Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004590.1

Orthogroup ID

OG0017977

Physical Location & Seq

Genomic Coordinates Forward (+)

37773 .. 38672

Gene Structure 900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004590.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

atgataattgagttaatttctagcagcatgcctgatgtcccagaagatgaacaccctgacattattggaaaaacatttgaggcggttgaaggggctgttctcgggctgcctattgatattgtcattgtggataccacaatccgcttattgggctgtgcaagaactgttgaagaatatcacttgattgttggcagggttacgatggacttcaagcatatttccaagcgtattgctgcaactaaattatccattgacggcttggagaaagtggcactcgatagtttggatcttagtgttagacaaacgccttgtattatttgtagggaagatcttgatcacattgatgttgttgaaggaagaattgtttatccagtgatgattactcgcctgccctgctctcatctgtatcatggagattgcattgttgggtggctgctaatgagccacttgtgtcctttgtgccgatatccaattccagttccaattgtggaagtggctggtgagcggccaattgtggaagtggctcgtgagctgcagactatggaaggggctggtgagctgcagattgttgaagtgacaaatgagctgccagtagtggaagtggccagtgaggggccaattgttgaagtaactgatgagcagccaattgtggaagtggccggtgagcaaccaattgtggacgtggctgatgagcgatcaaagacctctaggcaggttgattggcctatgctgctcaagatgtctgcaggtgctgtcgtaactggtatgctgctgtgcagattattgaagtggcactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

265

Amino Acids

29.28

Weight (kDa)

4.69

Isoelectric Point (pI)

