Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0017594

Physical Location & Seq

Genomic Coordinates Reverse (-)

59739677 .. 59741206

Gene Structure 1530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG367900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGATGATGGTGAAGCTAAAGAGAGGGAAGCAAAGGTCAAAGATCTGCTAGTAGCCTTGACTGATACATATGCAGCTTCAATGAATTCAGCCTCAAACCAAAAGGAGAAGGTCACCAATGGATCGAGGCATTCTGAATATCAAGGCAAAACCTCAACTCAAGCACCATCTACAAGTACTGCTGCGAAGCCTCCAAAATCTGCAAAGTCTACTTCTAAAGAAATTCATATTTGGGCCCGAAAAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

82

Amino Acids

8.85

Weight (kDa)

9.48

Isoelectric Point (pI)

20.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017594)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05171
rosa_laevigata	RLG00000013247
rosa_multiflora	Rmu_sc0001195.1_g000009 Rmu_sc0001287.1_g000031 Rmu_sc0005322.1_g000016 Rmu_sc0009709.1_g000012
rosa_roxburghii	Rroxscaffold_2G00142030
rosa_samantha	Rh1DG111400 Rh3DG200100 Rh3DG319500 Rh5AG434100 Rh6BG367900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	209
AclWI	GGATC	1 cut(s)	130
AcsI	RAATTY	2 cut(s)	85, 222
AfaI	GTAC	1 cut(s)	178
AgsI	TTSAA	1 cut(s)	81
AluBI	AGCT	2 cut(s)	17, 77
AluI	AGCT	2 cut(s)	17, 77
AlwI	GGATC	1 cut(s)	130
AoxI	GGCC	1 cut(s)	234
ApaI	GGGCCC	1 cut(s)	238
ApeKI	GCWGC	2 cut(s)	74, 182
ApoI	RAATTY	2 cut(s)	85, 222
AspS9I	GGNCC	2 cut(s)	234, 235
AsuHPI	GGTGA	2 cut(s)	23, 106
BaeGI	GKGCMC	1 cut(s)	238
BanII	GRGCYC	1 cut(s)	238
BbvI	GCAGC	2 cut(s)	86, 169
BccI	CCATC	2 cut(s)	2, 175
BfaI	CTAG	1 cut(s)	50
BglII	AGATCT	1 cut(s)	43
BisI	GCNGC	2 cut(s)	75, 183
BlsI	GCNGC	2 cut(s)	76, 184
BmcAI	AGTACT	1 cut(s)	178
BmgT120I	GGNCC	2 cut(s)	234, 235
BmiI	GGNNCC	1 cut(s)	236
BpuEI	CTTGAG	1 cut(s)	144
BseGI	GGATG	1 cut(s)	10
BseSI	GKGCMC	1 cut(s)	238
BseXI	GCAGC	2 cut(s)	86, 169
BshFI	GGCC	1 cut(s)	236
BsmI	GAATGC	1 cut(s)	130
BsnI	GGCC	1 cut(s)	236
Bsp120I	GGGCCC	1 cut(s)	234
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp143I	GATC	2 cut(s)	43, 122
BspANI	GGCC	1 cut(s)	236
BspLI	GGNNCC	1 cut(s)	236
BspPI	GGATC	1 cut(s)	130
BssMI	GATC	2 cut(s)	43, 122
BstEII	GGTNACC	1 cut(s)	112
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	2 cut(s)	46, 125
BstMBI	GATC	2 cut(s)	43, 122
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstPI	GGTNACC	1 cut(s)	112
BstSLI	GKGCMC	1 cut(s)	238
BstV1I	GCAGC	2 cut(s)	86, 169
