Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0017977

Physical Location & Seq

Genomic Coordinates Reverse (-)

60386027 .. 60387730

Gene Structure 1704 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00210130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGTCAATTGAGTTCCGTGCTTTTTGTACGGGAGCGTGGCAAAGAGAAACAAATGAATGTGTTAAAGTTGAAATCCCAAGTGGCAACCTTTTGATCAGGTTTATTCTGTGTAAGAGAACTGGAAGCCGCAGGTTTGATACTCTGGGAGGCATAACTTATGATGACCCCCCAACTGTCCTAGTTAACAAAGTACTTGTGATCCATCCCTCTCATGTTTTATCCTACAGAGGTGCTTATACAAGGAGCCTAGGTGAGTTTATTTCCAGCAGCATGCCTGACGTCCCAGAATATGAACACCCCGACATTCTTGAGAAAACATTTAAGGTAGTTAAAGGGGCTGTGCTGGGGTTGCTTATTGATATCGTCGTTGTGGATACCACTGTCCGCTTATGGGGCTGCGCAAGAAGTGTTGAAGAATATCACATGATCCTTGATAGTGTTACTAGGGAACTCATGGACATTTCGAAGCGTATTGCTGCAACTAAATTATCCATTGATGGTTTGGAGAAAGTGACACTTGACAGTTTGGATCTTACTGCAAGACAAACAACCTGTGTTATTTGTAAGGAAGGTCTTGATCGCATTGATGTTGTAGAAGAAAGAATTGATCATCCACTGTTGATTACTCGCTTGCCCTGCTCACATCTGTATCATGGAGATTGCATTGCTGGGTGGCTGCAGTTGAGTCACCTGTGTCCTTTGTGCCGATATCGAATGCCAATTGTGAAAGTAGCATGTGAGCTGCCAATTTTGCAAGTGACAGGTGATGGACCTGTTGGGGAAGTGGCGGGACAGGGGCTAATTGGGGAAGTGACTGGTGAGCTGCAGGCTGTGGAAGTGGCAGGTGAGGGGCCAATTGTTGAAGTGATCGATGACCAGCCAATTGTGGAAGTAGCCGGTGAGCAACCCATTTTTGAAGTGGCTGATGAGCCATCAAAAACTTCCAGGGAGGTTGATTGGCCTGTGCTGCTCAAGATGTCTGCAGGTGGTATCATAACTGCTATGCTGCTTTATAGATTATTGAGGAAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

344

Amino Acids

38.07

Weight (kDa)

5.15

Isoelectric Point (pI)

