Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0017977

Physical Location & Seq

Genomic Coordinates Reverse (-)

60353337 .. 60354983

Gene Structure 1647 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00210100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGTCAATTGAGATCCGTGCTTTTTGTACGGGAGCGTGGCAAAAAGAAACAAACGAATGTGTTAAAGTTGAAATCCCAAGTGGCAACCTTTTCATCAAGTTTACTCTCTATAAGAGAACTGGCAGCCGCAGGTTTGACATTCTGGGAGGAACAACTTATGATGACCCCCCAACTGTCCCAGTTAACAAAGCACTTGTGATCGATCCCTCTCATTTTTTATCCAACAGGTGTGCGTATACAAAGAGCCTAACTGAGTTTATTTCCAGCACCATGCCTGACGTCCCAGAAGATGAACACCCTGACATTATTGAGAAAACATTTAAGGTAGTTAAAGGGGCTGTGCTGGGGTTGCCTATTGAGATCGCCATTGTGGATACCACTGTCCGCTTATGGGGCTGCGCAAGAAGTGTTGAAGAATATCACATGATCCTTGATAGTGTTACTAGGGAACTCATGGATATTTCCAAGCGTATTGCTGCAACTAAATTATCCACCGATGGTTTGGAGGAAGTGACACTTGACAGTTTGGATCTTACTGCAAGACAAACAACCTGTGTTATTTGTAAGGAAGGTCTTGATCGCATTGATGTTGTAGAAGAAAGAATTGATCATCCACTGTTGATTACTCGCTTGCCCTGCTCACATCTGTATCATGGAGATTGCATTGCTGGGTGGCTGCAGTTGAGTCACCTGTGTCCTTTGTGCCGATATCCAATGCCGATTGGGAAAGTAGCATGTGAGCTGCCAATTTTGCAAGTGACAGGTGATGGACCTGTTGGGGAAGTGGCGGGACAGGGGCTAATTGGGGAAGTGACTGGTGAGCCGCAGGCTGTGGAAGTGGCAGGTGAGGGGCCAATTGTTGAAGTGACCGATGACCAGCCAATTGTGGAAGTAGCCGGTGAGCAACCAAATTTTGAAGTGGCTGATGAGCCATCAAAAACTTCCAGGAAGGTTGATTGGCCTATGCTGCTCAAGATGTCTGCAGGTGGCATCATAACTGCTATGCTGCTTTATAGATTATTGAGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

343

Amino Acids

37.78

Weight (kDa)

