RLG00000013247

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0017594
Physical Location & Seq
Forward (+)
28599145 .. 28601816
2672 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013247

Sequence Viewer

Length: 324 bp
ATGGCCACTTCTGGGACTGAGATGGTGCCGGCGAATCCAGCGACTGAGGGAGGTGCGGCGATTGATAGAGGTGCAGCCACTGGTGGCGGTGCGGCGGCTAGTGGCAGTGCGGCGACTGATGGGGGTGAGGCGGCTTCAAGTCAGGTGGACACAGCAAAGAGAAAGAGGAAGGATTCGAAACAGTCTCGAAGCAAATATCAAGGCAAAACCTCAACTCAGGCACCGTCTACAAGTACTGCTGCGAAGCCTCCAAAATCTGCAAAGTCTACTTCTAAAGGTGTGATTTGTTCAGAAAATCATAAATTAGCTTATGTGTCGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

10.6

Weight (kDa)

9.76

Isoelectric Point (pI)

44.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 25, 220
AccI GTMKAC 2 cut(s) 227, 266
AciI CCGC 6 cut(s) 56, 87, 92, 95, 110, 131
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 2 cut(s) 235, 320
AfiI CCNNNNNNNGG 1 cut(s) 12
AgsI TTSAA 1 cut(s) 138
AluBI AGCT 1 cut(s) 308
AluI AGCT 1 cut(s) 308
Alw26I GTCTC 1 cut(s) 189
AlwNI CAGNNNCTG 2 cut(s) 44, 80
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 74, 239
AsuHPI GGTGA 1 cut(s) 137
AsuII TTCGAA 1 cut(s) 176
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 25, 220
BbvI GCAGC 2 cut(s) 86, 226
BccI CCATC 2 cut(s) 16, 113
BcoDI GTCTC 1 cut(s) 189
BfaI CTAG 2 cut(s) 99, 322
BisI GCNGC 7 cut(s) 57, 75, 93, 96, 111, 132, 240
BlsI GCNGC 7 cut(s) 58, 76, 94, 97, 112, 133, 241
BmcAI AGTACT 1 cut(s) 235
BmiI GGNNCC 2 cut(s) 27, 222
Bpu14I TTCGAA 1 cut(s) 176
Bsc4I CCNNNNNNNGG 1 cut(s) 12
Bse118I RCCGGY 1 cut(s) 28
Bse1I ACTGG 1 cut(s) 85
BseLI CCNNNNNNNGG 1 cut(s) 12
BseMII CTCAG 3 cut(s) 9, 36, 230
BseNI ACTGG 1 cut(s) 85
BseXI GCAGC 2 cut(s) 86, 226
BsgI GTGCAG 1 cut(s) 93
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 2 cut(s) 25, 220
BsiSI CCGG 1 cut(s) 29
BslFI GGGAC 1 cut(s) 28
BslI CCNNNNNNNGG 1 cut(s) 12
BsmAI GTCTC 1 cut(s) 189
BsmFI GGGAC 1 cut(s) 28
BsnI GGCC 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 176
BspACI CCGC 6 cut(s) 56, 87, 92, 95, 110, 131
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 3 cut(s) 10, 37, 229
BspLI GGNNCC 2 cut(s) 27, 222
BspT104I TTCGAA 1 cut(s) 176
BspT107I GGYRCC 2 cut(s) 25, 220
BsrFI RCCGGY 1 cut(s) 28
BsrI ACTGG 1 cut(s) 85
BssAI RCCGGY 1 cut(s) 28
Bst4CI ACNGT 2 cut(s) 183, 225
BstBI TTCGAA 1 cut(s) 176
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 3 cut(s) 18, 45, 216
BstMAI GTCTC 1 cut(s) 189
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstV1I GCAGC 2 cut(s) 86, 226
