Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0017977

Physical Location & Seq

Genomic Coordinates Forward (+)

4297010 .. 4299087

Gene Structure 2078 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g05200.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGACAATTGAGATCCGTTGTTTTTGTTCTGGAGCGCTGCAAAGAGAAACAGACAAATGTGCTAAAGTTGAAACCCCTAGCGGCGCCCTTGCGGTCCACTTTATCCTCTTAAAGAGAACTGGAAGCCGGAGGTTTGATAGTTTGGGAGGCATAACTTATGATCACCCTGCAACCTTCGTATCTCGCCGAGTAATTGCCATCTATCCCTCTCCTTTCTTATCCAACAGGCCTACCTTTACAAAGACCCTAAACGAGTTTCTTTCTAGCGACTTCCCTGACGTCCCAGATTATGAACACCCCGACATTATTGAAAAAACGTTTAAGGTTGTCGAAGGAGCTGTGCTTGGGTTGCCTATTGAAGTCGTCATTATGGATATCAATGTCCGATTATGTGGCTGTGTAACGAGTCTCGATGAATATCGTATGAGCCTTGATAGGGTCACAAGGGAACTCATGGAATGGTCCAAGCGTCTTGTTGCAACTAAATTATCAATTGATGGTTTGAAGAAAGTGACACTTGACAGTTTGGATCTTGCTGCAAAACAAACATCCTGTGTTATTTGTAGGGAAGATCTTGATCGCATTGCTGTTGTAGAAAAAAGAATCGATCATCCGTTGATGATTACTCGCTTGCCCTGCTCACATATGTATCATGGGGATTGCATTGCTGAGTGGCTGCAGATGAGTCACTTGTGTCCTTACTGCCGCTATCCATTGCCAGTTACGAGAGTGCCTTGTGAGCTTCCAATCTTGGAGGTGAAAGATCAAGGACCAGTGGTTGAAGTTACCAATGAGCAGCCAATTGTTGAAGTTACAAATGAGCCGCCAATTTCAGAAGTCGCTGGTGAGCTACAGATTGCAGAAATGGCAGGTGAAGGGCCAATTATTGAACCTACGGATGAGCAGCCAATTTTGGAAGTAGCCTGTGAGCAACCAGTTTTTAAAGTGGCTGATAAGCCACCAAAACCCTCCAGGCAGGTTGATTGGCGTATGCTTCTCAAAATGTCTGGATGTGGTATCGTAGCTGCTATGCTGCTTTCTAGATTATTGAAAACGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

354

Amino Acids

39.56

Weight (kDa)

5.42

Isoelectric Point (pI)