4.88

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	184 - 236	6.3e-09	Ring finger domain
zf-rbx1	PF12678	184 - 236	2.5e-08	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017977)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05200
rosa_chinensis	RchiOBHm_Chr6g0255331
rosa_multiflora	Rmu_sc0000903.1_g000028 Rmu_sc0004590.1_g000005 Rmu_sc0011027.1_g000004
rosa_roxburghii	Rroxscaffold_7G00210100 Rroxscaffold_7G00210130 Rroxscaffold_7G00210160
rosa_samantha	Rh6BG068900
rosa_wichuraiana	Rw6G006500 Rw6G006550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	833, 974
AatII	GACGTC	1 cut(s)	282
Acc16I	TGCGCA	1 cut(s)	400
Acc36I	ACCTGC	3 cut(s)	120, 833, 974
AccI	GTMKAC	1 cut(s)	236
AciI	CCGC	4 cut(s)	127, 385, 788, 824
AclWI	GGATC	4 cut(s)	7, 197, 421, 537
AcsI	RAATTY	1 cut(s)	910
AcyI	GRCGYC	1 cut(s)	279
AfaI	GTAC	1 cut(s)	28
AfiI	CCNNNNNNNGG	1 cut(s)	391
AgsI	TTSAA	4 cut(s)	71, 413, 863, 917
AjnI	CCWGG	1 cut(s)	944
AluBI	AGCT	1 cut(s)	742
AluI	AGCT	1 cut(s)	742
AlwI	GGATC	4 cut(s)	7, 197, 421, 537
AoxI	GGCC	2 cut(s)	851, 959
ApeKI	GCWGC	7 cut(s)	123, 396, 476, 676, 742, 967, 1006
ApoI	RAATTY	1 cut(s)	910
AspLEI	GCGC	1 cut(s)	401
AspS9I	GGNCC	2 cut(s)	770, 851
AsuHPI	GGTGA	5 cut(s)	680, 776, 830, 857, 911
AvaII	GGWCC	1 cut(s)	770
BaeI	ACNNNNGTAYC	4 cut(s)	366, 399, 632, 665
BbvI	GCAGC	7 cut(s)	135, 383, 463, 663, 729, 954, 993
BccI	CCATC	3 cut(s)	491, 761, 940
BciT130I	CCWGG	1 cut(s)	946
BciVI	GTATCC	1 cut(s)	367
BclI	TGATCA	1 cut(s)	607
BfaI	CTAG	1 cut(s)	444
BfmI	CTRYAG	2 cut(s)	677, 981
BfuAI	ACCTGC	3 cut(s)	120, 833, 974
BfuI	GTATCC	1 cut(s)	367
BisI	GCNGC	9 cut(s)	124, 127, 397, 477, 677, 743, 824, 968, 1007
BlsI	GCNGC	9 cut(s)	125, 128, 398, 478, 678, 744, 825, 969, 1008
Bme1390I	CCNGG	1 cut(s)	946
Bme18I	GGWCC	1 cut(s)	770
BmgT120I	GGNCC	2 cut(s)	770, 851
BmiI	GGNNCC	1 cut(s)	852
BmrFI	CCNGG	1 cut(s)	946
BmrI	ACTGGG	1 cut(s)	173
BmsI	GCATC	1 cut(s)	999
BmuI	ACTGGG	1 cut(s)	173
BpuEI	CTTGAG	1 cut(s)	956
Bsa29I	ATCGAT	1 cut(s)	201
BsaHI	GRCGYC	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	1 cut(s)	391
Bse118I	RCCGGY	1 cut(s)	896
Bse1I	ACTGG	3 cut(s)	124, 179, 820
Bse3DI	GCAATG	1 cut(s)	663
BseBI	CCWGG	1 cut(s)	946
BseCI	ATCGAT	1 cut(s)	201
BseGI	GGATG	1 cut(s)	610
BseLI	CCNNNNNNNGG	1 cut(s)	391
BseMI	GCAATG	1 cut(s)	663
BseMII	CTCAG	1 cut(s)	243
BseNI	ACTGG	3 cut(s)	124, 179, 820
BseXI	GCAGC	7 cut(s)	135, 383, 463, 663, 729, 954, 993
BseYI	CCCAGC	2 cut(s)	343, 668
BshFI	GGCC	2 cut(s)	853, 961
BshVI	ATCGAT	1 cut(s)	201
BsiSI	CCGG	1 cut(s)	897
BslFI	GGGAC	3 cut(s)	161, 266, 804
BslI	CCNNNNNNNGG	1 cut(s)	391
BsmFI	GGGAC	3 cut(s)	161, 266, 804
BsnI	GGCC	2 cut(s)	853, 961
Bsp143I	GATC	8 cut(s)	12, 198, 202, 360, 426, 529, 577, 607
BspACI	CCGC	4 cut(s)	127, 385, 788, 824
BspANI	GGCC	2 cut(s)	853, 961
BspCNI	CTCAG	1 cut(s)	244
BspDI	ATCGAT	1 cut(s)	201
BspLI	GGNNCC	1 cut(s)	852
BspMAI	CTGCAG	2 cut(s)	681, 985
BspMI	ACCTGC	3 cut(s)	120, 833, 974
BspPI	GGATC	4 cut(s)	7, 197, 421, 537