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BsuRI	GGCC	1 cut(s)	236
BtsCI	GGATG	1 cut(s)	10
Cfr13I	GGNCC	2 cut(s)	234, 235
Csp6I	GTAC	1 cut(s)	177
CviJI	RGCY	7 cut(s)	17, 56, 77, 92, 190, 236, 245
CviKI_1	RGCY	7 cut(s)	17, 56, 77, 92, 190, 236, 245
CviQI	GTAC	1 cut(s)	177
DpnI	GATC	2 cut(s)	45, 124
DpnII	GATC	2 cut(s)	43, 122
Eco24I	GRGCYC	1 cut(s)	238
Eco91I	GGTNACC	1 cut(s)	112
EcoO65I	GGTNACC	1 cut(s)	112
EcoRI	GAATTC	1 cut(s)	85
EcoT38I	GRGCYC	1 cut(s)	238
FaiI	YATR	3 cut(s)	70, 72, 228
FauNDI	CATATG	1 cut(s)	70
FblI	GTMKAC	1 cut(s)	209
Fnu4HI	GCNGC	2 cut(s)	75, 183
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	238
Fsp4HI	GCNGC	2 cut(s)	75, 183
FspBI	CTAG	1 cut(s)	50
GluI	GCNGC	2 cut(s)	75, 183
HaeIII	GGCC	1 cut(s)	236
HphI	GGTGA	2 cut(s)	23, 106
Hpy166II	GTNNAC	1 cut(s)	210
Hpy188I	TCNGA	1 cut(s)	136
Hpy8I	GTNNAC	1 cut(s)	210
HpyAV	CCTTC	1 cut(s)	103
HpyCH4V	TGCA	2 cut(s)	74, 203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
Kzo9I	GATC	2 cut(s)	43, 122
Lsp1109I	GCAGC	2 cut(s)	86, 169
MaeI	CTAG	1 cut(s)	50
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	2 cut(s)	45, 124
MboI	GATC	2 cut(s)	43, 122
MflI	RGATCY	1 cut(s)	43
MhlI	GDGCHC	1 cut(s)	238
MluCI	AATT	2 cut(s)	85, 222
MnlI	CCTC	5 cut(s)	18, 103, 120, 163, 201
Mva1269I	GAATGC	1 cut(s)	130
MwoI	GCNNNNNNNGC	1 cut(s)	242
NdeI	CATATG	1 cut(s)	70
NdeII	GATC	2 cut(s)	43, 122
NlaIV	GGNNCC	1 cut(s)	236
NmuCI	GTSAC	1 cut(s)	112
PctI	GAATGC	1 cut(s)	130
PkrI	GCNGC	2 cut(s)	76, 184
PspEI	GGTNACC	1 cut(s)	112
PspN4I	GGNNCC	1 cut(s)	236
PspOMI	GGGCCC	1 cut(s)	234
PspPI	GGNCC	2 cut(s)	234, 235
PsuI	RGATCY	1 cut(s)	43
RsaI	GTAC	1 cut(s)	178
RsaNI	GTAC	1 cut(s)	177
SatI	GCNGC	2 cut(s)	75, 183
Sau3AI	GATC	2 cut(s)	43, 122
Sau96I	GGNCC	2 cut(s)	234, 235
ScaI	AGTACT	1 cut(s)	178
SduI	GDGCHC	1 cut(s)	238
SetI	ASST	5 cut(s)	19, 39, 79, 114, 155
SgeI	CNNG	6 cut(s)	62, 70, 138, 155, 173, 186
SmlI	CTYRAG	1 cut(s)	159
SmoI	CTYRAG	1 cut(s)	159
Sse9I	AATT	2 cut(s)	85, 222
SspMI	CTAG	1 cut(s)	50
TaqI	TCGA	1 cut(s)	125
TasI	AATT	2 cut(s)	85, 222
TatI	WGTACW	1 cut(s)	176
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	2 cut(s)	74, 182
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	2 cut(s)	98, 215
XapI	RAATTY	2 cut(s)	85, 222
XmiI	GTMKAC	1 cut(s)	209
XspI	CTAG	1 cut(s)	50
ZrmI	AGTACT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.