44.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	184 - 236	2.2e-09	Ring finger domain
zf-rbx1	PF12678	184 - 236	3.2e-09	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017977)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05200
rosa_chinensis	RchiOBHm_Chr6g0255331
rosa_multiflora	Rmu_sc0000903.1_g000028 Rmu_sc0004590.1_g000005 Rmu_sc0011027.1_g000004
rosa_roxburghii	Rroxscaffold_7G00210100 Rroxscaffold_7G00210130 Rroxscaffold_7G00210160
rosa_samantha	Rh6BG068900
rosa_wichuraiana	Rw6G006500 Rw6G006550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	860
AatII	GACGTC	1 cut(s)	282
Acc36I	ACCTGC	2 cut(s)	860, 967
AccB1I	GGYRCC	1 cut(s)	83
AciI	CCGC	4 cut(s)	81, 92, 706, 824
AclI	AACGTT	1 cut(s)	317
AclWI	GGATC	2 cut(s)	7, 537
AcyI	GRCGYC	2 cut(s)	84, 279
AfeI	AGCGCT	1 cut(s)	36
AfiI	CCNNNNNNNGG	1 cut(s)	436
AgsI	TTSAA	8 cut(s)	71, 311, 359, 505, 782, 809, 890, 1051
AjnI	CCWGG	1 cut(s)	971
AluBI	AGCT	4 cut(s)	338, 742, 850, 1025
AluI	AGCT	4 cut(s)	338, 742, 850, 1025
Alw26I	GTCTC	1 cut(s)	413
AlwI	GGATC	2 cut(s)	7, 537
Aor51HI	AGCGCT	1 cut(s)	36
AoxI	GGCC	2 cut(s)	227, 878
ApeKI	GCWGC	7 cut(s)	37, 536, 676, 796, 904, 1025, 1033
AspLEI	GCGC	2 cut(s)	37, 86
AspS9I	GGNCC	4 cut(s)	94, 462, 770, 878
AsuHPI	GGTGA	4 cut(s)	155, 769, 857, 884
AvaII	GGWCC	3 cut(s)	94, 462, 770
BaeI	ACNNNNGTAYC	4 cut(s)	162, 195, 632, 665
BanI	GGYRCC	1 cut(s)	83
BbvI	GCAGC	7 cut(s)	24, 523, 663, 808, 916, 1012, 1020
BccI	CCATC	2 cut(s)	206, 491
BciT130I	CCWGG	1 cut(s)	973
BclI	TGATCA	1 cut(s)	160
BcoDI	GTCTC	1 cut(s)	413
BfaI	CTAG	3 cut(s)	78, 264, 1041
BfmI	CTRYAG	2 cut(s)	677, 851
BfoI	RGCGCY	2 cut(s)	38, 87
BfuAI	ACCTGC	2 cut(s)	860, 967
BglII	AGATCT	1 cut(s)	571
Bme1390I	CCNGG	1 cut(s)	973
Bme18I	GGWCC	3 cut(s)	94, 462, 770
BmgT120I	GGNCC	4 cut(s)	94, 462, 770, 878
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	1 cut(s)	973
BpmI	CTGGAG	2 cut(s)	51, 955
Bsa29I	ATCGAT	1 cut(s)	606
BsaBI	GATNNNNATC	2 cut(s)	417, 576
BsaHI	GRCGYC	2 cut(s)	84, 279
Bsc4I	CCNNNNNNNGG	1 cut(s)	436
Bse1I	ACTGG	4 cut(s)	124, 719, 773, 935
Bse3DI	GCAATG	3 cut(s)	582, 663, 713
Bse8I	GATNNNNATC	2 cut(s)	417, 576
BseBI	CCWGG	1 cut(s)	973
BseCI	ATCGAT	1 cut(s)	606
BseGI	GGATG	4 cut(s)	548, 610, 904, 1016
BseJI	GATNNNNATC	2 cut(s)	417, 576
BseLI	CCNNNNNNNGG	1 cut(s)	436
BseMI	GCAATG	3 cut(s)	582, 663, 713
BseMII	CTCAG	1 cut(s)	660
BseNI	ACTGG	4 cut(s)	124, 719, 773, 935
BseXI	GCAGC	7 cut(s)	24, 523, 663, 808, 916, 1012, 1020
BshFI	GGCC	2 cut(s)	229, 880
BshNI	GGYRCC	1 cut(s)	83
BshVI	ATCGAT	1 cut(s)	606
BsiSI	CCGG	1 cut(s)	127
BslFI	GGGAC	1 cut(s)	266
BslI	CCNNNNNNNGG	1 cut(s)	436
BsmAI	GTCTC	1 cut(s)	413
BsmFI	GGGAC	1 cut(s)	266
BsnI	GGCC	2 cut(s)	229, 880
Bsp143I	GATC	7 cut(s)	12, 160, 529, 571, 577, 607, 763
BspACI	CCGC	4 cut(s)	81, 92, 706, 824
BspANI	GGCC	2 cut(s)	229, 880
BspCNI	CTCAG	1 cut(s)	661