36.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	184 - 236	6.3e-09	Ring finger domain
zf-rbx1	PF12678	184 - 236	2.5e-08	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017977)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05200
rosa_chinensis	RchiOBHm_Chr6g0255331
rosa_multiflora	Rmu_sc0000903.1_g000028 Rmu_sc0004590.1_g000005 Rmu_sc0011027.1_g000004
rosa_roxburghii	Rroxscaffold_7G00210100 Rroxscaffold_7G00210130 Rroxscaffold_7G00210160
rosa_samantha	Rh6BG068900
rosa_wichuraiana	Rw6G006500 Rw6G006550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	833, 974
AatII	GACGTC	1 cut(s)	282
Acc16I	TGCGCA	1 cut(s)	400
Acc36I	ACCTGC	3 cut(s)	120, 833, 974
AciI	CCGC	3 cut(s)	127, 385, 788
AclWI	GGATC	3 cut(s)	193, 421, 537
AcyI	GRCGYC	1 cut(s)	279
AfaI	GTAC	2 cut(s)	28, 192
AfiI	CCNNNNNNNGG	1 cut(s)	391
AgsI	TTSAA	4 cut(s)	71, 413, 863, 917
AjnI	CCWGG	1 cut(s)	944
AluBI	AGCT	2 cut(s)	742, 823
AluI	AGCT	2 cut(s)	742, 823
AlwI	GGATC	3 cut(s)	193, 421, 537
AoxI	GGCC	2 cut(s)	851, 959
ApeKI	GCWGC	8 cut(s)	267, 396, 476, 676, 742, 823, 967, 1006
AspA2I	CCTAGG	1 cut(s)	247
AspLEI	GCGC	1 cut(s)	401
AspS9I	GGNCC	2 cut(s)	770, 851
AsuHPI	GGTGA	6 cut(s)	263, 680, 776, 830, 857, 911
AsuII	TTCGAA	1 cut(s)	464
AvaII	GGWCC	1 cut(s)	770
AvrII	CCTAGG	1 cut(s)	247
BaeI	ACNNNNGTAYC	4 cut(s)	366, 399, 632, 665
BbvI	GCAGC	8 cut(s)	279, 383, 463, 663, 729, 810, 954, 993
BccI	CCATC	4 cut(s)	210, 491, 761, 940
BciT130I	CCWGG	1 cut(s)	946
BciVI	GTATCC	1 cut(s)	367
BclI	TGATCA	2 cut(s)	93, 607
BfaI	CTAG	3 cut(s)	179, 248, 444
BfmI	CTRYAG	4 cut(s)	223, 677, 824, 981
BfuAI	ACCTGC	3 cut(s)	120, 833, 974
BfuI	GTATCC	1 cut(s)	367
BisI	GCNGC	9 cut(s)	127, 268, 397, 477, 677, 743, 824, 968, 1007
BlnI	CCTAGG	1 cut(s)	247
BlsI	GCNGC	9 cut(s)	128, 269, 398, 478, 678, 744, 825, 969, 1008
BmcAI	AGTACT	1 cut(s)	192
Bme1390I	CCNGG	1 cut(s)	946
Bme18I	GGWCC	1 cut(s)	770
BmgT120I	GGNCC	2 cut(s)	770, 851
BmiI	GGNNCC	2 cut(s)	245, 852
BmrFI	CCNGG	1 cut(s)	946
Bpu14I	TTCGAA	1 cut(s)	464
BpuEI	CTTGAG	2 cut(s)	329, 956
Bsa29I	ATCGAT	1 cut(s)	870
BsaHI	GRCGYC	1 cut(s)	279
BsaJI	CCNNGG	2 cut(s)	247, 945
BsaXI	ACNNNNNCTCC	2 cut(s)	235, 265
Bsc4I	CCNNNNNNNGG	1 cut(s)	391
Bse118I	RCCGGY	1 cut(s)	896
Bse1I	ACTGG	2 cut(s)	124, 820
Bse3DI	GCAATG	1 cut(s)	663
BseBI	CCWGG	1 cut(s)	946
BseCI	ATCGAT	1 cut(s)	870
BseDI	CCNNGG	2 cut(s)	247, 945
BseGI	GGATG	2 cut(s)	202, 610
BseLI	CCNNNNNNNGG	1 cut(s)	391
BseMI	GCAATG	1 cut(s)	663
BseNI	ACTGG	2 cut(s)	124, 820
BseXI	GCAGC	8 cut(s)	279, 383, 463, 663, 729, 810, 954, 993
BseYI	CCCAGC	2 cut(s)	343, 668
BshFI	GGCC	2 cut(s)	853, 961
BshVI	ATCGAT	1 cut(s)	870
BsiSI	CCGG	1 cut(s)	897
BslFI	GGGAC	2 cut(s)	266, 804
BslI	CCNNNNNNNGG	1 cut(s)	391
BsmFI	GGGAC	2 cut(s)	266, 804
BsmI	GAATGC	1 cut(s)	720
BsnI	GGCC	2 cut(s)	853, 961
Bsp119I	TTCGAA	1 cut(s)	464
Bsp143I	GATC	7 cut(s)	93, 198, 426, 529, 577, 607, 867
BspACI	CCGC	3 cut(s)	127, 385, 788
BspANI	GGCC	2 cut(s)	853, 961
BspDI	ATCGAT	1 cut(s)	870
BspLI	GGNNCC	2 cut(s)	245, 852
BspMAI	CTGCAG	3 cut(s)	681, 828, 985
BspMI	ACCTGC	3 cut(s)	120, 833, 974
