Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0017977

Physical Location & Seq

Genomic Coordinates Forward (+)

10548916 .. 10550560

Gene Structure 1645 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG068900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGTCAATTGAGTTCCGTGCTTTTTGTACGGGAGCGTGGCAAAAAGAAACAAACGAATGTGTTAAAGTTGAAATCCCAAGTGGCGACCTTTTCATCAAGTTTACTCTCTATAAGAGAACTGGAAGCCGCAGGTTTGACACTCTGGGAGGAACAACTTATGATGACCCCCCAACTGTCCCAGTTAACAAAGCACTTGTGATCGATCCCTCTCATTTTTTATCCAACAGGTGTGCGTATACAAAGAGCCTACTTGAGTTTATTTCCAGCAGCATGCCTGACGTCCCAGAAGATGAACACCCCGACATTATTGAGAAAACATTTAAGGTAGTTAAAGGGGCTGTGCTGGGGTTGCCTATTGAGATCGCCATTGTGGATACCACTGTCCGCTTATGGGGCTGCGCAAGAAGTGTTGAAGAATATCACATGATCCTTGATAGTGTTACTAGGGAACTCATGGATATTTCCAAGCGTATTGCTGCAACTAAATTATCCATTGATGGTTTGGAGGAAGTGACACTTGACAGTTTGGATCTTACTGCAAGACAAACAACCTGTGTTATTTGTAAGGAAGGTCTTGATCGCGTTAATGTTGTAGAAGAAAGAATTGATCATCCACTGTTGATTACTCGCTTGCCCTGCTCACACCTGTATCATGGAGATTGCATTGCTGGGTGGCTGCAGTTGAGTCACCTGTGTCCTTTGTGCCGATATCCAATGCCGATTGTGAAAGTAGCATATGAGCTGCCAAGTTTGCAAGTGACAGGTGATGGACCTGTTGGGGAAGTGGCGGGTCAGGGGCCAATTGGGGAAGTGACTGGTGAGCCGCAGACTGTGGAAGTGGCGGGACAGGGACTAATTGGGGAAGTGACTGGTGAGCCGCAGGCAATGGCGGGTGAGGGGCTAATTGGGGAAGTGACTGGTGAGCCGCAGGCTGTGGAAATGGCGGGTGAGGGGCCAATTGTTGAAGTGACCGATGACCAGCCAATTGTGGAAGTAGCCGATGAGCAACCAATTTTTGAAGTGGCTGATGAGCCATCAAAAACTTCCAGGGAGGTTGATTGGCCTATGCTGCTCAAGATGTCTGCAGGTGGTATCATAACTGCTATGCTGCTTTATAGATTATTGAGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

377

Amino Acids

41.25

Weight (kDa)

4.61

Isoelectric Point (pI)

