Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0017236

Physical Location & Seq

Genomic Coordinates Reverse (-)

15967217 .. 15968121

Gene Structure 905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G142400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCCTTGGAGGCTTTGAAATCCCCCAGCACCCCTTCCCCTCCCTTCTCATCTTTTGAGGAAGTGGAGGATCGCCACCTCAACCAGTCCCAGGAGCCATGGGCCAAGAGGAAGCGCTCTAAGCGGCCACGTGTTGACGACCCACCAACGGAGGAAGAGTACCTTGCTCTCTGCCTCATCATGCTCGCCCGCGGCACCACCGCCGACGCAGATGCTGAGCTGCCTCCTCAGCCGCCGTCTCTGAAGCTCTCTTACAAGTGCTCTGTCTGCAACAAGGCCTTCTCTTCTTACCAAGCCCTCGGCGGCCACAAGGCCAGCCACCGCAAATCAGACTCCTCTGCGGCTTCCGCCGCCGTCAACTCCACCGACAACCCGTCAACCGCCACCGCCACTACAAGCGGTAGGACCCATGAGTGTTCTATTTGTCACAAGACTTTCCCCACCGGCCAGGCCCTGGGAGGCCACAAGCGCTGTCACTACGACGGCGGCAGCGGCGCAACCAGTGCCCTCACCACGTCAGACGGCGGAGGCGCTGGGGCCTCCAGCCACAGCCACAGTCAAAGTCAGAGTCACCAGAGTCAACGCGGCTTCGACCTGAACCTTCCGGCGTTGCCGGAGTTCTGGCCGGGGTTCGGAGGACACAAGAAAAGTCAACTATCTGTCGAGCAGGAGGTGCAGAGTCCGATGCTGGGGAAGAAACCGCGGTGGCTGTTGGGTCGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010117 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015979 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0035264 GO:0040007 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048589 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

242

Amino Acids

25.81

Weight (kDa)

8.51

Isoelectric Point (pI)