BspDI	ATCGAT	1 cut(s)	606
BspLI	GGNNCC	1 cut(s)	85
BspMAI	CTGCAG	1 cut(s)	681
BspMI	ACCTGC	2 cut(s)	860, 967
BspPI	GGATC	2 cut(s)	7, 537
BspT107I	GGYRCC	1 cut(s)	83
BsrDI	GCAATG	3 cut(s)	582, 663, 713
BsrI	ACTGG	4 cut(s)	124, 719, 773, 935
BssMI	GATC	7 cut(s)	12, 160, 529, 571, 577, 607, 763
BssNI	GRCGYC	2 cut(s)	84, 279
Bst2UI	CCWGG	1 cut(s)	973
Bst4CI	ACNGT	1 cut(s)	524
BstACI	GRCGYC	2 cut(s)	84, 279
BstC8I	GCNNGC	1 cut(s)	632
BstDEI	CTNAG	1 cut(s)	669
BstF5I	GGATG	4 cut(s)	548, 610, 904, 1016
BstH2I	RGCGCY	2 cut(s)	38, 87
BstHHI	GCGC	2 cut(s)	37, 86
BstKTI	GATC	7 cut(s)	15, 163, 532, 574, 580, 610, 766
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	7 cut(s)	12, 160, 529, 571, 577, 607, 763
BstMWI	GCNNNNNNNGC	4 cut(s)	349, 636, 739, 866
BstNI	CCWGG	1 cut(s)	973
BstSCI	CCNGG	1 cut(s)	971
BstSFI	CTRYAG	2 cut(s)	677, 851
BstV1I	GCAGC	7 cut(s)	24, 523, 663, 808, 916, 1012, 1020
BstX2I	RGATCY	3 cut(s)	12, 529, 571
BstYI	RGATCY	3 cut(s)	12, 529, 571
Bsu15I	ATCGAT	1 cut(s)	606
BsuRI	GGCC	2 cut(s)	229, 880
BsuTUI	ATCGAT	1 cut(s)	606
BtsCI	GGATG	4 cut(s)	548, 610, 904, 1016
BtsIMutI	CAGTG	1 cut(s)	780
BveI	ACCTGC	2 cut(s)	860, 967
Cac8I	GCNNGC	1 cut(s)	632
CfoI	GCGC	2 cut(s)	37, 86
Cfr13I	GGNCC	4 cut(s)	94, 462, 770, 878
ClaI	ATCGAT	1 cut(s)	606
CseI	GACGC	1 cut(s)	458
CviAII	CATG	2 cut(s)	454, 653
DdeI	CTNAG	1 cut(s)	669
DinI	GGCGCC	1 cut(s)	85
DpnI	GATC	7 cut(s)	14, 162, 531, 573, 579, 609, 765
DpnII	GATC	7 cut(s)	12, 160, 529, 571, 577, 607, 763
DraI	TTTAAA	1 cut(s)	943
Eco147I	AGGCCT	1 cut(s)	229
Eco32I	GATATC	1 cut(s)	376
Eco47I	GGWCC	3 cut(s)	94, 462, 770
Eco47III	AGCGCT	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	971
EcoRV	GATATC	1 cut(s)	376
EgeI	GGCGCC	1 cut(s)	85
EheI	GGCGCC	1 cut(s)	85
FaeI	CATG	2 cut(s)	457, 656
FalI	AAGNNNNNCTT	2 cut(s)	501, 533
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	2 cut(s)	453, 652
FauNDI	CATATG	1 cut(s)	645
FbaI	TGATCA	1 cut(s)	160
FokI	GGATG	4 cut(s)	535, 597, 911, 1023
FspBI	CTAG	3 cut(s)	78, 264, 1041
GlaI	GCGC	2 cut(s)	36, 85
GsuI	CTGGAG	2 cut(s)	51, 955
HaeII	RGCGCY	2 cut(s)	38, 87
HaeIII	GGCC	2 cut(s)	229, 880
HapII	CCGG	1 cut(s)	127
HgaI	GACGC	1 cut(s)	458
HhaI	GCGC	2 cut(s)	37, 86
Hin1I	GRCGYC	2 cut(s)	84, 279
Hin1II	CATG	2 cut(s)	457, 656
Hin6I	GCGC	2 cut(s)	35, 84
HinP1I	GCGC	2 cut(s)	35, 84
HinfI	GANTC	3 cut(s)	406, 603, 685
HpaII	CCGG	1 cut(s)	127
HphI	GGTGA	4 cut(s)	155, 769, 857, 884
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	2 cut(s)	386, 835
Hpy188III	TCNNGA	5 cut(s)	30, 410, 575, 1008, 1041
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	3 cut(s)	184, 326, 869
HpyCH4III	ACNGT	1 cut(s)	524
HpyCH4IV	ACGT	2 cut(s)	279, 317
HpyCH4V	TGCA	7 cut(s)	40, 170, 479, 539, 663, 679, 860
HpyF10VI	GCNNNNNNNGC	4 cut(s)	349, 636, 739, 866
HpyF3I	CTNAG	1 cut(s)	669
HpySE526I	ACGT	2 cut(s)	279, 317