38.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	184 - 236	7.7e-09	Ring finger domain
zf-rbx1	PF12678	184 - 236	1.2e-08	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017977)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05200
rosa_chinensis	RchiOBHm_Chr6g0255331
rosa_multiflora	Rmu_sc0000903.1_g000028 Rmu_sc0004590.1_g000005 Rmu_sc0011027.1_g000004
rosa_roxburghii	Rroxscaffold_7G00210100 Rroxscaffold_7G00210130 Rroxscaffold_7G00210160
rosa_samantha	Rh6BG068900
rosa_wichuraiana	Rw6G006500 Rw6G006550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1076
AatII	GACGTC	1 cut(s)	282
Acc16I	TGCGCA	1 cut(s)	400
Acc36I	ACCTGC	2 cut(s)	120, 1076
AccI	GTMKAC	1 cut(s)	236
AccII	CGCG	1 cut(s)	582
AciI	CCGC	9 cut(s)	127, 385, 788, 824, 842, 878, 890, 926, 944
AclWI	GGATC	3 cut(s)	197, 421, 537
AcyI	GRCGYC	1 cut(s)	279
AfaI	GTAC	1 cut(s)	28
AfiI	CCNNNNNNNGG	1 cut(s)	391
AgsI	TTSAA	4 cut(s)	71, 413, 965, 1019
AjnI	CCWGG	1 cut(s)	1046
AluBI	AGCT	1 cut(s)	742
AluI	AGCT	1 cut(s)	742
AlwI	GGATC	3 cut(s)	197, 421, 537
AoxI	GGCC	3 cut(s)	797, 953, 1061
ApeKI	GCWGC	7 cut(s)	267, 396, 476, 676, 742, 1069, 1108
AspLEI	GCGC	1 cut(s)	401
AspS9I	GGNCC	3 cut(s)	770, 797, 953
AsuHPI	GGTGA	7 cut(s)	680, 776, 830, 884, 905, 932, 959
AvaII	GGWCC	1 cut(s)	770
BaeI	ACNNNNGTAYC	4 cut(s)	366, 399, 632, 665
BbvI	GCAGC	7 cut(s)	279, 383, 463, 663, 729, 1056, 1095
BccI	CCATC	3 cut(s)	491, 761, 1042
BciT130I	CCWGG	1 cut(s)	1048
BciVI	GTATCC	1 cut(s)	367
BclI	TGATCA	1 cut(s)	607
BfaI	CTAG	1 cut(s)	444
BfmI	CTRYAG	2 cut(s)	677, 1083
BfuAI	ACCTGC	2 cut(s)	120, 1076
BfuI	GTATCC	1 cut(s)	367
Bme1390I	CCNGG	1 cut(s)	1048
Bme18I	GGWCC	1 cut(s)	770
BmgT120I	GGNCC	3 cut(s)	770, 797, 953
BmiI	GGNNCC	2 cut(s)	798, 954
BmrFI	CCNGG	1 cut(s)	1048
BmrI	ACTGGG	1 cut(s)	173
BmuI	ACTGGG	1 cut(s)	173
BpuEI	CTTGAG	2 cut(s)	272, 1058
Bsa29I	ATCGAT	1 cut(s)	201
BsaHI	GRCGYC	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	1047
Bsc4I	CCNNNNNNNGG	1 cut(s)	391
Bse1I	ACTGG	5 cut(s)	124, 179, 820, 874, 922
Bse3DI	GCAATG	2 cut(s)	663, 891
BseBI	CCWGG	1 cut(s)	1048
BseCI	ATCGAT	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	1047
BseGI	GGATG	1 cut(s)	610
BseLI	CCNNNNNNNGG	1 cut(s)	391
BseMI	GCAATG	2 cut(s)	663, 891
BseNI	ACTGG	5 cut(s)	124, 179, 820, 874, 922
BseXI	GCAGC	7 cut(s)	279, 383, 463, 663, 729, 1056, 1095
BseYI	CCCAGC	2 cut(s)	343, 668
Bsh1236I	CGCG	1 cut(s)	582
BshFI	GGCC	3 cut(s)	799, 955, 1063
BshVI	ATCGAT	1 cut(s)	201
BslFI	GGGAC	4 cut(s)	161, 266, 858, 864
BslI	CCNNNNNNNGG	1 cut(s)	391
BsmFI	GGGAC	4 cut(s)	161, 266, 858, 864
BsnI	GGCC	3 cut(s)	799, 955, 1063
Bsp143I	GATC	7 cut(s)	198, 202, 360, 426, 529, 577, 607
BspACI	CCGC	9 cut(s)	127, 385, 788, 824, 842, 878, 890, 926, 944
BspANI	GGCC	3 cut(s)	799, 955, 1063
BspDI	ATCGAT	1 cut(s)	201
