FvH4_2g05171

protein dimerization activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0017594
Physical Location & Seq
Forward (+)
4254989 .. 4255354
366 bp
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UTR
Exon/CDS
Intron
FvH4_2g05171.t1

Sequence Viewer

Length: 366 bp
ATGGCATCGAGTATGAAAATCAAGTACGAGAAGTATTTTGCTACCTTAGATGATTGCAACCAGCTTATGTTCATTGCCTTGGTGTTAAACCCAAGATACAAGATCAGAAACTTCGAAAGTATATGCAAGAAATGGCTGAAGATGGGGTATGTTGAAATTAAGAAGAAGTCTGCTAAGGTTAAAGAGCTTATGGTGGAGCTTTGTGATCTTTACAACAGCTCAATGAATGTTCCATCATCTTCCAAATCAGGAAAATCTAGGAGTGGAGAGAGCAGTCAAAGCATAGTTAGCCAAGCCAACAAATCCTCATCTAAAAAGAGTACCGTAGAGGCTACTGGAATCATAAAAGACATGGAAGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413

Protein Analysis

122

Amino Acids

13.68

Weight (kDa)

9.32

Isoelectric Point (pI)

42.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
hAT-like_RNase-H PF14372 1 - 65 2.7e-08 hAT-like transposase, RNase-H fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 158
AfaI GTAC 2 cut(s) 26, 322
AgsI TTSAA 1 cut(s) 155
AluBI AGCT 4 cut(s) 64, 187, 199, 219
AluI AGCT 4 cut(s) 64, 187, 199, 219
AsuII TTCGAA 1 cut(s) 114
BccI CCATC 2 cut(s) 136, 241
BfaI CTAG 1 cut(s) 258
BmsI GCATC 1 cut(s) 14
Bpu10I CCTNAGC 1 cut(s) 174
Bpu14I TTCGAA 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 78
Bse1I ACTGG 1 cut(s) 340
Bse3DI GCAATG 1 cut(s) 72
BseDI CCNNGG 1 cut(s) 78
BseMI GCAATG 1 cut(s) 72
BseNI ACTGG 1 cut(s) 340
Bsp119I TTCGAA 1 cut(s) 114
Bsp143I GATC 2 cut(s) 102, 205
BspT104I TTCGAA 1 cut(s) 114
BsrDI GCAATG 1 cut(s) 72
BsrI ACTGG 1 cut(s) 340
BssECI CCNNGG 1 cut(s) 78
BssMI GATC 2 cut(s) 102, 205
BssT1I CCWWGG 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 325
BstBI TTCGAA 1 cut(s) 114
BstDEI CTNAG 2 cut(s) 46, 174
BstKTI GATC 2 cut(s) 105, 208
BstMBI GATC 2 cut(s) 102, 205
BstMWI GCNNNNNNNGC 2 cut(s) 279, 288
Csp6I GTAC 2 cut(s) 25, 321
CviAII CATG 1 cut(s) 352
CviJI RGCY 8 cut(s) 64, 136, 187, 199, 219, 291, 296, 332
CviKI_1 RGCY 8 cut(s) 64, 136, 187, 199, 219, 291, 296, 332
CviQI GTAC 2 cut(s) 25, 321
DdeI CTNAG 2 cut(s) 46, 174
DpnI GATC 2 cut(s) 104, 207
DpnII GATC 2 cut(s) 102, 205
Eco130I CCWWGG 1 cut(s) 78
Eco57I CTGAAG 1 cut(s) 158
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
FaeI CATG 1 cut(s) 355
FaiI YATR 9 cut(s) 14, 68, 122, 124, 150, 191, 284, 344, 353
FatI CATG 1 cut(s) 351
FspBI CTAG 1 cut(s) 258
Hin1II CATG 1 cut(s) 355
HinfI GANTC 1 cut(s) 339
Hpy188I TCNGA 1 cut(s) 107
Hpy188III TCNNGA 1 cut(s) 249
HpyCH4III ACNGT 1 cut(s) 325
HpyCH4V TGCA 2 cut(s) 57, 126
HpyF10VI GCNNNNNNNGC 2 cut(s) 279, 288
HpyF3I CTNAG 2 cut(s) 46, 174
Hsp92II CATG 1 cut(s) 355
Kzo9I GATC 2 cut(s) 102, 205
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 3 cut(s) 74, 234, 321
LweI GCATC 1 cut(s) 14
MaeI CTAG 1 cut(s) 258
MalI GATC 2 cut(s) 104, 207
MboI GATC 2 cut(s) 102, 205
MboII GAAGA 3 cut(s) 151, 175, 231
MluCI AATT 1 cut(s) 156
MnlI CCTC 2 cut(s) 316, 322
MseI TTAA 3 cut(s) 86, 159, 180
MwoI GCNNNNNNNGC 2 cut(s) 279, 288
NdeII GATC 2 cut(s) 102, 205
NlaIII CATG 1 cut(s) 355
NspV TTCGAA 1 cut(s) 114
PfeI GAWTC 1 cut(s) 339
RsaI GTAC 2 cut(s) 26, 322
RsaNI GTAC 2 cut(s) 25, 321
SaqAI TTAA 3 cut(s) 86, 159, 180
Sau3AI GATC 2 cut(s) 102, 205
SetI ASST 6 cut(s) 47, 66, 180, 189, 201, 221
SfaNI GCATC 1 cut(s) 14
SfuI TTCGAA 1 cut(s) 114
Sse9I AATT 1 cut(s) 156
SspMI CTAG 1 cut(s) 258
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 1 cut(s) 325
TaqI TCGA 2 cut(s) 8, 114
TasI AATT 1 cut(s) 156
TfiI GAWTC 1 cut(s) 339
Tru1I TTAA 3 cut(s) 86, 159, 180
Tru9I TTAA 3 cut(s) 86, 159, 180
TspDTI ATGAA 3 cut(s) 29, 61, 239
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.