Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0017977

Physical Location & Seq

Genomic Coordinates Forward (+)

10505487 .. 10506572

Gene Structure 1086 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G006550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGTCAATTGAGTTCCGTGCTTTTTGTACGGTAGCATGGCAAAGAGAAACAAATGAATGTGTTAAAGTTGAAATCCCAAGTGGCACCCTTTTGATCAGGTTTATTCTCTGTAAGAGAACTGGAAGCCGCAGGTTTGATACTCTGGGAGGCATAACTTATGATGACCCCCCAACTGTCCTAGTTAACGAAGCACTTGCGATCTATCCCTCTCATGTTTTATCCAACAGGGGTGCTTATACAAAGAGCCTAGGTGAGTTTATTTCCAGCAGCATGCCTGACGTCCCAGAATATGAACACCCCGACATTCTTGAGAAAACATTTAAGGTAGTTAAAGGGGCTGTGCTGGGGTTGCCTATTGATATTGTCGTTGTTGATACCACTGTCCGCTTATGGGGCTGCGCAAGAAGTGTTGAAGAATACCACATGATCCTTGATAGTGTTACTAGGGAACTCATGGATATTTCCAAGCGTATTGCTGCAACTAAATCATCCATTGATGGTTTGGAGGAAGTGAAACTTGAGAGTTTGGATCTTACTGCAAGACAAACAACCTGTGTTATTTGTAAGGAAGGTCTTGATCGCGTTGATGTTGTAGAAGAAAGAATTGATCATCCACTGTTGATTACTCGCTTGCCCTGCTCACATCTGTATCATGGAGATTGCATTGCTGGGTGGCTGCAGTTGAGTCACCTGTGCCCTTTGTGCCGATATCCAATGCCGATTGTGAAAGTAGCATATGAGCTGCCAAGTTTGCAAGTGACAGGTGATGGACCTGTTGGGGAAGTGGCGGGTCAGGGGCCAATTGGGGAAGTGACTGGTGAGCCGCAGACTGTGGAAGTGGCGGGACAGGGACTAATTGGGGAAGTGACTGGTGAGCCGCAGGCTGTGGAAATGGCGGGTGAGGGGCCAATTGTTGAAGTGACCGATGACCAGCCAATTGTGGAAGTAGCCGGTGAGCAACCAATTTTTGAAGTGGCTGATGAGCCATCAAAAAGTTCCAGGGAGGTTGATTGGCCTATGCTGCTCAAGATGTCTGCAGGTGGTATCATAACTGCTATGCTGCTTTATAGATTATTGAGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

361

Amino Acids

39.6

Weight (kDa)

4.75

Isoelectric Point (pI)