BspFNI	CGCG	1 cut(s)	582
BspLI	GGNNCC	2 cut(s)	798, 954
BspMAI	CTGCAG	2 cut(s)	681, 1087
BspMI	ACCTGC	2 cut(s)	120, 1076
BspPI	GGATC	3 cut(s)	197, 421, 537
BsrDI	GCAATG	2 cut(s)	663, 891
BsrI	ACTGG	5 cut(s)	124, 179, 820, 874, 922
BssECI	CCNNGG	1 cut(s)	1047
BssMI	GATC	7 cut(s)	198, 202, 360, 426, 529, 577, 607
BssNAI	GTATAC	1 cut(s)	237
BssNI	GRCGYC	1 cut(s)	279
Bst1107I	GTATAC	1 cut(s)	237
Bst2UI	CCWGG	1 cut(s)	1048
Bst4CI	ACNGT	5 cut(s)	175, 382, 524, 618, 832
BstACI	GRCGYC	1 cut(s)	279
BstC8I	GCNNGC	4 cut(s)	272, 632, 882, 930
BstF5I	GGATG	1 cut(s)	610
BstFNI	CGCG	1 cut(s)	582
BstHHI	GCGC	1 cut(s)	401
BstKTI	GATC	7 cut(s)	201, 205, 363, 429, 532, 580, 610
BstMBI	GATC	7 cut(s)	198, 202, 360, 426, 529, 577, 607
BstMWI	GCNNNNNNNGC	5 cut(s)	349, 393, 636, 751, 1069
BstNI	CCWGG	1 cut(s)	1048
BstNSI	RCATGY	1 cut(s)	274
BstSCI	CCNGG	1 cut(s)	1046
BstSFI	CTRYAG	2 cut(s)	677, 1083
BstUI	CGCG	1 cut(s)	582
BstV1I	GCAGC	7 cut(s)	279, 383, 463, 663, 729, 1056, 1095
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
BstZ17I	GTATAC	1 cut(s)	237
Bsu15I	ATCGAT	1 cut(s)	201
BsuI	GTATCC	1 cut(s)	367
BsuRI	GGCC	3 cut(s)	799, 955, 1063
BsuTUI	ATCGAT	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	610
BtsIMutI	CAGTG	2 cut(s)	378, 614
BveI	ACCTGC	2 cut(s)	120, 1076
Cac8I	GCNNGC	4 cut(s)	272, 632, 882, 930
CfoI	GCGC	1 cut(s)	401
Cfr13I	GGNCC	3 cut(s)	770, 797, 953
ClaI	ATCGAT	1 cut(s)	201
Csp6I	GTAC	1 cut(s)	27
CviAII	CATG	4 cut(s)	271, 424, 454, 653
CviQI	GTAC	1 cut(s)	27
DpnI	GATC	7 cut(s)	200, 204, 362, 428, 531, 579, 609
DpnII	GATC	7 cut(s)	198, 202, 360, 426, 529, 577, 607
Eco32I	GATATC	1 cut(s)	710
Eco47I	GGWCC	1 cut(s)	770
EcoRII	CCWGG	1 cut(s)	1046
EcoRV	GATATC	1 cut(s)	710
FaeI	CATG	4 cut(s)	274, 427, 457, 656
FalI	AAGNNNNNCTT	2 cut(s)	501, 533
FaqI	GGGAC	4 cut(s)	161, 266, 858, 864
FatI	CATG	4 cut(s)	270, 423, 453, 652
FauI	CCCGC	4 cut(s)	781, 835, 883, 937
FauNDI	CATATG	1 cut(s)	736
FbaI	TGATCA	1 cut(s)	607
FblI	GTMKAC	1 cut(s)	236
FokI	GGATG	1 cut(s)	597
FspBI	CTAG	1 cut(s)	444
FspI	TGCGCA	1 cut(s)	400
GlaI	GCGC	1 cut(s)	400
GsaI	CCCAGC	2 cut(s)	347, 672
HaeIII	GGCC	3 cut(s)	799, 955, 1063
HhaI	GCGC	1 cut(s)	401
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	4 cut(s)	274, 427, 457, 656
Hin6I	GCGC	1 cut(s)	399
HinP1I	GCGC	1 cut(s)	399
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	1 cut(s)	685
HpaI	GTTAAC	1 cut(s)	184
HphI	GGTGA	7 cut(s)	680, 776, 830, 884, 905, 932, 959
Hpy166II	GTNNAC	3 cut(s)	102, 184, 237
Hpy188III	TCNNGA	2 cut(s)	575, 1075
Hpy8I	GTNNAC	3 cut(s)	102, 184, 237
HpyAV	CCTTC	1 cut(s)	563
HpyCH4III	ACNGT	5 cut(s)	175, 382, 524, 618, 832
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	6 cut(s)	479, 539, 663, 679, 754, 1085
HpyF10VI	GCNNNNNNNGC	5 cut(s)	349, 393, 636, 751, 1069
