Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0017977

Physical Location & Seq

Genomic Coordinates Reverse (-)

60418131 .. 60419949

Gene Structure 1819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00210160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGATATCAGTTCTTCAAGCATGCCAACCGAGATCCATTTTTTTCATACTAAGTCGTGGCAAAGAGAACCAAATGTATCTGTTGAAGTTGAAATCCCAAGTGGCACTCTTGTGATAAGATTTATCCTCTATAAGCGAATTGGAAGCCGCCGGTTTGATACTCTGGGAGACATAACTTATGATGACCCGGCTGTCCTAGTTAACAAAGGAGTTGTGATCGATCCCTCTGATTTCTTATCCGATAGAGGTATGTATACGGAGATGATAATTGAGTTAATTTCTAGCAGCATGCCTGATGTCCCAGAAGATGAACACCCTGACATTATTGGAAAAACATTTGAGGCAGTTGAAGGGGCTGTTCTCGGGCTGCCTATTGATATTGTCATTGTGGATACCACAATCCGCTTATTGGGCTGTGCAAGAACTGTTGAAGAATATCACTTGATTGTTGGCAGGTTTACGATGGACTTCATGCATATTTCCAAGCGTATTGCTGCAACTAAATTATCCATTGACGGCTTGGAGAGAGTGGTACTCGATAGTTTGGATCTTAGTGTTAGACAAACGCCTTGTATTATTTGTAGGGAAGATCTTGATCACATTGATGTTGTAGAAGGAAGAATTGTTCATCTAGTGATGATTACTCGCCTGCCCTGCTCTCATCTTTATCATGGAGATTGCATTGTTGGGTGGCTGCTGATGAGCCACTTGTGTCCTTTGTGCCGATATCCAATTCCAGTTGTGAAAGTGCCGTGTGAGTTGCCCATTTTGGAAGTGACGGCTGAGGGGCCAATTTTGGAAGGGGCGGGTGAGGGGCCAATTGGGGAAGTGACTGATGAACAGCCAATTGTGGAAGTGGCTGGTGAGCGGCCAATTGTGGAAGTGGCTCGTGAGCAGCAGACCATGGAAGGGGCGGGTGAGCTGCAGATTGTTGAAGTGACAAATGAGCTGCCAGTAGTGGAAGTGGCCAGTGAGGGGCCAATTGTTGAAGTGACTGATGAGCAGCCAATTGTGGAAGTGGCCGGTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

343

Amino Acids

37.91

Weight (kDa)

4.48

Isoelectric Point (pI)