76.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04120
malus_domestica	MD05G1098300.v1.1 MD10G1104100.v1.1
prunus_persica	Prupe.8G142400_v2.0.a1
pyrus_communis	pycom05g09620 pycom10g08950
rosa_chinensis	RchiOBHm_Chr6g0253491
rosa_laevigata	RLG00000015015
rosa_multiflora	Rmu_ssc0000079.1_g000007
rosa_rugosa	Rorug05G0544700
rosa_samantha	Rh6AG059700 Rh6BG053700 Rh6CG050800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	194
AccB7I	CCANNNNNTGG	1 cut(s)	454
AccII	CGCG	3 cut(s)	192, 585, 703
AclWI	GGATC	1 cut(s)	78
AcoI	YGGCCR	4 cut(s)	125, 304, 445, 623
AcuI	CTGAAG	1 cut(s)	263
AcvI	CACGTG	1 cut(s)	131
AfaI	GTAC	1 cut(s)	161
AfeI	AGCGCT	2 cut(s)	116, 470
AfiI	CCNNNNNNNGG	5 cut(s)	91, 148, 454, 632, 689
AflIII	ACRYGT	1 cut(s)	130
AgsI	TTSAA	1 cut(s)	19
AhdI	GACNNNNNGTC	1 cut(s)	373
AjiI	CACGTC	1 cut(s)	516
AjnI	CCWGG	3 cut(s)	90, 447, 453
AluBI	AGCT	2 cut(s)	220, 247
AluI	AGCT	2 cut(s)	220, 247
Alw21I	GWGCWC	1 cut(s)	263
Alw26I	GTCTC	1 cut(s)	243
AlwI	GGATC	1 cut(s)	78
AlwNI	CAGNNNCTG	2 cut(s)	215, 454
Aor51HI	AGCGCT	2 cut(s)	116, 470
ApeKI	GCWGC	2 cut(s)	220, 489
ArsI	GACNNNNNNTTYG	2 cut(s)	553, 585
AspLEI	GCGC	4 cut(s)	117, 471, 497, 533
AspS9I	GGNCC	4 cut(s)	102, 405, 451, 537
AsuC2I	CCSGG	1 cut(s)	627
AsuHPI	GGTGA	2 cut(s)	502, 563
AvaII	GGWCC	1 cut(s)	405
BaeGI	GKGCMC	1 cut(s)	508
BanI	GGYRCC	1 cut(s)	194
BarI	GAAGNNNNNNTAC	2 cut(s)	236, 268
BbrPI	CACGTG	1 cut(s)	131
Bbv12I	GWGCWC	1 cut(s)	263
BbvCI	CCTCAGC	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	207, 501
BceAI	ACGGC	4 cut(s)	220, 338, 499, 538
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BciT130I	CCWGG	3 cut(s)	92, 449, 455
BcnI	CCSGG	1 cut(s)	627
BcoDI	GTCTC	1 cut(s)	243
BfoI	RGCGCY	3 cut(s)	118, 472, 534
BglI	GCCNNNNNGGC	1 cut(s)	11
BlpI	GCTNAGC	1 cut(s)	216
Bme1390I	CCNGG	4 cut(s)	92, 449, 455, 627
Bme18I	GGWCC	1 cut(s)	405
BmeRI	GACNNNNNGTC	1 cut(s)	373
BmgBI	CACGTC	1 cut(s)	516
BmgT120I	GGNCC	4 cut(s)	102, 405, 451, 537
BmiI	GGNNCC	4 cut(s)	96, 196, 407, 538
BmrFI	CCNGG	4 cut(s)	92, 449, 455, 627
BmsI	GCATC	2 cut(s)	202, 675
BpmI	CTGGAG	1 cut(s)	526
Bpu10I	CCTNAGC	1 cut(s)	228
Bpu1102I	GCTNAGC	1 cut(s)	216
BpuMI	CCSGG	1 cut(s)	627
BsaAI	YACGTR	1 cut(s)	131
BsaJI	CCNNGG	9 cut(s)	6, 90, 98, 190, 298, 453, 454, 626, 701
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	5 cut(s)	91, 148, 454, 632, 689
Bse118I	RCCGGY	1 cut(s)	443
Bse1I	ACTGG	2 cut(s)	85, 501
BseBI	CCWGG	3 cut(s)	92, 449, 455
BseDI	CCNNGG	9 cut(s)	6, 90, 98, 190, 298, 453, 454, 626, 701
BseLI	CCNNNNNNNGG	5 cut(s)	91, 148, 454, 632, 689
BseMII	CTCAG	2 cut(s)	207, 242
BseNI	ACTGG	2 cut(s)	85, 501
BseRI	GAGGAG	2 cut(s)	216, 325
BseSI	GKGCMC	1 cut(s)	508
BseXI	GCAGC	2 cut(s)	207, 501
BseYI	CCCAGC	3 cut(s)	26, 533, 688
BsgI	GTGCAG	1 cut(s)	695
Bsh1236I	CGCG	3 cut(s)	192, 585, 703
BshNI	GGYRCC	1 cut(s)	194
BsiHKAI	GWGCWC	1 cut(s)	263
BsiSI	CCGG	4 cut(s)	444, 605, 614, 626
BslFI	GGGAC	1 cut(s)	73