36.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	184 - 236	3.6e-09	Ring finger domain
zf-rbx1	PF12678	184 - 236	1.6e-08	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017977)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05200
rosa_chinensis	RchiOBHm_Chr6g0255331
rosa_multiflora	Rmu_sc0000903.1_g000028 Rmu_sc0004590.1_g000005 Rmu_sc0011027.1_g000004
rosa_roxburghii	Rroxscaffold_7G00210100 Rroxscaffold_7G00210130 Rroxscaffold_7G00210160
rosa_samantha	Rh6BG068900
rosa_wichuraiana	Rw6G006500 Rw6G006550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1028
AatII	GACGTC	1 cut(s)	282
Acc16I	TGCGCA	1 cut(s)	400
Acc36I	ACCTGC	2 cut(s)	120, 1028
AccB1I	GGYRCC	1 cut(s)	83
AccII	CGCG	1 cut(s)	582
AciI	CCGC	7 cut(s)	127, 385, 788, 824, 842, 878, 896
AclWI	GGATC	2 cut(s)	421, 537
AcyI	GRCGYC	1 cut(s)	279
AfaI	GTAC	1 cut(s)	28
AfiI	CCNNNNNNNGG	1 cut(s)	391
AgsI	TTSAA	4 cut(s)	71, 413, 917, 971
AjnI	CCWGG	1 cut(s)	998
AluBI	AGCT	1 cut(s)	742
AluI	AGCT	1 cut(s)	742
AlwI	GGATC	2 cut(s)	421, 537
AoxI	GGCC	3 cut(s)	797, 905, 1013
ApeKI	GCWGC	7 cut(s)	267, 396, 476, 676, 742, 1021, 1060
AspA2I	CCTAGG	1 cut(s)	247
AspLEI	GCGC	1 cut(s)	401
AspS9I	GGNCC	3 cut(s)	770, 797, 905
AsuHPI	GGTGA	7 cut(s)	263, 680, 776, 830, 884, 911, 965
AvaII	GGWCC	1 cut(s)	770
AvrII	CCTAGG	1 cut(s)	247
BaeGI	GKGCMC	1 cut(s)	698
BaeI	ACNNNNGTAYC	4 cut(s)	366, 399, 632, 665
BanI	GGYRCC	1 cut(s)	83
BbvI	GCAGC	7 cut(s)	279, 383, 463, 663, 729, 1008, 1047
BccI	CCATC	3 cut(s)	491, 761, 994
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BciT130I	CCWGG	1 cut(s)	1000
BclI	TGATCA	2 cut(s)	93, 607
BfaI	CTAG	3 cut(s)	179, 248, 444
BfmI	CTRYAG	2 cut(s)	677, 1035
BfuAI	ACCTGC	2 cut(s)	120, 1028
BlnI	CCTAGG	1 cut(s)	247
Bme1390I	CCNGG	1 cut(s)	1000
Bme18I	GGWCC	1 cut(s)	770
BmgT120I	GGNCC	3 cut(s)	770, 797, 905
BmiI	GGNNCC	3 cut(s)	85, 798, 906
BmrFI	CCNGG	1 cut(s)	1000
BpuEI	CTTGAG	3 cut(s)	329, 539, 1010
BsaHI	GRCGYC	1 cut(s)	279
BsaJI	CCNNGG	2 cut(s)	247, 999
Bsc4I	CCNNNNNNNGG	1 cut(s)	391
Bse118I	RCCGGY	1 cut(s)	950
Bse1I	ACTGG	3 cut(s)	124, 820, 874
Bse3DI	GCAATG	1 cut(s)	663
BseBI	CCWGG	1 cut(s)	1000
BseDI	CCNNGG	2 cut(s)	247, 999
BseGI	GGATG	2 cut(s)	488, 610
BseLI	CCNNNNNNNGG	1 cut(s)	391
BseMI	GCAATG	1 cut(s)	663
BseNI	ACTGG	3 cut(s)	124, 820, 874
BseSI	GKGCMC	1 cut(s)	698
BseXI	GCAGC	7 cut(s)	279, 383, 463, 663, 729, 1008, 1047
BseYI	CCCAGC	2 cut(s)	343, 668
Bsh1236I	CGCG	1 cut(s)	582
BshFI	GGCC	3 cut(s)	799, 907, 1015
BshNI	GGYRCC	1 cut(s)	83
BsiSI	CCGG	1 cut(s)	951
BslFI	GGGAC	3 cut(s)	266, 858, 864
BslI	CCNNNNNNNGG	1 cut(s)	391
BsmFI	GGGAC	3 cut(s)	266, 858, 864
BsnI	GGCC	3 cut(s)	799, 907, 1015
Bsp1286I	GDGCHC	1 cut(s)	698
Bsp143I	GATC	6 cut(s)	93, 198, 426, 529, 577, 607
BspACI	CCGC	7 cut(s)	127, 385, 788, 824, 842, 878, 896
BspANI	GGCC	3 cut(s)	799, 907, 1015
BspFNI	CGCG	1 cut(s)	582
BspLI	GGNNCC	3 cut(s)	85, 798, 906