38.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	191 - 242	1.8e-08	Ring finger domain
zf-rbx1	PF12678	191 - 242	1.1e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017977)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05200
rosa_chinensis	RchiOBHm_Chr6g0255331
rosa_multiflora	Rmu_sc0000903.1_g000028 Rmu_sc0004590.1_g000005 Rmu_sc0011027.1_g000004
rosa_roxburghii	Rroxscaffold_7G00210100 Rroxscaffold_7G00210130 Rroxscaffold_7G00210160
rosa_samantha	Rh6BG068900
rosa_wichuraiana	Rw6G006500 Rw6G006550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	191
Acc36I	ACCTGC	1 cut(s)	444
AccBSI	CCGCTC	1 cut(s)	868
AccI	GTMKAC	1 cut(s)	254
AciI	CCGC	5 cut(s)	148, 403, 806, 868, 914
AclWI	GGATC	3 cut(s)	28, 215, 555
AcoI	YGGCCR	3 cut(s)	869, 966, 1020
AfaI	GTAC	1 cut(s)	534
AfiI	CCNNNNNNNGG	3 cut(s)	409, 909, 975
AgsI	TTSAA	7 cut(s)	18, 86, 92, 350, 431, 935, 989
AleI	CACNNNNGTG	1 cut(s)	110
AloI	GAACNNNNNNTCC	2 cut(s)	609, 641
AluBI	AGCT	2 cut(s)	922, 949
AluI	AGCT	2 cut(s)	922, 949
Alw26I	GTCTC	1 cut(s)	162
AlwI	GGATC	3 cut(s)	28, 215, 555
Ama87I	CYCGRG	1 cut(s)	362
AoxI	GGCC	6 cut(s)	788, 815, 869, 966, 977, 1020
ApeKI	GCWGC	8 cut(s)	285, 367, 494, 694, 895, 922, 949, 1003
AspS9I	GGNCC	3 cut(s)	788, 815, 977
AsuC2I	CCSGG	1 cut(s)	188
AsuHPI	GGTGA	3 cut(s)	821, 875, 929
AvaI	CYCGRG	1 cut(s)	362
BalI	TGGCCA	1 cut(s)	968
BauI	CACGAG	1 cut(s)	888
BbvCI	CCTCAGC	1 cut(s)	783
BbvI	GCAGC	8 cut(s)	297, 354, 481, 681, 907, 909, 936, 1015
BccI	CCATC	1 cut(s)	457
BceAI	ACGGC	3 cut(s)	532, 736, 795
BciVI	GTATCC	1 cut(s)	385
BclI	TGATCA	1 cut(s)	595
BcnI	CCSGG	1 cut(s)	188
BcoDI	GTCTC	1 cut(s)	162
BfaI	CTAG	3 cut(s)	197, 282, 632
BfmI	CTRYAG	1 cut(s)	923
BfuAI	ACCTGC	1 cut(s)	444
BfuI	GTATCC	1 cut(s)	385
BglII	AGATCT	1 cut(s)	589
Bme1390I	CCNGG	1 cut(s)	188
BmeT110I	CYCGRG	1 cut(s)	362
BmgT120I	GGNCC	3 cut(s)	788, 815, 977
BmiI	GGNNCC	3 cut(s)	789, 816, 978
BmrFI	CCNGG	1 cut(s)	188
BplI	GAGNNNNNCTC	2 cut(s)	519, 551
Bpu10I	CCTNAGC	1 cut(s)	783
BpuMI	CCSGG	1 cut(s)	188
Bsa29I	ATCGAT	1 cut(s)	219
BsaBI	GATNNNNATC	1 cut(s)	594
BsaJI	CCNNGG	1 cut(s)	903
Bsc4I	CCNNNNNNNGG	3 cut(s)	409, 909, 975
Bse118I	RCCGGY	2 cut(s)	150, 1022
Bse1I	ACTGG	3 cut(s)	737, 953, 969
Bse8I	GATNNNNATC	1 cut(s)	594
BseCI	ATCGAT	1 cut(s)	219
BseDI	CCNNGG	1 cut(s)	903
BseJI	GATNNNNATC	1 cut(s)	594
BseLI	CCNNNNNNNGG	3 cut(s)	409, 909, 975
BseMII	CTCAG	1 cut(s)	774
BseNI	ACTGG	3 cut(s)	737, 953, 969
BseXI	GCAGC	8 cut(s)	297, 354, 481, 681, 907, 909, 936, 1015
BshFI	GGCC	6 cut(s)	790, 817, 871, 968, 979, 1022
BshVI	ATCGAT	1 cut(s)	219
BsiHKCI	CYCGRG	1 cut(s)	362
BsiSI	CCGG	3 cut(s)	151, 188, 1023
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	3 cut(s)	409, 909, 975
BsmAI	GTCTC	1 cut(s)	162
BsmFI	GGGAC	1 cut(s)	284