32.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017977)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05200
rosa_chinensis	RchiOBHm_Chr6g0255331
rosa_multiflora	Rmu_sc0000903.1_g000028 Rmu_sc0004590.1_g000005 Rmu_sc0011027.1_g000004
rosa_roxburghii	Rroxscaffold_7G00210100 Rroxscaffold_7G00210130 Rroxscaffold_7G00210160
rosa_samantha	Rh6BG068900
rosa_wichuraiana	Rw6G006500 Rw6G006550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	737
Acc36I	ACCTGC	2 cut(s)	703, 737
AccBSI	CCGCTC	1 cut(s)	505
AciI	CCGC	3 cut(s)	83, 142, 505
AclWI	GGATC	1 cut(s)	294
AcoI	YGGCCR	3 cut(s)	506, 603, 657
AfiI	CCNNNNNNNGG	2 cut(s)	148, 612
AgsI	TTSAA	7 cut(s)	89, 170, 211, 353, 572, 626, 787
AjiI	CACGTC	1 cut(s)	682
AluBI	AGCT	3 cut(s)	532, 559, 586
AluI	AGCT	3 cut(s)	532, 559, 586
AlwI	GGATC	1 cut(s)	294
AlwNI	CAGNNNCTG	1 cut(s)	752
Ama87I	CYCGRG	1 cut(s)	101
AoxI	GGCC	5 cut(s)	506, 603, 614, 657, 722
AspS9I	GGNCC	1 cut(s)	614
AsuHPI	GGTGA	3 cut(s)	512, 566, 674
AvaI	CYCGRG	1 cut(s)	101
BalI	TGGCCA	1 cut(s)	605
BauI	CACGAG	1 cut(s)	525
BccI	CCATC	1 cut(s)	196
BceAI	ACGGC	1 cut(s)	271
BciVI	GTATCC	1 cut(s)	124
BclI	TGATCA	1 cut(s)	334
BfaI	CTAG	2 cut(s)	21, 708
BfmI	CTRYAG	3 cut(s)	533, 560, 744
BfuAI	ACCTGC	2 cut(s)	703, 737
BfuI	GTATCC	1 cut(s)	124
BglII	AGATCT	1 cut(s)	328
BmeT110I	CYCGRG	1 cut(s)	101
BmgBI	CACGTC	1 cut(s)	682
BmgT120I	GGNCC	1 cut(s)	614
BmiI	GGNNCC	1 cut(s)	615
BpuEI	CTTGAG	1 cut(s)	719
BsaBI	GATNNNNATC	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 612
Bse118I	RCCGGY	1 cut(s)	659
Bse1I	ACTGG	5 cut(s)	371, 476, 590, 606, 766
Bse8I	GATNNNNATC	1 cut(s)	333
BseJI	GATNNNNATC	1 cut(s)	333
BseLI	CCNNNNNNNGG	2 cut(s)	148, 612
BseNI	ACTGG	5 cut(s)	371, 476, 590, 606, 766
BsgI	GTGCAG	1 cut(s)	796
BshFI	GGCC	5 cut(s)	508, 605, 616, 659, 724
BsiHKCI	CYCGRG	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	660
BslFI	GGGAC	1 cut(s)	23
BslI	CCNNNNNNNGG	2 cut(s)	148, 612
BsmFI	GGGAC	1 cut(s)	23
BsnI	GGCC	5 cut(s)	508, 605, 616, 659, 724
BsoBI	CYCGRG	1 cut(s)	101
Bsp143I	GATC	4 cut(s)	286, 328, 334, 695
BspACI	CCGC	3 cut(s)	83, 142, 505
BspANI	GGCC	5 cut(s)	508, 605, 616, 659, 724
BspLI	GGNNCC	1 cut(s)	615
BspMAI	CTGCAG	3 cut(s)	537, 564, 748
BspMI	ACCTGC	2 cut(s)	703, 737
BspPI	GGATC	1 cut(s)	294
BsrBI	CCGCTC	1 cut(s)	505
BsrFI	RCCGGY	1 cut(s)	659
BsrI	ACTGG	5 cut(s)	371, 476, 590, 606, 766
BssAI	RCCGGY	1 cut(s)	659
BssMI	GATC	4 cut(s)	286, 328, 334, 695
BssSI	CACGAG	1 cut(s)	525
Bst2BI	CACGAG	1 cut(s)	525
Bst4CI	ACNGT	1 cut(s)	166
BstC8I	GCNNGC	2 cut(s)	29, 389
BstDEI	CTNAG	1 cut(s)	290
BstKTI	GATC	4 cut(s)	289, 331, 337, 698
BstMBI	GATC	4 cut(s)	286, 328, 334, 695
BstMWI	GCNNNNNNNGC	3 cut(s)	150, 393, 730
BstNSI	RCATGY	1 cut(s)	31
BstSFI	CTRYAG	3 cut(s)	533, 560, 744
BstX2I	RGATCY	2 cut(s)	286, 328
BstYI	RGATCY	2 cut(s)	286, 328
BsuI	GTATCC	1 cut(s)	124
BsuRI	GGCC	5 cut(s)	508, 605, 616, 659, 724
BtrI	CACGTC	1 cut(s)	682
BtsIMutI	CAGTG	3 cut(s)	378, 613, 793
BveI	ACCTGC	2 cut(s)	703, 737