BspMAI	CTGCAG	2 cut(s)	681, 1039
BspMI	ACCTGC	2 cut(s)	120, 1028
BspPI	GGATC	2 cut(s)	421, 537
BspT107I	GGYRCC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	663
BsrFI	RCCGGY	1 cut(s)	950
BsrI	ACTGG	3 cut(s)	124, 820, 874
BssAI	RCCGGY	1 cut(s)	950
BssECI	CCNNGG	2 cut(s)	247, 999
BssMI	GATC	6 cut(s)	93, 198, 426, 529, 577, 607
BssNI	GRCGYC	1 cut(s)	279
BssT1I	CCWWGG	1 cut(s)	247
Bst2UI	CCWGG	1 cut(s)	1000
Bst4CI	ACNGT	5 cut(s)	31, 175, 382, 618, 832
BstACI	GRCGYC	1 cut(s)	279
BstC8I	GCNNGC	3 cut(s)	272, 632, 882
BstF5I	GGATG	2 cut(s)	488, 610
BstFNI	CGCG	1 cut(s)	582
BstHHI	GCGC	1 cut(s)	401
BstKTI	GATC	6 cut(s)	96, 201, 429, 532, 580, 610
BstMBI	GATC	6 cut(s)	93, 198, 426, 529, 577, 607
BstMWI	GCNNNNNNNGC	6 cut(s)	349, 393, 636, 702, 751, 1021
BstNI	CCWGG	1 cut(s)	1000
BstNSI	RCATGY	1 cut(s)	274
BstSCI	CCNGG	1 cut(s)	998
BstSFI	CTRYAG	2 cut(s)	677, 1035
BstSLI	GKGCMC	1 cut(s)	698
BstUI	CGCG	1 cut(s)	582
BstV1I	GCAGC	7 cut(s)	279, 383, 463, 663, 729, 1008, 1047
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
BsuRI	GGCC	3 cut(s)	799, 907, 1015
BtsCI	GGATG	2 cut(s)	488, 610
BtsIMutI	CAGTG	2 cut(s)	378, 614
BveI	ACCTGC	2 cut(s)	120, 1028
Cac8I	GCNNGC	3 cut(s)	272, 632, 882
CfoI	GCGC	1 cut(s)	401
Cfr10I	RCCGGY	1 cut(s)	950
Cfr13I	GGNCC	3 cut(s)	770, 797, 905
Csp6I	GTAC	1 cut(s)	27
CviAII	CATG	6 cut(s)	36, 212, 271, 424, 454, 653
CviQI	GTAC	1 cut(s)	27
DpnI	GATC	6 cut(s)	95, 200, 428, 531, 579, 609
DpnII	GATC	6 cut(s)	93, 198, 426, 529, 577, 607
Eco130I	CCWWGG	1 cut(s)	247
Eco32I	GATATC	1 cut(s)	710
Eco47I	GGWCC	1 cut(s)	770
EcoRII	CCWGG	1 cut(s)	998
EcoRV	GATATC	1 cut(s)	710
EcoT14I	CCWWGG	1 cut(s)	247
ErhI	CCWWGG	1 cut(s)	247
FaeI	CATG	6 cut(s)	39, 215, 274, 427, 457, 656
FalI	AAGNNNNNCTT	2 cut(s)	501, 533
FaqI	GGGAC	3 cut(s)	266, 858, 864
FatI	CATG	6 cut(s)	35, 211, 270, 423, 453, 652
FauI	CCCGC	3 cut(s)	781, 835, 889
FauNDI	CATATG	1 cut(s)	736
FbaI	TGATCA	2 cut(s)	93, 607
FokI	GGATG	2 cut(s)	475, 597
FspBI	CTAG	3 cut(s)	179, 248, 444
FspI	TGCGCA	1 cut(s)	400
GlaI	GCGC	1 cut(s)	400
GsaI	CCCAGC	2 cut(s)	347, 672
HaeIII	GGCC	3 cut(s)	799, 907, 1015
HapII	CCGG	1 cut(s)	951
HhaI	GCGC	1 cut(s)	401
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	6 cut(s)	39, 215, 274, 427, 457, 656
Hin6I	GCGC	1 cut(s)	399
HinP1I	GCGC	1 cut(s)	399
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	1 cut(s)	685
HpaI	GTTAAC	1 cut(s)	184
HpaII	CCGG	1 cut(s)	951
HphI	GGTGA	7 cut(s)	263, 680, 776, 830, 884, 911, 965
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188III	TCNNGA	3 cut(s)	308, 575, 1027
Hpy8I	GTNNAC	1 cut(s)	184
HpyAV	CCTTC	1 cut(s)	563
HpyCH4III	ACNGT	5 cut(s)	31, 175, 382, 618, 832
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	6 cut(s)	479, 539, 663, 679, 754, 1037
HpyF10VI	GCNNNNNNNGC	6 cut(s)	349, 393, 636, 702, 751, 1021
HpySE526I	ACGT	1 cut(s)	279
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	6 cut(s)	39, 215, 274, 427, 457, 656