BsnI	GGCC	6 cut(s)	790, 817, 871, 968, 979, 1022
BsoBI	CYCGRG	1 cut(s)	362
Bsp143I	GATC	6 cut(s)	33, 216, 220, 547, 589, 595
Bsp19I	CCATGG	1 cut(s)	903
BspACI	CCGC	5 cut(s)	148, 403, 806, 868, 914
BspANI	GGCC	6 cut(s)	790, 817, 871, 968, 979, 1022
BspCNI	CTCAG	1 cut(s)	775
BspDI	ATCGAT	1 cut(s)	219
BspLI	GGNNCC	3 cut(s)	789, 816, 978
BspMAI	CTGCAG	1 cut(s)	927
BspMI	ACCTGC	1 cut(s)	444
BspPI	GGATC	3 cut(s)	28, 215, 555
BsrBI	CCGCTC	1 cut(s)	868
BsrFI	RCCGGY	2 cut(s)	150, 1022
BsrI	ACTGG	3 cut(s)	737, 953, 969
BssAI	RCCGGY	2 cut(s)	150, 1022
BssECI	CCNNGG	1 cut(s)	903
BssMI	GATC	6 cut(s)	33, 216, 220, 547, 589, 595
BssNAI	GTATAC	1 cut(s)	255
BssSI	CACGAG	1 cut(s)	888
BssT1I	CCWWGG	1 cut(s)	903
Bst1107I	GTATAC	1 cut(s)	255
Bst2BI	CACGAG	1 cut(s)	888
Bst4CI	ACNGT	1 cut(s)	427
BstC8I	GCNNGC	3 cut(s)	23, 290, 650
BstDEI	CTNAG	3 cut(s)	51, 551, 783
BstDSI	CCRYGG	1 cut(s)	903
BstKTI	GATC	6 cut(s)	36, 219, 223, 550, 592, 598
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	6 cut(s)	33, 216, 220, 547, 589, 595
BstMWI	GCNNNNNNNGC	2 cut(s)	411, 654
BstNSI	RCATGY	2 cut(s)	25, 292
BstSCI	CCNGG	1 cut(s)	186
BstSFI	CTRYAG	1 cut(s)	923
BstV1I	GCAGC	8 cut(s)	297, 354, 481, 681, 907, 909, 936, 1015
BstX2I	RGATCY	3 cut(s)	33, 547, 589
BstYI	RGATCY	3 cut(s)	33, 547, 589
BstZ17I	GTATAC	1 cut(s)	255
Bsu15I	ATCGAT	1 cut(s)	219
BsuI	GTATCC	1 cut(s)	385
BsuRI	GGCC	6 cut(s)	790, 817, 871, 968, 979, 1022
BsuTUI	ATCGAT	1 cut(s)	219
BtgI	CCRYGG	1 cut(s)	903
BtsIMutI	CAGTG	1 cut(s)	976
BveI	ACCTGC	1 cut(s)	444
Cac8I	GCNNGC	3 cut(s)	23, 290, 650
Cfr10I	RCCGGY	2 cut(s)	150, 1022
Cfr13I	GGNCC	3 cut(s)	788, 815, 977
ClaI	ATCGAT	1 cut(s)	219
Csp6I	GTAC	1 cut(s)	533
CviAII	CATG	5 cut(s)	22, 289, 472, 671, 904
CviQI	GTAC	1 cut(s)	533
DdeI	CTNAG	3 cut(s)	51, 551, 783
DpnI	GATC	6 cut(s)	35, 218, 222, 549, 591, 597
DpnII	GATC	6 cut(s)	33, 216, 220, 547, 589, 595
DrdI	GACNNNNNNGTC	1 cut(s)	191
DseDI	GACNNNNNNGTC	1 cut(s)	191
EaeI	YGGCCR	3 cut(s)	869, 966, 1020
Eco130I	CCWWGG	1 cut(s)	903
Eco32I	GATATC	2 cut(s)	7, 728
Eco88I	CYCGRG	1 cut(s)	362
EcoRV	GATATC	2 cut(s)	7, 728
EcoT14I	CCWWGG	1 cut(s)	903
EcoT22I	ATGCAT	1 cut(s)	477
ErhI	CCWWGG	1 cut(s)	903
FaeI	CATG	5 cut(s)	25, 292, 475, 674, 907
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	5 cut(s)	21, 288, 471, 670, 903
FauI	CCCGC	2 cut(s)	799, 907
FbaI	TGATCA	1 cut(s)	595
FblI	GTMKAC	1 cut(s)	254
FspBI	CTAG	3 cut(s)	197, 282, 632
HaeIII	GGCC	6 cut(s)	790, 817, 871, 968, 979, 1022
HapII	CCGG	3 cut(s)	151, 188, 1023
Hin1II	CATG	5 cut(s)	25, 292, 475, 674, 907
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HpaI	GTTAAC	1 cut(s)	202
HpaII	CCGG	3 cut(s)	151, 188, 1023
HphI	GGTGA	3 cut(s)	821, 875, 929
Hpy166II	GTNNAC	3 cut(s)	202, 255, 459
Hpy188I	TCNGA	2 cut(s)	229, 241