Cac8I	GCNNGC	2 cut(s)	29, 389
CaiI	CAGNNNCTG	1 cut(s)	752
Cfr10I	RCCGGY	1 cut(s)	659
Cfr13I	GGNCC	1 cut(s)	614
CviAII	CATG	2 cut(s)	28, 410
DdeI	CTNAG	1 cut(s)	290
DpnI	GATC	4 cut(s)	288, 330, 336, 697
DpnII	GATC	4 cut(s)	286, 328, 334, 695
EaeI	YGGCCR	3 cut(s)	506, 603, 657
Eco32I	GATATC	1 cut(s)	467
Eco88I	CYCGRG	1 cut(s)	101
EcoRV	GATATC	1 cut(s)	467
FaeI	CATG	2 cut(s)	31, 413
FaiI	YATR	6 cut(s)	29, 216, 411, 542, 728, 767
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	2 cut(s)	27, 409
FbaI	TGATCA	1 cut(s)	334
FspBI	CTAG	2 cut(s)	21, 708
HaeIII	GGCC	5 cut(s)	508, 605, 616, 659, 724
HapII	CCGG	1 cut(s)	660
Hin1II	CATG	2 cut(s)	31, 413
HpaII	CCGG	1 cut(s)	660
HphI	GGTGA	3 cut(s)	512, 566, 674
Hpy166II	GTNNAC	1 cut(s)	679
Hpy188III	TCNNGA	3 cut(s)	332, 527, 736
Hpy8I	GTNNAC	1 cut(s)	679
HpyAV	CCTTC	3 cut(s)	83, 347, 539
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4IV	ACGT	1 cut(s)	681
HpyCH4V	TGCA	7 cut(s)	158, 236, 420, 535, 562, 746, 777
HpyF10VI	GCNNNNNNNGC	3 cut(s)	150, 393, 730
HpyF3I	CTNAG	1 cut(s)	290
HpySE526I	ACGT	1 cut(s)	681
Hsp92II	CATG	2 cut(s)	31, 413
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	4 cut(s)	286, 328, 334, 695
MaeI	CTAG	2 cut(s)	21, 708
MaeII	ACGT	1 cut(s)	681
MaeIII	GTNAC	4 cut(s)	196, 574, 628, 757
MalI	GATC	4 cut(s)	288, 330, 336, 697
MbiI	CCGCTC	1 cut(s)	505
MboI	GATC	4 cut(s)	286, 328, 334, 695
MboII	GAAGA	4 cut(s)	56, 182, 338, 369
MfeI	CAATTG	5 cut(s)	483, 510, 618, 645, 672
MflI	RGATCY	2 cut(s)	286, 328
MlsI	TGGCCA	1 cut(s)	605
MluNI	TGGCCA	1 cut(s)	605
MnlI	CCTC	3 cut(s)	73, 604, 715
Mox20I	TGGCCA	1 cut(s)	605
MscI	TGGCCA	1 cut(s)	605
MseI	TTAA	1 cut(s)	14
MslI	CAYNNNNRTG	1 cut(s)	342
Msp20I	TGGCCA	1 cut(s)	605
MspI	CCGG	1 cut(s)	660
MunI	CAATTG	5 cut(s)	483, 510, 618, 645, 672
MwoI	GCNNNNNNNGC	3 cut(s)	150, 393, 730
NdeII	GATC	4 cut(s)	286, 328, 334, 695
NlaIII	CATG	2 cut(s)	31, 413
NlaIV	GGNNCC	1 cut(s)	615
NmuCI	GTSAC	1 cut(s)	574
NspI	RCATGY	1 cut(s)	31
PaeI	GCATGC	1 cut(s)	31
PaqCI	CACCTGC	1 cut(s)	737
PspN4I	GGNNCC	1 cut(s)	615
PspPI	GGNCC	1 cut(s)	614
PstI	CTGCAG	3 cut(s)	537, 564, 748
PstNI	CAGNNNCTG	1 cut(s)	752
PsuI	RGATCY	2 cut(s)	286, 328
RseI	CAYNNNNRTG	1 cut(s)	342
SaqAI	TTAA	1 cut(s)	14
Sau3AI	GATC	4 cut(s)	286, 328, 334, 695
Sau96I	GGNCC	1 cut(s)	614
SetI	ASST	7 cut(s)	534, 561, 588, 684, 707, 717, 751
SfcI	CTRYAG	3 cut(s)	533, 560, 744
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	734
SmoI	CTYRAG	1 cut(s)	734
SphI	GCATGC	1 cut(s)	31
SsiI	CCGC	3 cut(s)	83, 142, 505
SspMI	CTAG	2 cut(s)	21, 708
TaaI	ACNGT	1 cut(s)	166
TaiI	ACGT	1 cut(s)	684
TaqI	TCGA	1 cut(s)	276
TauI	GCSGC	1 cut(s)	508
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TscAI	CASTG	2 cut(s)	378, 613
TseFI	GTSAC	1 cut(s)	574
Tsp45I	GTSAC	1 cut(s)	574
TspDTI	ATGAA	1 cut(s)	63
TspRI	CASTG	2 cut(s)	378, 613
XceI	RCATGY	1 cut(s)	31
XcmI	CCANNNNNNNNNTGG	1 cut(s)	256
XspI	CTAG	2 cut(s)	21, 708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.