HspAI	GCGC	1 cut(s)	399
Ksp22I	TGATCA	2 cut(s)	93, 607
KspAI	GTTAAC	1 cut(s)	184
Kzo9I	GATC	6 cut(s)	93, 198, 426, 529, 577, 607
Lsp1109I	GCAGC	7 cut(s)	279, 383, 463, 663, 729, 1008, 1047
MaeI	CTAG	3 cut(s)	179, 248, 444
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	6 cut(s)	439, 686, 757, 811, 865, 919
MalI	GATC	6 cut(s)	95, 200, 428, 531, 579, 609
MboI	GATC	6 cut(s)	93, 198, 426, 529, 577, 607
MboII	GAAGA	2 cut(s)	425, 608
MfeI	CAATTG	4 cut(s)	6, 801, 909, 936
MflI	RGATCY	1 cut(s)	529
MhlI	GDGCHC	1 cut(s)	698
MluCI	AATT	8 cut(s)	6, 603, 801, 855, 909, 936, 963, 1081
MlyI	GAGTC	1 cut(s)	694
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	6 cut(s)	140, 217, 499, 895, 997, 1071
MseI	TTAA	4 cut(s)	63, 183, 321, 330
MspI	CCGG	1 cut(s)	951
MspR9I	CCNGG	1 cut(s)	1000
MunI	CAATTG	4 cut(s)	6, 801, 909, 936
MvaI	CCWGG	1 cut(s)	1000
MvnI	CGCG	1 cut(s)	582
MwoI	GCNNNNNNNGC	6 cut(s)	349, 393, 636, 702, 751, 1021
NdeI	CATATG	1 cut(s)	736
NdeII	GATC	6 cut(s)	93, 198, 426, 529, 577, 607
NlaIII	CATG	6 cut(s)	39, 215, 274, 427, 457, 656
NlaIV	GGNNCC	3 cut(s)	85, 798, 906
NmuCI	GTSAC	5 cut(s)	686, 757, 811, 865, 919
NsbI	TGCGCA	1 cut(s)	400
NspI	RCATGY	1 cut(s)	274
PaeI	GCATGC	1 cut(s)	274
PaqCI	CACCTGC	1 cut(s)	1028
PleI	GAGTC	1 cut(s)	693
PpsI	GAGTC	1 cut(s)	693
Psp6I	CCWGG	1 cut(s)	998
PspFI	CCCAGC	2 cut(s)	343, 668
PspGI	CCWGG	1 cut(s)	998
PspN4I	GGNNCC	3 cut(s)	85, 798, 906
PspPI	GGNCC	3 cut(s)	770, 797, 905
PstI	CTGCAG	2 cut(s)	681, 1039
PsuI	RGATCY	1 cut(s)	529
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
SaqAI	TTAA	4 cut(s)	63, 183, 321, 330
Sau3AI	GATC	6 cut(s)	93, 198, 426, 529, 577, 607
Sau96I	GGNCC	3 cut(s)	770, 797, 905
SchI	GAGTC	1 cut(s)	694
ScrFI	CCNGG	1 cut(s)	1000
SduI	GDGCHC	1 cut(s)	698
SfcI	CTRYAG	2 cut(s)	677, 1035
SinI	GGWCC	1 cut(s)	770
SmlI	CTYRAG	3 cut(s)	308, 518, 1025
SmoI	CTYRAG	3 cut(s)	308, 518, 1025
SphI	GCATGC	1 cut(s)	274
Sse9I	AATT	8 cut(s)	6, 603, 801, 855, 909, 936, 963, 1081
SsiI	CCGC	7 cut(s)	127, 385, 788, 824, 842, 878, 896
SspMI	CTAG	3 cut(s)	179, 248, 444
StyD4I	CCNGG	1 cut(s)	998
StyI	CCWWGG	1 cut(s)	247
TaaI	ACNGT	5 cut(s)	31, 175, 382, 618, 832
TaiI	ACGT	1 cut(s)	282
TaqII	GACCGA	1 cut(s)	938
TasI	AATT	8 cut(s)	6, 603, 801, 855, 909, 936, 963, 1081
TauI	GCSGC	3 cut(s)	129, 826, 880
Tru1I	TTAA	4 cut(s)	63, 183, 321, 330
Tru9I	TTAA	4 cut(s)	63, 183, 321, 330
TscAI	CASTG	2 cut(s)	385, 621
TseFI	GTSAC	5 cut(s)	686, 757, 811, 865, 919
TseI	GCWGC	7 cut(s)	267, 396, 476, 676, 742, 1021, 1060
Tsp45I	GTSAC	5 cut(s)	686, 757, 811, 865, 919
TspDTI	ATGAA	2 cut(s)	69, 306
TspGWI	ACGGA	1 cut(s)	5
TspRI	CASTG	2 cut(s)	385, 621
VpaK11BI	GGWCC	1 cut(s)	770
XceI	RCATGY	1 cut(s)	274
XcmI	CCANNNNNNNNNTGG	1 cut(s)	499
XmaJI	CCTAGG	1 cut(s)	247
XspI	CTAG	3 cut(s)	179, 248, 444
ZraI	GACGTC	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.