BspPI	GGATC	3 cut(s)	193, 421, 537
BspT104I	TTCGAA	1 cut(s)	464
BsrDI	GCAATG	1 cut(s)	663
BsrFI	RCCGGY	1 cut(s)	896
BsrI	ACTGG	2 cut(s)	124, 820
BssAI	RCCGGY	1 cut(s)	896
BssECI	CCNNGG	2 cut(s)	247, 945
BssMI	GATC	7 cut(s)	93, 198, 426, 529, 577, 607, 867
BssNI	GRCGYC	1 cut(s)	279
BssT1I	CCWWGG	1 cut(s)	247
Bst2UI	CCWGG	1 cut(s)	946
Bst4CI	ACNGT	4 cut(s)	175, 382, 524, 618
BstACI	GRCGYC	1 cut(s)	279
BstBI	TTCGAA	1 cut(s)	464
BstC8I	GCNNGC	3 cut(s)	272, 632, 828
BstF5I	GGATG	2 cut(s)	202, 610
BstHHI	GCGC	1 cut(s)	401
BstKTI	GATC	7 cut(s)	96, 201, 429, 532, 580, 610, 870
BstMBI	GATC	7 cut(s)	93, 198, 426, 529, 577, 607, 867
BstMWI	GCNNNNNNNGC	5 cut(s)	349, 393, 636, 751, 967
BstNI	CCWGG	1 cut(s)	946
BstNSI	RCATGY	2 cut(s)	274, 738
BstSCI	CCNGG	1 cut(s)	944
BstSFI	CTRYAG	4 cut(s)	223, 677, 824, 981
BstV1I	GCAGC	8 cut(s)	279, 383, 463, 663, 729, 810, 954, 993
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
Bsu15I	ATCGAT	1 cut(s)	870
BsuI	GTATCC	1 cut(s)	367
BsuRI	GGCC	2 cut(s)	853, 961
BsuTUI	ATCGAT	1 cut(s)	870
BtsCI	GGATG	2 cut(s)	202, 610
BtsIMutI	CAGTG	2 cut(s)	378, 614
BveI	ACCTGC	3 cut(s)	120, 833, 974
Cac8I	GCNNGC	3 cut(s)	272, 632, 828
CfoI	GCGC	1 cut(s)	401
Cfr10I	RCCGGY	1 cut(s)	896
Cfr13I	GGNCC	2 cut(s)	770, 851
ClaI	ATCGAT	1 cut(s)	870
Csp6I	GTAC	2 cut(s)	27, 191
CviAII	CATG	6 cut(s)	212, 271, 424, 454, 653, 735
CviQI	GTAC	2 cut(s)	27, 191
DpnI	GATC	7 cut(s)	95, 200, 428, 531, 579, 609, 869
DpnII	GATC	7 cut(s)	93, 198, 426, 529, 577, 607, 867
Eco130I	CCWWGG	1 cut(s)	247
Eco32I	GATATC	2 cut(s)	361, 710
Eco47I	GGWCC	1 cut(s)	770
EcoRII	CCWGG	1 cut(s)	944
EcoRV	GATATC	2 cut(s)	361, 710
EcoT14I	CCWWGG	1 cut(s)	247
ErhI	CCWWGG	1 cut(s)	247
FaeI	CATG	6 cut(s)	215, 274, 427, 457, 656, 738
FalI	AAGNNNNNCTT	2 cut(s)	501, 533
FaqI	GGGAC	2 cut(s)	266, 804
FatI	CATG	6 cut(s)	211, 270, 423, 453, 652, 734
FauI	CCCGC	1 cut(s)	781
FbaI	TGATCA	2 cut(s)	93, 607
Fnu4HI	GCNGC	9 cut(s)	127, 268, 397, 477, 677, 743, 824, 968, 1007
FokI	GGATG	2 cut(s)	189, 597
Fsp4HI	GCNGC	9 cut(s)	127, 268, 397, 477, 677, 743, 824, 968, 1007
FspBI	CTAG	3 cut(s)	179, 248, 444
FspI	TGCGCA	1 cut(s)	400
GlaI	GCGC	1 cut(s)	400
GluI	GCNGC	9 cut(s)	127, 268, 397, 477, 677, 743, 824, 968, 1007
GsaI	CCCAGC	2 cut(s)	347, 672
HaeIII	GGCC	2 cut(s)	853, 961
HapII	CCGG	1 cut(s)	897
HhaI	GCGC	1 cut(s)	401
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	6 cut(s)	215, 274, 427, 457, 656, 738
Hin6I	GCGC	1 cut(s)	399
HinP1I	GCGC	1 cut(s)	399
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	1 cut(s)	685
HpaI	GTTAAC	1 cut(s)	184
HpaII	CCGG	1 cut(s)	897
HphI	GGTGA	6 cut(s)	263, 680, 776, 830, 857, 911
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188III	TCNNGA	3 cut(s)	308, 575, 973
Hpy8I	GTNNAC	1 cut(s)	184
Hpy99I	CGWCG	1 cut(s)	368
HpyAV	CCTTC	1 cut(s)	563
HpyCH4III	ACNGT	4 cut(s)	175, 382, 524, 618
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	7 cut(s)	479, 539, 663, 679, 754, 826, 983
HpyF10VI	GCNNNNNNNGC	5 cut(s)	349, 393, 636, 751, 967
HpySE526I	ACGT	1 cut(s)	279
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	6 cut(s)	215, 274, 427, 457, 656, 738