BslI	CCNNNNNNNGG	5 cut(s)	91, 148, 454, 632, 689
BsmAI	GTCTC	1 cut(s)	243
BsmBI	CGTCTC	1 cut(s)	243
BsmFI	GGGAC	1 cut(s)	73
Bsp1286I	GDGCHC	2 cut(s)	263, 508
Bsp143I	GATC	1 cut(s)	70
Bsp1720I	GCTNAGC	1 cut(s)	216
Bsp19I	CCATGG	1 cut(s)	98
BspCNI	CTCAG	2 cut(s)	208, 241
BspFNI	CGCG	3 cut(s)	192, 585, 703
BspLI	GGNNCC	4 cut(s)	96, 196, 407, 538
BspPI	GGATC	1 cut(s)	78
BspT107I	GGYRCC	1 cut(s)	194
BsrFI	RCCGGY	1 cut(s)	443
BsrI	ACTGG	2 cut(s)	85, 501
BssAI	RCCGGY	1 cut(s)	443
BssECI	CCNNGG	9 cut(s)	6, 90, 98, 190, 298, 453, 454, 626, 701
BssMI	GATC	1 cut(s)	70
BssT1I	CCWWGG	2 cut(s)	6, 98
Bst2UI	CCWGG	3 cut(s)	92, 449, 455
Bst4CI	ACNGT	1 cut(s)	557
Bst6I	CTCTTC	2 cut(s)	150, 289
BstAPI	GCANNNNNTGC	2 cut(s)	503, 673
BstBAI	YACGTR	1 cut(s)	131
BstC8I	GCNNGC	3 cut(s)	186, 190, 316
BstDEI	CTNAG	3 cut(s)	120, 216, 228
BstDSI	CCRYGG	3 cut(s)	98, 190, 701
BstFNI	CGCG	3 cut(s)	192, 585, 703
BstH2I	RGCGCY	3 cut(s)	118, 472, 534
BstHHI	GCGC	4 cut(s)	117, 471, 497, 533
BstKTI	GATC	1 cut(s)	73
BstMAI	GTCTC	1 cut(s)	243
BstMBI	GATC	1 cut(s)	70
BstNI	CCWGG	3 cut(s)	92, 449, 455
BstSCI	CCNGG	4 cut(s)	90, 447, 453, 625
BstSLI	GKGCMC	1 cut(s)	508
BstUI	CGCG	3 cut(s)	192, 585, 703
BstV1I	GCAGC	2 cut(s)	207, 501
BtgI	CCRYGG	3 cut(s)	98, 190, 701
BtrI	CACGTC	1 cut(s)	516
BtsIMutI	CAGTG	1 cut(s)	508
Cac8I	GCNNGC	3 cut(s)	186, 190, 316
CaiI	CAGNNNCTG	2 cut(s)	215, 454
CfoI	GCGC	4 cut(s)	117, 471, 497, 533
Cfr10I	RCCGGY	1 cut(s)	443
Cfr13I	GGNCC	4 cut(s)	102, 405, 451, 537
Cfr42I	CCGCGG	2 cut(s)	193, 704
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	3 cut(s)	99, 181, 410
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	3 cut(s)	120, 216, 228
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
DriI	GACNNNNNGTC	1 cut(s)	373
EaeI	YGGCCR	4 cut(s)	125, 304, 445, 623
Eam1104I	CTCTTC	2 cut(s)	150, 289
Eam1105I	GACNNNNNGTC	1 cut(s)	373
EarI	CTCTTC	2 cut(s)	150, 289
EciI	GGCGGA	2 cut(s)	337, 540
Eco130I	CCWWGG	2 cut(s)	6, 98
Eco147I	AGGCCT	1 cut(s)	278
Eco47I	GGWCC	1 cut(s)	405
Eco47III	AGCGCT	2 cut(s)	116, 470
Eco57I	CTGAAG	1 cut(s)	263
Eco72I	CACGTG	1 cut(s)	131
EcoO109I	RGGNCCY	3 cut(s)	405, 451, 537
EcoRII	CCWGG	3 cut(s)	90, 447, 453
EcoT14I	CCWWGG	2 cut(s)	6, 98
ErhI	CCWWGG	2 cut(s)	6, 98
Esp3I	CGTCTC	1 cut(s)	243
FaeI	CATG	3 cut(s)	102, 184, 413
FaiI	YATR	3 cut(s)	100, 182, 411
FalI	AAGNNNNNCTT	2 cut(s)	147, 179
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	3 cut(s)	98, 180, 409
FauI	CCCGC	1 cut(s)	197
GlaI	GCGC	4 cut(s)	116, 470, 496, 532
GsaI	CCCAGC	3 cut(s)	30, 537, 692
GsuI	CTGGAG	1 cut(s)	526
HaeII	RGCGCY	3 cut(s)	118, 472, 534
HapII	CCGG	4 cut(s)	444, 605, 614, 626
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	4 cut(s)	117, 471, 497, 533
Hin1II	CATG	3 cut(s)	102, 184, 413
Hin6I	GCGC	4 cut(s)	115, 469, 495, 531
HinP1I	GCGC	4 cut(s)	115, 469, 495, 531
HincII	GTYRAC	5 cut(s)	136, 358, 378, 581, 653
HindII	GTYRAC	5 cut(s)	136, 358, 378, 581, 653