HpySE526I	ACGT	1 cut(s)	279
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	4 cut(s)	274, 427, 457, 656
HspAI	GCGC	1 cut(s)	399
Ksp22I	TGATCA	1 cut(s)	607
KspAI	GTTAAC	1 cut(s)	184
Kzo9I	GATC	7 cut(s)	198, 202, 360, 426, 529, 577, 607
LmnI	GCTCC	1 cut(s)	32
Lsp1109I	GCAGC	7 cut(s)	279, 383, 463, 663, 729, 1056, 1095
MaeI	CTAG	1 cut(s)	444
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	8 cut(s)	439, 511, 686, 757, 811, 865, 913, 967
MalI	GATC	7 cut(s)	200, 204, 362, 428, 531, 579, 609
MboI	GATC	7 cut(s)	198, 202, 360, 426, 529, 577, 607
MboII	GAAGA	3 cut(s)	299, 425, 608
MfeI	CAATTG	4 cut(s)	6, 801, 957, 984
MflI	RGATCY	1 cut(s)	529
MlyI	GAGTC	1 cut(s)	694
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	7 cut(s)	140, 217, 499, 889, 943, 1045, 1119
MseI	TTAA	5 cut(s)	63, 183, 321, 330, 585
MspR9I	CCNGG	1 cut(s)	1048
MunI	CAATTG	4 cut(s)	6, 801, 957, 984
MvaI	CCWGG	1 cut(s)	1048
MvnI	CGCG	1 cut(s)	582
MwoI	GCNNNNNNNGC	5 cut(s)	349, 393, 636, 751, 1069
NdeI	CATATG	1 cut(s)	736
NdeII	GATC	7 cut(s)	198, 202, 360, 426, 529, 577, 607
NlaIII	CATG	4 cut(s)	274, 427, 457, 656
NlaIV	GGNNCC	2 cut(s)	798, 954
NmuCI	GTSAC	7 cut(s)	511, 686, 757, 811, 865, 913, 967
NsbI	TGCGCA	1 cut(s)	400
NspI	RCATGY	1 cut(s)	274
PaeI	GCATGC	1 cut(s)	274
PaqCI	CACCTGC	1 cut(s)	1076
PleI	GAGTC	1 cut(s)	693
PpsI	GAGTC	1 cut(s)	693
Psp6I	CCWGG	1 cut(s)	1046
PspFI	CCCAGC	2 cut(s)	343, 668
PspGI	CCWGG	1 cut(s)	1046
PspN4I	GGNNCC	2 cut(s)	798, 954
PspPI	GGNCC	3 cut(s)	770, 797, 953
PstI	CTGCAG	2 cut(s)	681, 1087
PsuI	RGATCY	1 cut(s)	529
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
SaqAI	TTAA	5 cut(s)	63, 183, 321, 330, 585
Sau3AI	GATC	7 cut(s)	198, 202, 360, 426, 529, 577, 607
Sau96I	GGNCC	3 cut(s)	770, 797, 953
SchI	GAGTC	1 cut(s)	694
ScrFI	CCNGG	1 cut(s)	1048
SfcI	CTRYAG	2 cut(s)	677, 1083
SinI	GGWCC	1 cut(s)	770
SmlI	CTYRAG	2 cut(s)	251, 1073
SmoI	CTYRAG	2 cut(s)	251, 1073
SphI	GCATGC	1 cut(s)	274
SsiI	CCGC	9 cut(s)	127, 385, 788, 824, 842, 878, 890, 926, 944
SspMI	CTAG	1 cut(s)	444
StyD4I	CCNGG	1 cut(s)	1046
TaaI	ACNGT	5 cut(s)	175, 382, 524, 618, 832
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	1 cut(s)	201
TaqII	GACCGA	1 cut(s)	986
TauI	GCSGC	4 cut(s)	129, 826, 880, 928
Tru1I	TTAA	5 cut(s)	63, 183, 321, 330, 585
Tru9I	TTAA	5 cut(s)	63, 183, 321, 330, 585
TscAI	CASTG	2 cut(s)	385, 621
TseFI	GTSAC	7 cut(s)	511, 686, 757, 811, 865, 913, 967
TseI	GCWGC	7 cut(s)	267, 396, 476, 676, 742, 1069, 1108
Tsp45I	GTSAC	7 cut(s)	511, 686, 757, 811, 865, 913, 967
TspDTI	ATGAA	2 cut(s)	82, 306
TspGWI	ACGGA	1 cut(s)	5
TspRI	CASTG	2 cut(s)	385, 621
VpaK11BI	GGWCC	1 cut(s)	770
XceI	RCATGY	1 cut(s)	274
XcmI	CCANNNNNNNNNTGG	1 cut(s)	499
XmiI	GTMKAC	1 cut(s)	236
XspI	CTAG	1 cut(s)	444
ZraI	GACGTC	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.