGCCG	1 cut(s)	146
BseXI	GCAGC	3 cut(s)	165, 256, 513
BseYI	CCCAGC	1 cut(s)	545
BsgI	GTGCAG	1 cut(s)	695
Bsh1236I	CGCG	5 cut(s)	26, 151, 213, 506, 703
Bsh1285I	CGRYCG	1 cut(s)	149
BshFI	GGCC	8 cut(s)	5, 125, 148, 329, 459, 474, 509, 625
BshNI	GGYRCC	1 cut(s)	215
BsiEI	CGRYCG	1 cut(s)	149
BsiHKAI	GWGCWC	2 cut(s)	278, 431
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	4 cut(s)	456, 605, 614, 660
BslFI	GGGAC	2 cut(s)	238, 653
BslI	CCNNNNNNNGG	4 cut(s)	466, 632, 688, 689
BsmAI	GTCTC	1 cut(s)	252
BsmFI	GGGAC	2 cut(s)	238, 653
BsnI	GGCC	8 cut(s)	5, 125, 148, 329, 459, 474, 509, 625
Bso31I	GGTCTC	1 cut(s)	252
BsoBI	CYCGRG	1 cut(s)	255
Bsp1286I	GDGCHC	3 cut(s)	278, 431, 683
Bsp143I	GATC	1 cut(s)	79
Bsp19I	CCATGG	2 cut(s)	119, 363
BspANI	GGCC	8 cut(s)	5, 125, 148, 329, 459, 474, 509, 625
BspFNI	CGCG	5 cut(s)	26, 151, 213, 506, 703
BspLI	GGNNCC	2 cut(s)	217, 419
BspPI	GGATC	1 cut(s)	87
BspT107I	GGYRCC	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	252
BsrBI	CCGCTC	1 cut(s)	411
BsrFI	RCCGGY	2 cut(s)	455, 604
BsrI	ACTGG	1 cut(s)	471
BssAI	RCCGGY	2 cut(s)	455, 604
BssECI	CCNNGG	7 cut(s)	88, 119, 211, 363, 493, 626, 701
BssMI	GATC	1 cut(s)	79
BssSI	CACGAG	2 cut(s)	422, 511
BssT1I	CCWWGG	2 cut(s)	119, 363
Bst2BI	CACGAG	2 cut(s)	422, 511
Bst2UI	CCWGG	2 cut(s)	461, 627
Bst6I	CTCTTC	2 cut(s)	168, 355
BstAPI	GCANNNNNTGC	1 cut(s)	673
BstC8I	GCNNGC	5 cut(s)	207, 211, 331, 606, 665
BstDEI	CTNAG	2 cut(s)	7, 141
BstDSI	CCRYGG	6 cut(s)	88, 119, 211, 363, 493, 701
BstFNI	CGCG	5 cut(s)	26, 151, 213, 506, 703
BstH2I	RGCGCY	3 cut(s)	139, 484, 519
BstHHI	GCGC	5 cut(s)	138, 153, 483, 506, 518
BstKTI	GATC	1 cut(s)	82
BstMAI	GTCTC	1 cut(s)	252
BstMBI	GATC	1 cut(s)	79
BstMCI	CGRYCG	1 cut(s)	149
BstNI	CCWGG	2 cut(s)	461, 627
BstNSI	RCATGY	1 cut(s)	604
BstSCI	CCNGG	2 cut(s)	459, 625
BstUI	CGCG	5 cut(s)	26, 151, 213, 506, 703
BstV1I	GCAGC	3 cut(s)	165, 256, 513
BstV2I	GAAGAC	1 cut(s)	165
BstXI	CCANNNNNNTGG	1 cut(s)	314
BstZI	CGGCCG	1 cut(s)	146
BsuRI	GGCC	8 cut(s)	5, 125, 148, 329, 459, 474, 509, 625
BtgI	CCRYGG	6 cut(s)	88, 119, 211, 363, 493, 701
BtsIMutI	CAGTG	1 cut(s)	464
Cac8I	GCNNGC	5 cut(s)	207, 211, 331, 606, 665
CaiI	CAGNNNCTG	1 cut(s)	466
CciNI	GCGGCCGC	1 cut(s)	146
CfoI	GCGC	5 cut(s)	138, 153, 483, 506, 518
Cfr10I	RCCGGY	2 cut(s)	455, 604