BsuRI GGCC 1 cut(s) 5
BtsI GCAGTG 1 cut(s) 112
BtsIMutI CAGTG 2 cut(s) 78, 112
Cac8I GCNNGC 1 cut(s) 30
CaiI CAGNNNCTG 2 cut(s) 44, 80
Cfr10I RCCGGY 1 cut(s) 28
Csp6I GTAC 2 cut(s) 234, 319
CspCI CAANNNNNGTGG 2 cut(s) 126, 161
CviJI RGCY 6 cut(s) 5, 77, 98, 134, 247, 308
CviKI_1 RGCY 6 cut(s) 5, 77, 98, 134, 247, 308
CviQI GTAC 2 cut(s) 234, 319
DdeI CTNAG 3 cut(s) 18, 45, 216
EaeI YGGCCR 1 cut(s) 3
FaiI YATR 2 cut(s) 300, 312
FaqI GGGAC 1 cut(s) 28
FblI GTMKAC 2 cut(s) 227, 266
Fnu4HI GCNGC 7 cut(s) 57, 75, 93, 96, 111, 132, 240
Fsp4HI GCNGC 7 cut(s) 57, 75, 93, 96, 111, 132, 240
FspBI CTAG 2 cut(s) 99, 322
GluI GCNGC 7 cut(s) 57, 75, 93, 96, 111, 132, 240
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 29
HinfI GANTC 2 cut(s) 34, 173
HpaII CCGG 1 cut(s) 29
HphI GGTGA 1 cut(s) 137
Hpy166II GTNNAC 3 cut(s) 148, 228, 267
Hpy188I TCNGA 1 cut(s) 292
Hpy188III TCNNGA 1 cut(s) 186
Hpy8I GTNNAC 3 cut(s) 148, 228, 267
HpyAV CCTTC 1 cut(s) 163
HpyCH4III ACNGT 2 cut(s) 183, 225
HpyCH4V TGCA 2 cut(s) 74, 260
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 3 cut(s) 18, 45, 216
KroI GCCGGC 1 cut(s) 28
KroNI GCCGGC 1 cut(s) 30
LpnPI CCDG 5 cut(s) 42, 51, 66, 128, 203
Lsp1109I GCAGC 2 cut(s) 86, 226
MaeI CTAG 2 cut(s) 99, 322
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 302
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 7 cut(s) 40, 44, 62, 121, 159, 220, 258
Mox20I TGGCCA 1 cut(s) 5
MroNI GCCGGC 1 cut(s) 28
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 29
MwoI GCNNNNNNNGC 1 cut(s) 38
NaeI GCCGGC 1 cut(s) 30
NgoMIV GCCGGC 1 cut(s) 28
NlaIV GGNNCC 2 cut(s) 27, 222
NspV TTCGAA 1 cut(s) 176
PdiI GCCGGC 1 cut(s) 30
PfeI GAWTC 2 cut(s) 34, 173
PkrI GCNGC 7 cut(s) 58, 76, 94, 97, 112, 133, 241
PspN4I GGNNCC 2 cut(s) 27, 222
PstNI CAGNNNCTG 2 cut(s) 44, 80
RsaI GTAC 2 cut(s) 235, 320
RsaNI GTAC 2 cut(s) 234, 319
SatI GCNGC 7 cut(s) 57, 75, 93, 96, 111, 132, 240
ScaI AGTACT 1 cut(s) 235
SetI ASST 6 cut(s) 55, 73, 147, 212, 280, 310
SfuI TTCGAA 1 cut(s) 176
Sse9I AATT 1 cut(s) 302
SsiI CCGC 6 cut(s) 56, 87, 92, 95, 110, 131
SspMI CTAG 2 cut(s) 99, 322
TaaI ACNGT 2 cut(s) 183, 225
TaqI TCGA 2 cut(s) 176, 187
TasI AATT 1 cut(s) 302
TatI WGTACW 1 cut(s) 233
TauI GCSGC 5 cut(s) 59, 95, 98, 113, 134
TfiI GAWTC 2 cut(s) 34, 173
TscAI CASTG 2 cut(s) 85, 112
TseI GCWGC 2 cut(s) 74, 239
TspRI CASTG 2 cut(s) 85, 112
XmiI GTMKAC 2 cut(s) 227, 266
XspI CTAG 2 cut(s) 99, 322
ZrmI AGTACT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.