Rmu_sc0005322.1_g000016

protein dimerization activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005322.1
OG0017594
Physical Location & Seq
Forward (+)
48906 .. 49343
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005322.1_g000016.1.cds

Sequence Viewer

Length: 438 bp
atgaatcacttgcttttggtggctttggtgttagatcctcgatacaaacttcgcaatttcgagagggtatgtagaatacggcctaaacttgattctgcaacaatcaagggaaggtctgctaagctgaaggaattgttggtgaacctgatggacttgtattcatcggcattgggcaccaaaaagtcaaaaccaagtggcaatgaggccgagaaacatgtagcaagtggtaccggcagctctagcacaaagcgttcaagaacccaaatgagtgggaagatggctgccatgcaagctgattggaaacaagagttggaagactcagatcatactgtaatttcacacgaggtggataggtacttgctggatcctattgaagaccctccaaaacatgaagattggaatcttcttgtgtggtggaagcttaatggtgctaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413

Protein Analysis

145

Amino Acids

16.47

Weight (kDa)

9.35

Isoelectric Point (pI)

33.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 227
AccB1I GGYRCC 2 cut(s) 173, 227
AclWI GGATC 3 cut(s) 29, 359, 372
AcuI CTGAAG 1 cut(s) 146
AdeI CACNNNGTG 1 cut(s) 346
AfaI GTAC 2 cut(s) 229, 356
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 2 cut(s) 255, 374
AjuI GAANNNNNNNTTGG 4 cut(s) 119, 151, 293, 325
AluBI AGCT 4 cut(s) 124, 237, 293, 421
AluI AGCT 4 cut(s) 124, 237, 293, 421
AlwI GGATC 3 cut(s) 29, 359, 372
AoxI GGCC 2 cut(s) 80, 204
ApeKI GCWGC 2 cut(s) 234, 281
Asp718I GGTACC 1 cut(s) 227
AsuHPI GGTGA 1 cut(s) 151
BaeGI GKGCMC 1 cut(s) 176
BamHI GGATCC 1 cut(s) 364
BanI GGYRCC 2 cut(s) 173, 227
BauI CACGAG 1 cut(s) 341
BbsI GAAGAC 2 cut(s) 321, 381
BbvI GCAGC 2 cut(s) 246, 268
BccI CCATC 2 cut(s) 142, 271
BceAI ACGGC 1 cut(s) 95
BfaI CTAG 1 cut(s) 240
BisI GCNGC 2 cut(s) 235, 282
BlpI GCTNAGC 1 cut(s) 120
BlsI GCNGC 2 cut(s) 236, 283
BmiI GGNNCC 3 cut(s) 175, 229, 366
BpiI GAAGAC 2 cut(s) 321, 381
Bpu1102I GCTNAGC 1 cut(s) 120
BsaBI GATNNNNATC 1 cut(s) 399
Bse118I RCCGGY 1 cut(s) 230
Bse3DI GCAATG 1 cut(s) 205
Bse8I GATNNNNATC 1 cut(s) 399
BseJI GATNNNNATC 1 cut(s) 399
BseMI GCAATG 1 cut(s) 205
BseMII CTCAG 1 cut(s) 333
BseSI GKGCMC 1 cut(s) 176
BseXI GCAGC 2 cut(s) 246, 268
BshFI GGCC 2 cut(s) 82, 206
BshNI GGYRCC 2 cut(s) 173, 227
BsiSI CCGG 1 cut(s) 231
BsnI GGCC 2 cut(s) 82, 206
Bsp1286I GDGCHC 1 cut(s) 176
Bsp143I GATC 3 cut(s) 34, 322, 364
Bsp1720I GCTNAGC 1 cut(s) 120
BspANI GGCC 2 cut(s) 82, 206
BspCNI CTCAG 1 cut(s) 332
BspLI GGNNCC 3 cut(s) 175, 229, 366
BspPI GGATC 3 cut(s) 29, 359, 372
BspT107I GGYRCC 2 cut(s) 173, 227
BsrDI GCAATG 1 cut(s) 205
BsrFI RCCGGY 1 cut(s) 230
BssAI RCCGGY 1 cut(s) 230
BssMI GATC 3 cut(s) 34, 322, 364
BssSI CACGAG 1 cut(s) 341
Bst2BI CACGAG 1 cut(s) 341
Bst4CI ACNGT 1 cut(s) 331
BstC8I GCNNGC 1 cut(s) 291
BstDEI CTNAG 3 cut(s) 120, 319, 432
BstKTI GATC 3 cut(s) 37, 325, 367
BstMBI GATC 3 cut(s) 34, 322, 364
BstMWI GCNNNNNNNGC 2 cut(s) 240, 290
BstNSI RCATGY 1 cut(s) 218
BstSLI GKGCMC 1 cut(s) 176