Cfr13I	GGNCC	2 cut(s)	123, 417
Cfr42I	CCGCGG	2 cut(s)	214, 704
Csp6I	GTAC	2 cut(s)	30, 181
CviAII	CATG	4 cut(s)	120, 202, 364, 601
CviQI	GTAC	2 cut(s)	30, 181
DdeI	CTNAG	2 cut(s)	7, 141
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
EaeI	YGGCCR	4 cut(s)	146, 457, 507, 623
EagI	CGGCCG	1 cut(s)	146
Eam1104I	CTCTTC	2 cut(s)	168, 355
EarI	CTCTTC	2 cut(s)	168, 355
EciI	GGCGGA	2 cut(s)	333, 343
EclXI	CGGCCG	1 cut(s)	146
Eco130I	CCWWGG	2 cut(s)	119, 363
Eco24I	GRGCYC	1 cut(s)	683
Eco31I	GGTCTC	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	417
Eco47III	AGCGCT	3 cut(s)	137, 482, 517
Eco52I	CGGCCG	1 cut(s)	146
Eco88I	CYCGRG	1 cut(s)	255
EcoO109I	RGGNCCY	1 cut(s)	417
EcoRII	CCWGG	2 cut(s)	459, 625
EcoT14I	CCWWGG	2 cut(s)	119, 363
EcoT38I	GRGCYC	1 cut(s)	683
ErhI	CCWWGG	2 cut(s)	119, 363
FaeI	CATG	4 cut(s)	123, 205, 367, 604
FaiI	YATR	5 cut(s)	121, 203, 365, 561, 602
FaqI	GGGAC	2 cut(s)	238, 653
FatI	CATG	4 cut(s)	119, 201, 363, 600
FauI	CCCGC	3 cut(s)	171, 218, 629
FblI	GTMKAC	1 cut(s)	369
FriOI	GRGCYC	1 cut(s)	683
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	5 cut(s)	137, 152, 482, 505, 517
GsaI	CCCAGC	1 cut(s)	549
HaeII	RGCGCY	3 cut(s)	139, 484, 519
HaeIII	GGCC	8 cut(s)	5, 125, 148, 329, 459, 474, 509, 625
HapII	CCGG	4 cut(s)	456, 605, 614, 660
HhaI	GCGC	5 cut(s)	138, 153, 483, 506, 518
Hin1II	CATG	4 cut(s)	123, 205, 367, 604
Hin6I	GCGC	5 cut(s)	136, 151, 481, 504, 516
HinP1I	GCGC	5 cut(s)	136, 151, 481, 504, 516
HincII	GTYRAC	2 cut(s)	370, 653
HindII	GTYRAC	2 cut(s)	370, 653
HinfI	GANTC	3 cut(s)	347, 568, 577
HpaII	CCGG	4 cut(s)	456, 605, 614, 660
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	2 cut(s)	370, 653
Hpy188I	TCNGA	5 cut(s)	232, 346, 532, 567, 576
Hpy188III	TCNNGA	1 cut(s)	255
Hpy8I	GTNNAC	2 cut(s)	370, 653
Hpy99I	CGWCG	1 cut(s)	87
HpyAV	CCTTC	3 cut(s)	54, 457, 527
HpyCH4V	TGCA	2 cut(s)	285, 676
HpyF3I	CTNAG	2 cut(s)	7, 141
Hsp92II	CATG	4 cut(s)	123, 205, 367, 604
HspAI	GCGC	5 cut(s)	136, 151, 481, 504, 516
KroI	GCCGGC	1 cut(s)	604
KroNI	GCCGGC	1 cut(s)	606
KspI	CCGCGG	2 cut(s)	214, 704
Kzo9I	GATC	1 cut(s)	79
Lsp1109I	GCAGC	3 cut(s)	165, 256, 513
MaeI	CTAG	1 cut(s)	222
MaeIII	GTNAC	3 cut(s)	397, 485, 520
MalI	GATC	1 cut(s)	81
MbiI	CCGCTC	1 cut(s)	411
MboI	GATC	1 cut(s)	79
MboII	GAAGA	3 cut(s)	170, 185, 342