Hsp92I	GRCGYC	2 cut(s)	84, 279
Hsp92II	CATG	2 cut(s)	457, 656
HspAI	GCGC	2 cut(s)	35, 84
KasI	GGCGCC	1 cut(s)	83
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	7 cut(s)	12, 160, 529, 571, 577, 607, 763
LmnI	GCTCC	2 cut(s)	32, 335
Lsp1109I	GCAGC	7 cut(s)	24, 523, 663, 808, 916, 1012, 1020
MaeI	CTAG	3 cut(s)	78, 264, 1041
MaeII	ACGT	2 cut(s)	279, 317
MaeIII	GTNAC	7 cut(s)	400, 439, 511, 686, 721, 784, 811
MalI	GATC	7 cut(s)	14, 162, 531, 573, 579, 609, 765
MboI	GATC	7 cut(s)	12, 160, 529, 571, 577, 607, 763
MboII	GAAGA	2 cut(s)	517, 581
MfeI	CAATTG	3 cut(s)	6, 492, 801
MflI	RGATCY	3 cut(s)	12, 529, 571
MluCI	AATT	9 cut(s)	6, 192, 485, 492, 801, 828, 882, 909, 1057
Mly113I	GGCGCC	1 cut(s)	84
MlyI	GAGTC	2 cut(s)	415, 694
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	6 cut(s)	116, 123, 140, 217, 748, 979
MseI	TTAA	3 cut(s)	110, 321, 942
MspI	CCGG	1 cut(s)	127
MspR9I	CCNGG	1 cut(s)	973
MunI	CAATTG	3 cut(s)	6, 492, 801
MvaI	CCWGG	1 cut(s)	973
MwoI	GCNNNNNNNGC	4 cut(s)	349, 636, 739, 866
NarI	GGCGCC	1 cut(s)	84
NdeI	CATATG	1 cut(s)	645
NdeII	GATC	7 cut(s)	12, 160, 529, 571, 577, 607, 763
NlaIII	CATG	2 cut(s)	457, 656
NlaIV	GGNNCC	1 cut(s)	85
NmeAIII	GCCGAG	1 cut(s)	212
NmuCI	GTSAC	3 cut(s)	439, 511, 686
PaqCI	CACCTGC	1 cut(s)	860
PceI	AGGCCT	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	603
PleI	GAGTC	2 cut(s)	414, 693
PluTI	GGCGCC	1 cut(s)	87
PpsI	GAGTC	2 cut(s)	414, 693
Psp1406I	AACGTT	1 cut(s)	317
Psp6I	CCWGG	1 cut(s)	971
PspGI	CCWGG	1 cut(s)	971
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	4 cut(s)	94, 462, 770, 878
PstI	CTGCAG	1 cut(s)	681
PsuI	RGATCY	3 cut(s)	12, 529, 571
SaqAI	TTAA	3 cut(s)	110, 321, 942
Sau3AI	GATC	7 cut(s)	12, 160, 529, 571, 577, 607, 763
Sau96I	GGNCC	4 cut(s)	94, 462, 770, 878
SchI	GAGTC	2 cut(s)	415, 694
ScrFI	CCNGG	1 cut(s)	973
SfcI	CTRYAG	2 cut(s)	677, 851
SfoI	GGCGCC	1 cut(s)	85
SinI	GGWCC	3 cut(s)	94, 462, 770
Sse9I	AATT	9 cut(s)	6, 192, 485, 492, 801, 828, 882, 909, 1057
SseBI	AGGCCT	1 cut(s)	229
SsiI	CCGC	4 cut(s)	81, 92, 706, 824
SspDI	GGCGCC	1 cut(s)	83
SspMI	CTAG	3 cut(s)	78, 264, 1041
StuI	AGGCCT	1 cut(s)	229
StyD4I	CCNGG	1 cut(s)	971
TaaI	ACNGT	1 cut(s)	524
TaiI	ACGT	2 cut(s)	282, 320
TaqI	TCGA	3 cut(s)	330, 411, 606
TasI	AATT	9 cut(s)	6, 192, 485, 492, 801, 828, 882, 909, 1057
TauI	GCSGC	3 cut(s)	84, 708, 826
TfiI	GAWTC	1 cut(s)	603
Tru1I	TTAA	3 cut(s)	110, 321, 942
Tru9I	TTAA	3 cut(s)	110, 321, 942
TscAI	CASTG	1 cut(s)	780
TseFI	GTSAC	3 cut(s)	439, 511, 686
TseI	GCWGC	7 cut(s)	37, 536, 676, 796, 904, 1025, 1033
Tsp45I	GTSAC	3 cut(s)	439, 511, 686
TspDTI	ATGAA	2 cut(s)	306, 429
TspGWI	ACGGA	3 cut(s)	5, 603, 911
TspRI	CASTG	1 cut(s)	780
VpaK11BI	GGWCC	3 cut(s)	94, 462, 770
XbaI	TCTAGA	1 cut(s)	1040
XspI	CTAG	3 cut(s)	78, 264, 1041
ZraI	GACGTC	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.