Hpy188III	TCNNGA	2 cut(s)	593, 890
Hpy8I	GTNNAC	3 cut(s)	202, 255, 459
HpyAV	CCTTC	4 cut(s)	344, 608, 794, 902
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4V	TGCA	5 cut(s)	419, 475, 497, 681, 925
HpyF10VI	GCNNNNNNNGC	2 cut(s)	411, 654
HpyF3I	CTNAG	3 cut(s)	51, 551, 783
Hsp92II	CATG	5 cut(s)	25, 292, 475, 674, 907
Ksp22I	TGATCA	1 cut(s)	595
KspAI	GTTAAC	1 cut(s)	202
Kzo9I	GATC	6 cut(s)	33, 216, 220, 547, 589, 595
Lsp1109I	GCAGC	8 cut(s)	297, 354, 481, 681, 907, 909, 936, 1015
MaeI	CTAG	3 cut(s)	197, 282, 632
MaeIII	GTNAC	4 cut(s)	775, 829, 937, 991
MalI	GATC	6 cut(s)	35, 218, 222, 549, 591, 597
MbiI	CCGCTC	1 cut(s)	868
MboI	GATC	6 cut(s)	33, 216, 220, 547, 589, 595
MboII	GAAGA	5 cut(s)	6, 317, 443, 599, 630
MfeI	CAATTG	5 cut(s)	819, 846, 873, 981, 1008
MflI	RGATCY	3 cut(s)	33, 547, 589
MlsI	TGGCCA	1 cut(s)	968
MluNI	TGGCCA	1 cut(s)	968
MnlI	CCTC	7 cut(s)	137, 235, 239, 334, 778, 805, 967
Mox20I	TGGCCA	1 cut(s)	968
Mph1103I	ATGCAT	1 cut(s)	477
MscI	TGGCCA	1 cut(s)	968
MseI	TTAA	2 cut(s)	201, 275
MslI	CAYNNNNRTG	2 cut(s)	110, 603
Msp20I	TGGCCA	1 cut(s)	968
MspI	CCGG	3 cut(s)	151, 188, 1023
MspR9I	CCNGG	1 cut(s)	188
MunI	CAATTG	5 cut(s)	819, 846, 873, 981, 1008
MwoI	GCNNNNNNNGC	2 cut(s)	411, 654
NciI	CCSGG	1 cut(s)	188
NcoI	CCATGG	1 cut(s)	903
NdeII	GATC	6 cut(s)	33, 216, 220, 547, 589, 595
NlaIII	CATG	5 cut(s)	25, 292, 475, 674, 907
NlaIV	GGNNCC	3 cut(s)	789, 816, 978
NmuCI	GTSAC	4 cut(s)	775, 829, 937, 991
NsiI	ATGCAT	1 cut(s)	477
NspI	RCATGY	2 cut(s)	25, 292
OliI	CACNNNNGTG	1 cut(s)	110
PaeI	GCATGC	2 cut(s)	25, 292
PspN4I	GGNNCC	3 cut(s)	789, 816, 978
PspPI	GGNCC	3 cut(s)	788, 815, 977
PstI	CTGCAG	1 cut(s)	927
PsuI	RGATCY	3 cut(s)	33, 547, 589
RsaI	GTAC	1 cut(s)	534
RsaNI	GTAC	1 cut(s)	533
RseI	CAYNNNNRTG	2 cut(s)	110, 603
SaqAI	TTAA	2 cut(s)	201, 275
Sau3AI	GATC	6 cut(s)	33, 216, 220, 547, 589, 595
Sau96I	GGNCC	3 cut(s)	788, 815, 977
ScrFI	CCNGG	1 cut(s)	188
SetI	ASST	4 cut(s)	250, 458, 924, 951
SfcI	CTRYAG	1 cut(s)	923
SmiMI	CAYNNNNRTG	2 cut(s)	110, 603
SphI	GCATGC	2 cut(s)	25, 292
SsiI	CCGC	5 cut(s)	148, 403, 806, 868, 914
SspMI	CTAG	3 cut(s)	197, 282, 632
StyD4I	CCNGG	1 cut(s)	186
StyI	CCWWGG	1 cut(s)	903
TaaI	ACNGT	1 cut(s)	427
TaqI	TCGA	2 cut(s)	219, 537
TauI	GCSGC	2 cut(s)	150, 871
Tru1I	TTAA	2 cut(s)	201, 275
Tru9I	TTAA	2 cut(s)	201, 275
TscAI	CASTG	1 cut(s)	976
TseFI	GTSAC	4 cut(s)	775, 829, 937, 991
TseI	GCWGC	8 cut(s)	285, 367, 494, 694, 895, 922, 949, 1003
Tsp45I	GTSAC	4 cut(s)	775, 829, 937, 991
TspDTI	ATGAA	5 cut(s)	35, 324, 460, 617, 852
TspGWI	ACGGA	1 cut(s)	272
TspRI	CASTG	1 cut(s)	976
XceI	RCATGY	2 cut(s)	25, 292
XcmI	CCANNNNNNNNNTGG	1 cut(s)	517
XmiI	GTMKAC	1 cut(s)	254
XspI	CTAG	3 cut(s)	197, 282, 632
Zsp2I	ATGCAT	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.