HspAI	GCGC	1 cut(s)	399
Ksp22I	TGATCA	2 cut(s)	93, 607
KspAI	GTTAAC	1 cut(s)	184
Kzo9I	GATC	7 cut(s)	93, 198, 426, 529, 577, 607, 867
LmnI	GCTCC	2 cut(s)	32, 243
Lsp1109I	GCAGC	8 cut(s)	279, 383, 463, 663, 729, 810, 954, 993
MaeI	CTAG	3 cut(s)	179, 248, 444
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	5 cut(s)	439, 511, 686, 757, 811
MalI	GATC	7 cut(s)	95, 200, 428, 531, 579, 609, 869
MboI	GATC	7 cut(s)	93, 198, 426, 529, 577, 607, 867
MboII	GAAGA	2 cut(s)	425, 608
MfeI	CAATTG	4 cut(s)	6, 720, 855, 882
MflI	RGATCY	1 cut(s)	529
MluCI	AATT	8 cut(s)	6, 485, 603, 720, 747, 801, 855, 882
MlyI	GAGTC	1 cut(s)	694
MnlI	CCTC	6 cut(s)	140, 217, 221, 841, 943, 1017
MseI	TTAA	4 cut(s)	63, 183, 321, 330
MspI	CCGG	1 cut(s)	897
MspR9I	CCNGG	1 cut(s)	946
MunI	CAATTG	4 cut(s)	6, 720, 855, 882
Mva1269I	GAATGC	1 cut(s)	720
MvaI	CCWGG	1 cut(s)	946
MwoI	GCNNNNNNNGC	5 cut(s)	349, 393, 636, 751, 967
NdeII	GATC	7 cut(s)	93, 198, 426, 529, 577, 607, 867
NlaIII	CATG	6 cut(s)	215, 274, 427, 457, 656, 738
NlaIV	GGNNCC	2 cut(s)	245, 852
NmuCI	GTSAC	4 cut(s)	511, 686, 757, 811
NsbI	TGCGCA	1 cut(s)	400
NspI	RCATGY	2 cut(s)	274, 738
NspV	TTCGAA	1 cut(s)	464
PaeI	GCATGC	1 cut(s)	274
PaqCI	CACCTGC	2 cut(s)	833, 974
PctI	GAATGC	1 cut(s)	720
PkrI	GCNGC	9 cut(s)	128, 269, 398, 478, 678, 744, 825, 969, 1008
PleI	GAGTC	1 cut(s)	693
PpsI	GAGTC	1 cut(s)	693
Psp6I	CCWGG	1 cut(s)	944
PspFI	CCCAGC	2 cut(s)	343, 668
PspGI	CCWGG	1 cut(s)	944
PspN4I	GGNNCC	2 cut(s)	245, 852
PspPI	GGNCC	2 cut(s)	770, 851
PstI	CTGCAG	3 cut(s)	681, 828, 985
PsuI	RGATCY	1 cut(s)	529
RsaI	GTAC	2 cut(s)	28, 192
RsaNI	GTAC	2 cut(s)	27, 191
SaqAI	TTAA	4 cut(s)	63, 183, 321, 330
SatI	GCNGC	9 cut(s)	127, 268, 397, 477, 677, 743, 824, 968, 1007
Sau3AI	GATC	7 cut(s)	93, 198, 426, 529, 577, 607, 867
Sau96I	GGNCC	2 cut(s)	770, 851
ScaI	AGTACT	1 cut(s)	192
SchI	GAGTC	1 cut(s)	694
ScrFI	CCNGG	1 cut(s)	946
SfcI	CTRYAG	4 cut(s)	223, 677, 824, 981
SfuI	TTCGAA	1 cut(s)	464
SinI	GGWCC	1 cut(s)	770
SmlI	CTYRAG	2 cut(s)	308, 971
SmoI	CTYRAG	2 cut(s)	308, 971
SphI	GCATGC	1 cut(s)	274
Sse9I	AATT	8 cut(s)	6, 485, 603, 720, 747, 801, 855, 882
SsiI	CCGC	3 cut(s)	127, 385, 788
SspMI	CTAG	3 cut(s)	179, 248, 444
StyD4I	CCNGG	1 cut(s)	944
StyI	CCWWGG	1 cut(s)	247
TaaI	ACNGT	4 cut(s)	175, 382, 524, 618
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	3 cut(s)	464, 712, 870
TasI	AATT	8 cut(s)	6, 485, 603, 720, 747, 801, 855, 882
TatI	WGTACW	1 cut(s)	190
TauI	GCSGC	1 cut(s)	129
Tru1I	TTAA	4 cut(s)	63, 183, 321, 330
Tru9I	TTAA	4 cut(s)	63, 183, 321, 330
TscAI	CASTG	2 cut(s)	385, 621
TseFI	GTSAC	4 cut(s)	511, 686, 757, 811
TseI	GCWGC	8 cut(s)	267, 396, 476, 676, 742, 823, 967, 1006
Tsp45I	GTSAC	4 cut(s)	511, 686, 757, 811
TspDTI	ATGAA	2 cut(s)	69, 306
TspGWI	ACGGA	1 cut(s)	5
TspRI	CASTG	2 cut(s)	385, 621
VpaK11BI	GGWCC	1 cut(s)	770
XceI	RCATGY	2 cut(s)	274, 738
XcmI	CCANNNNNNNNNTGG	2 cut(s)	499, 916
XmaJI	CCTAGG	1 cut(s)	247
XspI	CTAG	3 cut(s)	179, 248, 444
ZraI	GACGTC	1 cut(s)	280
ZrmI	AGTACT	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.