BsrDI	GCAATG	1 cut(s)	663
BsrFI	RCCGGY	1 cut(s)	896
BsrI	ACTGG	3 cut(s)	124, 179, 820
BssAI	RCCGGY	1 cut(s)	896
BssMI	GATC	8 cut(s)	12, 198, 202, 360, 426, 529, 577, 607
BssNAI	GTATAC	1 cut(s)	237
BssNI	GRCGYC	1 cut(s)	279
Bst1107I	GTATAC	1 cut(s)	237
Bst2UI	CCWGG	1 cut(s)	946
Bst4CI	ACNGT	4 cut(s)	175, 382, 524, 618
BstACI	GRCGYC	1 cut(s)	279
BstC8I	GCNNGC	2 cut(s)	632, 828
BstDEI	CTNAG	1 cut(s)	252
BstF5I	GGATG	1 cut(s)	610
BstHHI	GCGC	1 cut(s)	401
BstKTI	GATC	8 cut(s)	15, 201, 205, 363, 429, 532, 580, 610
BstMBI	GATC	8 cut(s)	12, 198, 202, 360, 426, 529, 577, 607
BstMWI	GCNNNNNNNGC	5 cut(s)	349, 393, 636, 751, 967
BstNI	CCWGG	1 cut(s)	946
BstNSI	RCATGY	1 cut(s)	738
BstSCI	CCNGG	1 cut(s)	944
BstSFI	CTRYAG	2 cut(s)	677, 981
BstV1I	GCAGC	7 cut(s)	135, 383, 463, 663, 729, 954, 993
BstX2I	RGATCY	2 cut(s)	12, 529
BstYI	RGATCY	2 cut(s)	12, 529
BstZ17I	GTATAC	1 cut(s)	237
Bsu15I	ATCGAT	1 cut(s)	201
BsuI	GTATCC	1 cut(s)	367
BsuRI	GGCC	2 cut(s)	853, 961
BsuTUI	ATCGAT	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	610
BtsIMutI	CAGTG	2 cut(s)	378, 614
BveI	ACCTGC	3 cut(s)	120, 833, 974
Cac8I	GCNNGC	2 cut(s)	632, 828
CfoI	GCGC	1 cut(s)	401
Cfr10I	RCCGGY	1 cut(s)	896
Cfr13I	GGNCC	2 cut(s)	770, 851
ClaI	ATCGAT	1 cut(s)	201
Csp6I	GTAC	1 cut(s)	27
CviAII	CATG	5 cut(s)	271, 424, 454, 653, 735
CviQI	GTAC	1 cut(s)	27
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	8 cut(s)	14, 200, 204, 362, 428, 531, 579, 609
DpnII	GATC	8 cut(s)	12, 198, 202, 360, 426, 529, 577, 607
Eco32I	GATATC	1 cut(s)	710
Eco47I	GGWCC	1 cut(s)	770
EcoRII	CCWGG	1 cut(s)	944
EcoRV	GATATC	1 cut(s)	710
FaeI	CATG	5 cut(s)	274, 427, 457, 656, 738
FalI	AAGNNNNNCTT	2 cut(s)	501, 533
FaqI	GGGAC	3 cut(s)	161, 266, 804
FatI	CATG	5 cut(s)	270, 423, 453, 652, 734
FauI	CCCGC	1 cut(s)	781
FbaI	TGATCA	1 cut(s)	607
FblI	GTMKAC	1 cut(s)	236
Fnu4HI	GCNGC	9 cut(s)	124, 127, 397, 477, 677, 743, 824, 968, 1007
FokI	GGATG	1 cut(s)	597
Fsp4HI	GCNGC	9 cut(s)	124, 127, 397, 477, 677, 743, 824, 968, 1007
FspBI	CTAG	1 cut(s)	444
FspI	TGCGCA	1 cut(s)	400
GlaI	GCGC	1 cut(s)	400
GluI	GCNGC	9 cut(s)	124, 127, 397, 477, 677, 743, 824, 968, 1007
GsaI	CCCAGC	2 cut(s)	347, 672
HaeIII	GGCC	2 cut(s)	853, 961
HapII	CCGG	1 cut(s)	897
HhaI	GCGC	1 cut(s)	401
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	5 cut(s)	274, 427, 457, 656, 738
Hin6I	GCGC	1 cut(s)	399
HinP1I	GCGC	1 cut(s)	399
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	1 cut(s)	685
HpaI	GTTAAC	1 cut(s)	184
HpaII	CCGG	1 cut(s)	897
HphI	GGTGA	5 cut(s)	680, 776, 830, 857, 911
Hpy166II	GTNNAC	3 cut(s)	102, 184, 237
Hpy188III	TCNNGA	2 cut(s)	575, 973
Hpy8I	GTNNAC	3 cut(s)	102, 184, 237
HpyAV	CCTTC	2 cut(s)	563, 943
HpyCH4III	ACNGT	4 cut(s)	175, 382, 524, 618
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	6 cut(s)	479, 539, 663, 679, 754, 983
HpyF10VI	GCNNNNNNNGC	5 cut(s)	349, 393, 636, 751, 967
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	1 cut(s)	279