BstV1I GCAGC 2 cut(s) 246, 268
BstV2I GAAGAC 2 cut(s) 321, 381
BstX2I RGATCY 2 cut(s) 34, 364
BstXI CCANNNNNNTGG 1 cut(s) 269
BstYI RGATCY 2 cut(s) 34, 364
BsuRI GGCC 2 cut(s) 82, 206
Cac8I GCNNGC 1 cut(s) 291
Cfr10I RCCGGY 1 cut(s) 230
Csp6I GTAC 2 cut(s) 228, 355
CviAII CATG 3 cut(s) 215, 286, 389
CviJI RGCY 8 cut(s) 23, 82, 124, 206, 237, 281, 293, 421
CviKI_1 RGCY 8 cut(s) 23, 82, 124, 206, 237, 281, 293, 421
CviQI GTAC 2 cut(s) 228, 355
DdeI CTNAG 3 cut(s) 120, 319, 432
DpnI GATC 3 cut(s) 36, 324, 366
DpnII GATC 3 cut(s) 34, 322, 364
DraIII CACNNNGTG 1 cut(s) 346
Eco57I CTGAAG 1 cut(s) 146
FaeI CATG 3 cut(s) 218, 289, 392
FaiI YATR 5 cut(s) 70, 216, 287, 327, 390
FatI CATG 3 cut(s) 214, 285, 388
Fnu4HI GCNGC 2 cut(s) 235, 282
Fsp4HI GCNGC 2 cut(s) 235, 282
FspBI CTAG 1 cut(s) 240
GluI GCNGC 2 cut(s) 235, 282
HaeIII GGCC 2 cut(s) 82, 206
HapII CCGG 1 cut(s) 231
Hin1II CATG 3 cut(s) 218, 289, 392
HindIII AAGCTT 1 cut(s) 419
HinfI GANTC 4 cut(s) 4, 92, 317, 400
HpaII CCGG 1 cut(s) 231
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 1 cut(s) 322
Hpy188III TCNNGA 2 cut(s) 61, 255
Hpy8I GTNNAC 1 cut(s) 142
HpyAV CCTTC 2 cut(s) 105, 121
HpyCH4III ACNGT 1 cut(s) 331
HpyCH4V TGCA 2 cut(s) 98, 289
HpyF10VI GCNNNNNNNGC 2 cut(s) 240, 290
HpyF3I CTNAG 3 cut(s) 120, 319, 432
Hsp92II CATG 3 cut(s) 218, 289, 392
KpnI GGTACC 1 cut(s) 231
Kzo9I GATC 3 cut(s) 34, 322, 364
LpnPI CCDG 3 cut(s) 158, 244, 347
Lsp1109I GCAGC 2 cut(s) 246, 268
MaeI CTAG 1 cut(s) 240
MalI GATC 3 cut(s) 36, 324, 366
MboI GATC 3 cut(s) 34, 322, 364
MboII GAAGA 5 cut(s) 286, 326, 386, 395, 404
MflI RGATCY 2 cut(s) 34, 364
MhlI GDGCHC 1 cut(s) 176
MluCI AATT 3 cut(s) 55, 131, 333
MlyI GAGTC 1 cut(s) 311
MmeI TCCRAC 1 cut(s) 291
MnlI CCTC 5 cut(s) 48, 57, 196, 337, 390
MseI TTAA 1 cut(s) 423
MspI CCGG 1 cut(s) 231
MwoI GCNNNNNNNGC 2 cut(s) 240, 290
NdeII GATC 3 cut(s) 34, 322, 364
NlaIII CATG 3 cut(s) 218, 289, 392
NlaIV GGNNCC 3 cut(s) 175, 229, 366
NmeAIII GCCGAG 1 cut(s) 232
NspI RCATGY 1 cut(s) 218
PciI ACATGT 1 cut(s) 214
PfeI GAWTC 3 cut(s) 4, 92, 400
PkrI GCNGC 2 cut(s) 236, 283
PleI GAGTC 1 cut(s) 311
PpsI GAGTC 1 cut(s) 311
PscI ACATGT 1 cut(s) 214
PspN4I GGNNCC 3 cut(s) 175, 229, 366
PsuI RGATCY 2 cut(s) 34, 364
RsaI GTAC 2 cut(s) 229, 356
RsaNI GTAC 2 cut(s) 228, 355
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 2 cut(s) 235, 282
Sau3AI GATC 3 cut(s) 34, 322, 364
SchI GAGTC 1 cut(s) 311
SduI GDGCHC 1 cut(s) 176
SetI ASST 8 cut(s) 116, 126, 147, 239, 295, 348, 356, 423
Sse9I AATT 3 cut(s) 55, 131, 333
SspMI CTAG 1 cut(s) 240
TaaI ACNGT 1 cut(s) 331
TaqI TCGA 2 cut(s) 40, 60
TasI AATT 3 cut(s) 55, 131, 333
TfiI GAWTC 3 cut(s) 4, 92, 400
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TseI GCWGC 2 cut(s) 234, 281
TspDTI ATGAA 3 cut(s) 17, 150, 405
XceI RCATGY 1 cut(s) 218
XspI CTAG 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.