MhlI	GDGCHC	3 cut(s)	278, 431, 683
MlsI	TGGCCA	1 cut(s)	625
MluCI	AATT	2 cut(s)	233, 378
MluNI	TGGCCA	1 cut(s)	625
MlyI	GAGTC	3 cut(s)	341, 577, 586
MmeI	TCCRAC	1 cut(s)	369
MnlI	CCTC	9 cut(s)	4, 70, 169, 194, 206, 310, 403, 464, 664
Mox20I	TGGCCA	1 cut(s)	625
MroNI	GCCGGC	1 cut(s)	604
MscI	TGGCCA	1 cut(s)	625
MseI	TTAA	1 cut(s)	724
Msp20I	TGGCCA	1 cut(s)	625
MspA1I	CMGCKG	2 cut(s)	213, 703
MspI	CCGG	4 cut(s)	456, 605, 614, 660
MspR9I	CCNGG	2 cut(s)	461, 627
MvaI	CCWGG	2 cut(s)	461, 627
MvnI	CGCG	5 cut(s)	26, 151, 213, 506, 703
NaeI	GCCGGC	1 cut(s)	606
NcoI	CCATGG	2 cut(s)	119, 363
NdeII	GATC	1 cut(s)	79
NgoMIV	GCCGGC	1 cut(s)	604
NlaIII	CATG	4 cut(s)	123, 205, 367, 604
NlaIV	GGNNCC	2 cut(s)	217, 419
NmuCI	GTSAC	3 cut(s)	397, 485, 520
NotI	GCGGCCGC	1 cut(s)	146
NspI	RCATGY	1 cut(s)	604
PdiI	GCCGGC	1 cut(s)	606
PflMI	CCANNNNNTGG	1 cut(s)	466
PleI	GAGTC	3 cut(s)	341, 576, 585
PpsI	GAGTC	3 cut(s)	341, 576, 585
PpuMI	RGGWCCY	1 cut(s)	417
Psp5II	RGGWCCY	1 cut(s)	417
Psp6I	CCWGG	2 cut(s)	459, 625
PspFI	CCCAGC	1 cut(s)	545
PspGI	CCWGG	2 cut(s)	459, 625
PspN4I	GGNNCC	2 cut(s)	217, 419
PspPI	GGNCC	2 cut(s)	123, 417
PspPPI	RGGWCCY	1 cut(s)	417
PstNI	CAGNNNCTG	1 cut(s)	466
RsaI	GTAC	2 cut(s)	31, 182
RsaNI	GTAC	2 cut(s)	30, 181
SacII	CCGCGG	2 cut(s)	214, 704
SalI	GTCGAC	1 cut(s)	368
SaqAI	TTAA	1 cut(s)	724
Sau3AI	GATC	1 cut(s)	79
Sau96I	GGNCC	2 cut(s)	123, 417
SchI	GAGTC	3 cut(s)	341, 577, 586
ScrFI	CCNGG	2 cut(s)	461, 627
SduI	GDGCHC	3 cut(s)	278, 431, 683
SetI	ASST	8 cut(s)	75, 186, 230, 264, 313, 449, 597, 675
Sfr303I	CCGCGG	2 cut(s)	214, 704
SgrBI	CCGCGG	2 cut(s)	214, 704
SinI	GGWCC	1 cut(s)	417
SpeI	ACTAGT	1 cut(s)	221
Sse9I	AATT	2 cut(s)	233, 378
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	2 cut(s)	459, 625
StyI	CCWWGG	2 cut(s)	119, 363
TaqI	TCGA	1 cut(s)	369
TasI	AATT	2 cut(s)	233, 378
Tru1I	TTAA	1 cut(s)	724
Tru9I	TTAA	1 cut(s)	724
TscAI	CASTG	1 cut(s)	471
TseFI	GTSAC	3 cut(s)	397, 485, 520
TseI	GCWGC	3 cut(s)	153, 244, 501
Tsp45I	GTSAC	3 cut(s)	397, 485, 520
TspDTI	ATGAA	1 cut(s)	48
TspGWI	ACGGA	3 cut(s)	145, 385, 600
TspRI	CASTG	1 cut(s)	471
Van91I	CCANNNNNTGG	1 cut(s)	466
VpaK11BI	GGWCC	1 cut(s)	417
XceI	RCATGY	1 cut(s)	604
XmiI	GTMKAC	1 cut(s)	369
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.