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	5 cut(s)	274, 427, 457, 656, 738
HspAI	GCGC	1 cut(s)	399
Ksp22I	TGATCA	1 cut(s)	607
KspAI	GTTAAC	1 cut(s)	184
Kzo9I	GATC	8 cut(s)	12, 198, 202, 360, 426, 529, 577, 607
LmnI	GCTCC	1 cut(s)	32
Lsp1109I	GCAGC	7 cut(s)	135, 383, 463, 663, 729, 954, 993
LweI	GCATC	1 cut(s)	999
MaeI	CTAG	1 cut(s)	444
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	6 cut(s)	439, 511, 686, 757, 811, 865
MalI	GATC	8 cut(s)	14, 200, 204, 362, 428, 531, 579, 609
MboI	GATC	8 cut(s)	12, 198, 202, 360, 426, 529, 577, 607
MboII	GAAGA	3 cut(s)	299, 425, 608
MfeI	CAATTG	3 cut(s)	6, 855, 882
MflI	RGATCY	2 cut(s)	12, 529
MluCI	AATT	9 cut(s)	6, 485, 603, 747, 801, 855, 882, 910, 1027
MlyI	GAGTC	1 cut(s)	694
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	5 cut(s)	140, 217, 499, 841, 1017
MseI	TTAA	4 cut(s)	63, 183, 321, 330
MspI	CCGG	1 cut(s)	897
MspR9I	CCNGG	1 cut(s)	946
MunI	CAATTG	3 cut(s)	6, 855, 882
MvaI	CCWGG	1 cut(s)	946
MwoI	GCNNNNNNNGC	5 cut(s)	349, 393, 636, 751, 967
NdeII	GATC	8 cut(s)	12, 198, 202, 360, 426, 529, 577, 607
NlaIII	CATG	5 cut(s)	274, 427, 457, 656, 738
NlaIV	GGNNCC	1 cut(s)	852
NmuCI	GTSAC	5 cut(s)	511, 686, 757, 811, 865
NsbI	TGCGCA	1 cut(s)	400
NspI	RCATGY	1 cut(s)	738
PaqCI	CACCTGC	2 cut(s)	833, 974
PfoI	TCCNGGA	1 cut(s)	944
PkrI	GCNGC	9 cut(s)	125, 128, 398, 478, 678, 744, 825, 969, 1008
PleI	GAGTC	1 cut(s)	693
PpsI	GAGTC	1 cut(s)	693
Psp6I	CCWGG	1 cut(s)	944
PspFI	CCCAGC	2 cut(s)	343, 668
PspGI	CCWGG	1 cut(s)	944
PspN4I	GGNNCC	1 cut(s)	852
PspPI	GGNCC	2 cut(s)	770, 851
PstI	CTGCAG	2 cut(s)	681, 985
PsuI	RGATCY	2 cut(s)	12, 529
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
SaqAI	TTAA	4 cut(s)	63, 183, 321, 330
SatI	GCNGC	9 cut(s)	124, 127, 397, 477, 677, 743, 824, 968, 1007
Sau3AI	GATC	8 cut(s)	12, 198, 202, 360, 426, 529, 577, 607
Sau96I	GGNCC	2 cut(s)	770, 851
SchI	GAGTC	1 cut(s)	694
ScrFI	CCNGG	1 cut(s)	946
SfaNI	GCATC	1 cut(s)	999
SfcI	CTRYAG	2 cut(s)	677, 981
SinI	GGWCC	1 cut(s)	770
SmlI	CTYRAG	1 cut(s)	971
SmoI	CTYRAG	1 cut(s)	971
Sse9I	AATT	9 cut(s)	6, 485, 603, 747, 801, 855, 882, 910, 1027
SsiI	CCGC	4 cut(s)	127, 385, 788, 824
SspMI	CTAG	1 cut(s)	444
StyD4I	CCNGG	1 cut(s)	944
TaaI	ACNGT	4 cut(s)	175, 382, 524, 618
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	1 cut(s)	201
TaqII	GACCGA	1 cut(s)	884
TasI	AATT	9 cut(s)	6, 485, 603, 747, 801, 855, 882, 910, 1027
TauI	GCSGC	2 cut(s)	129, 826
Tru1I	TTAA	4 cut(s)	63, 183, 321, 330
Tru9I	TTAA	4 cut(s)	63, 183, 321, 330
TscAI	CASTG	2 cut(s)	385, 621
TseFI	GTSAC	5 cut(s)	511, 686, 757, 811, 865
TseI	GCWGC	7 cut(s)	123, 396, 476, 676, 742, 967, 1006
Tsp45I	GTSAC	5 cut(s)	511, 686, 757, 811, 865
TspDTI	ATGAA	2 cut(s)	82, 306
TspGWI	ACGGA	1 cut(s)	5
TspRI	CASTG	2 cut(s)	385, 621
VpaK11BI	GGWCC	1 cut(s)	770
XapI	RAATTY	1 cut(s)	910
XceI	RCATGY	1 cut(s)	738
XcmI	CCANNNNNNNNNTGG	1 cut(s)	499
XmiI	GTMKAC	1 cut(s)	236
XspI	CTAG	1 cut(s)	444
ZraI	GACGTC	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.