HinfI	GANTC	4 cut(s)	332, 568, 577, 679
HpaII	CCGG	4 cut(s)	444, 605, 614, 626
HphI	GGTGA	2 cut(s)	502, 563
Hpy166II	GTNNAC	5 cut(s)	136, 358, 378, 581, 653
Hpy188I	TCNGA	6 cut(s)	243, 331, 520, 567, 635, 684
Hpy188III	TCNNGA	1 cut(s)	719
Hpy8I	GTNNAC	5 cut(s)	136, 358, 378, 581, 653
Hpy99I	CGWCG	2 cut(s)	209, 485
HpyAV	CCTTC	4 cut(s)	45, 55, 289, 611
HpyCH4III	ACNGT	1 cut(s)	557
HpyCH4IV	ACGT	2 cut(s)	130, 515
HpyCH4V	TGCA	2 cut(s)	270, 676
HpyF3I	CTNAG	3 cut(s)	120, 216, 228
HpySE526I	ACGT	2 cut(s)	130, 515
Hsp92II	CATG	3 cut(s)	102, 184, 413
HspAI	GCGC	4 cut(s)	115, 469, 495, 531
KspI	CCGCGG	2 cut(s)	193, 704
Kzo9I	GATC	1 cut(s)	70
LmnI	GCTCC	1 cut(s)	94
Lsp1109I	GCAGC	2 cut(s)	207, 501
LweI	GCATC	2 cut(s)	202, 675
MaeII	ACGT	2 cut(s)	130, 515
MaeIII	GTNAC	3 cut(s)	425, 473, 569
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MboII	GAAGA	3 cut(s)	167, 276, 706
MhlI	GDGCHC	2 cut(s)	263, 508
MlyI	GAGTC	4 cut(s)	326, 577, 586, 688
MspA1I	CMGCKG	3 cut(s)	192, 492, 703
MspI	CCGG	4 cut(s)	444, 605, 614, 626
MspR9I	CCNGG	4 cut(s)	92, 449, 455, 627
MvaI	CCWGG	3 cut(s)	92, 449, 455
MvnI	CGCG	3 cut(s)	192, 585, 703
NciI	CCSGG	1 cut(s)	627
NcoI	CCATGG	1 cut(s)	98
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	3 cut(s)	102, 184, 413
NlaIV	GGNNCC	4 cut(s)	96, 196, 407, 538
NmeAIII	GCCGAG	1 cut(s)	279
NmuCI	GTSAC	3 cut(s)	425, 473, 569
PasI	CCCWGGG	1 cut(s)	454
PceI	AGGCCT	1 cut(s)	278
PflMI	CCANNNNNTGG	1 cut(s)	454
PleI	GAGTC	4 cut(s)	326, 576, 585, 687
PmaCI	CACGTG	1 cut(s)	131
PmlI	CACGTG	1 cut(s)	131
PpsI	GAGTC	4 cut(s)	326, 576, 585, 687
Ppu21I	YACGTR	1 cut(s)	131
PpuMI	RGGWCCY	1 cut(s)	405
Psp5II	RGGWCCY	1 cut(s)	405
Psp6I	CCWGG	3 cut(s)	90, 447, 453
PspCI	CACGTG	1 cut(s)	131
PspFI	CCCAGC	3 cut(s)	26, 533, 688
PspGI	CCWGG	3 cut(s)	90, 447, 453
PspN4I	GGNNCC	4 cut(s)	96, 196, 407, 538
PspPI	GGNCC	4 cut(s)	102, 405, 451, 537
PspPPI	RGGWCCY	1 cut(s)	405
PstNI	CAGNNNCTG	2 cut(s)	215, 454
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SacII	CCGCGG	2 cut(s)	193, 704
Sau3AI	GATC	1 cut(s)	70
Sau96I	GGNCC	4 cut(s)	102, 405, 451, 537
SchI	GAGTC	4 cut(s)	326, 577, 586, 688
ScrFI	CCNGG	4 cut(s)	92, 449, 455, 627
SduI	GDGCHC	2 cut(s)	263, 508
SetI	ASST	9 cut(s)	81, 133, 165, 222, 249, 518, 597, 603, 675
SfaNI	GCATC	2 cut(s)	202, 675
Sfr303I	CCGCGG	2 cut(s)	193, 704
SgrBI	CCGCGG	2 cut(s)	193, 704
SinI	GGWCC	1 cut(s)	405
SseBI	AGGCCT	1 cut(s)	278
StuI	AGGCCT	1 cut(s)	278
StyD4I	CCNGG	4 cut(s)	90, 447, 453, 625
StyI	CCWWGG	2 cut(s)	6, 98
TaaI	ACNGT	1 cut(s)	557
TaiI	ACGT	2 cut(s)	133, 518
TaqI	TCGA	3 cut(s)	591, 663, 718
TauI	GCSGC	9 cut(s)	127, 195, 235, 306, 344, 353, 489, 495, 588
TscAI	CASTG	1 cut(s)	508
TseFI	GTSAC	3 cut(s)	425, 473, 569
TseI	GCWGC	2 cut(s)	220, 489
Tsp45I	GTSAC	3 cut(s)	425, 473, 569
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	1 cut(s)	508
Van91I	CCANNNNNTGG	1 cut(s)	454
VpaK11BI	GGWCC	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.