Rroxscaffold_2G00142030

protein dimerization activity

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
80214379 .. 80216684
2306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00142030.1

Sequence Viewer

Length: 297 bp
ATGGATGATGGTGAAGCTAAAGAGAGGGAAACAAAGGTTAAAGATCAGCTAGTAGCCTTGATCGATACATATGCAGCTTCAATGAATTTAGCCTCAAACCAAAAGGAGAAGGTCACTAATGGATCGAGGCATTCTAGTACGAGAGGTGTTACCGGCAAGATGACCGCAATGATGGATAATTGGGCGAAAGAACTTGAGAACAACAATGAAATTGTGGTGGAGTGTGAAGTTGATCGATACATTATTGATCCCTTCGAGAGGCCTAAAGTGGGGGAAACCTTTGAAATTTTAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

98

Amino Acids

11.08

Weight (kDa)

4.77

Isoelectric Point (pI)

14.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 165
AclWI GGATC 2 cut(s) 130, 242
AcsI RAATTY 2 cut(s) 85, 285
AfaI GTAC 1 cut(s) 139
AfiI CCNNNNNNNGG 2 cut(s) 258, 269
AgsI TTSAA 2 cut(s) 81, 284
AluBI AGCT 3 cut(s) 17, 49, 77
AluI AGCT 3 cut(s) 17, 49, 77
AlwI GGATC 2 cut(s) 130, 242
AoxI GGCC 1 cut(s) 260
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 2 cut(s) 85, 285
AsuHPI GGTGA 1 cut(s) 23
BbvI GCAGC 1 cut(s) 86
BccI CCATC 2 cut(s) 2, 166
BcgI CGANNNNNNTGC 2 cut(s) 53, 87
BfaI CTAG 2 cut(s) 50, 135
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
BpuEI CTTGAG 1 cut(s) 215
Bsa29I ATCGAT 2 cut(s) 63, 235
Bsc4I CCNNNNNNNGG 2 cut(s) 258, 269
Bse118I RCCGGY 1 cut(s) 152
Bse3DI GCAATG 1 cut(s) 174
BseCI ATCGAT 2 cut(s) 63, 235
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 2 cut(s) 258, 269
BseMI GCAATG 1 cut(s) 174
BseXI GCAGC 1 cut(s) 86
BshFI GGCC 1 cut(s) 262
BshVI ATCGAT 2 cut(s) 63, 235
BsiSI CCGG 1 cut(s) 153
BslI CCNNNNNNNGG 2 cut(s) 258, 269
BsmI GAATGC 1 cut(s) 130
BsnI GGCC 1 cut(s) 262
Bsp143I GATC 5 cut(s) 43, 60, 122, 232, 247
BspACI CCGC 1 cut(s) 165
BspANI GGCC 1 cut(s) 262
BspDI ATCGAT 2 cut(s) 63, 235
BspPI GGATC 2 cut(s) 130, 242
BsrDI GCAATG 1 cut(s) 174
BsrFI RCCGGY 1 cut(s) 152
BssAI RCCGGY 1 cut(s) 152
BssMI GATC 5 cut(s) 43, 60, 122, 232, 247
BstENI CCTNNNNNAGG 1 cut(s) 256
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 5 cut(s) 46, 63, 125, 235, 250
BstMBI GATC 5 cut(s) 43, 60, 122, 232, 247
BstV1I GCAGC 1 cut(s) 86
Bsu15I ATCGAT 2 cut(s) 63, 235
BsuRI GGCC 1 cut(s) 262
BsuTUI ATCGAT 2 cut(s) 63, 235
BtsCI GGATG 1 cut(s) 10
Cfr10I RCCGGY 1 cut(s) 152
ClaI ATCGAT 2 cut(s) 63, 235
Csp6I GTAC 1 cut(s) 138
CviJI RGCY 6 cut(s) 17, 49, 56, 77, 92, 262
CviKI_1 RGCY 6 cut(s) 17, 49, 56, 77, 92, 262
CviQI GTAC 1 cut(s) 138
DpnI GATC 5 cut(s) 45, 62, 124, 234, 249
DpnII GATC 5 cut(s) 43, 60, 122, 232, 247
Eco147I AGGCCT 1 cut(s) 262
EcoNI CCTNNNNNAGG 1 cut(s) 256
FaiI YATR 2 cut(s) 70, 72
FauNDI CATATG 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 2 cut(s) 50, 135
GluI GCNGC 1 cut(s) 75
HaeIII GGCC 1 cut(s) 262
HapII CCGG 1 cut(s) 153
HpaII CCGG 1 cut(s) 153
HphI GGTGA 1 cut(s) 23
Hpy188III TCNNGA 1 cut(s) 256
HpyAV CCTTC 2 cut(s) 103, 262
HpyCH4V TGCA 1 cut(s) 74
Kzo9I GATC 5 cut(s) 43, 60, 122, 232, 247
LpnPI CCDG 1 cut(s) 166
Lsp1109I GCAGC 1 cut(s) 86
MaeI CTAG 2 cut(s) 50, 135
MaeIII GTNAC 2 cut(s) 112, 148
MalI GATC 5 cut(s) 45, 62, 124, 234, 249
MboI GATC 5 cut(s) 43, 60, 122, 232, 247
MluCI AATT 4 cut(s) 85, 178, 210, 285
MnlI CCTC 5 cut(s) 18, 103, 120, 137, 252
MseI TTAA 2 cut(s) 39, 290
MspI CCGG 1 cut(s) 153
Mva1269I GAATGC 1 cut(s) 130
NdeI CATATG 1 cut(s) 70
NdeII GATC 5 cut(s) 43, 60, 122, 232, 247
NmuCI GTSAC 1 cut(s) 112
PceI AGGCCT 1 cut(s) 262
PctI GAATGC 1 cut(s) 130
PkrI GCNGC 1 cut(s) 76
RsaI GTAC 1 cut(s) 139
RsaNI GTAC 1 cut(s) 138
SaqAI TTAA 2 cut(s) 39, 290
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 5 cut(s) 43, 60, 122, 232, 247
SetI ASST 7 cut(s) 19, 39, 51, 79, 114, 148, 281
SgeI CNNG 9 cut(s) 62, 70, 138, 147, 153, 165, 169, 206, 268
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 4 cut(s) 85, 178, 210, 285
SseBI AGGCCT 1 cut(s) 262
SsiI CCGC 1 cut(s) 165
SspMI CTAG 2 cut(s) 50, 135
StuI AGGCCT 1 cut(s) 262
TaqI TCGA 4 cut(s) 63, 125, 235, 255
TasI AATT 4 cut(s) 85, 178, 210, 285
Tru1I TTAA 2 cut(s) 39, 290
Tru9I TTAA 2 cut(s) 39, 290
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 2 cut(s) 98, 222
XagI CCTNNNNNAGG 1 cut(s) 256
XapI RAATTY 2 cut(s) 85, 285
XspI CTAG 2 cut(s) 50, 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.