Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000903.1

Orthogroup ID

OG0017977

Physical Location & Seq

Genomic Coordinates Forward (+)

101111 .. 102196

Gene Structure 1086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000903.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

atgtcaattgagttccgtgctttttgtacgggagcgtggcaaaaagaaacaaatgaatgtgttaaagttgaaatcccaagtggcaaccttttgatcaggtttattctgtgtaagagaactggaagccgcaggtttgatactctgggaggcataacttatgatgaccccccaactgtcctagttaacaaaatacttgtgatccatccctctcatgttttatccaacagaggtgcttatacaaggagcctaggtgagtttatttccagcagcatgcctgacgtcccagaatatgaacaccccgacattcttgagaaaacatttaaggtagttaaaggggctgtgctggggttgcttattgatatcgtcgttgtggataccactgtccgcttatggggctgcgcaagaagtgttgaagaataccacatgatccttgatagtgttactagggaactcatggatatttccaagcgtattgctgcaactaaatcatccattgatggtttggaggaagtgaaacttgagagtttggatcttactgcaagacaaacaacctgtgttatttgtaaggaaggtcttgatcgcgttgatgttgtagaagaaagaattgatcatccactgttgattactcgcttgccctgctcacatctgtatcatggagattgcattgctgggtggctgcagttgagtcacctgtgccctttgtgccgatatccaatgccgattgtgaaagtagcatatgagctgccaagtttgcaagtgacaggtgatggacctgttggggaagtggcgggtcaggggccaattggggaagtgactggtgagccgcagactgtggaagtggcgggacagggactaattggggaagtgactggtgagccgcaggctgtggaaatggcgggtgaggggccaattgttgaagtgaccgatgaccagccaattgtggaagtagccggtgagcaaccaatttttgaagtggctgatgagccatcaaaaagttccagggaggttgattggcctatgctgctcaagatgtctgcaggtggtatcataactgctatgctgctttatagattattgaggaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

361

Amino Acids

39.63

Weight (kDa)

4.87

Isoelectric Point (pI)

37.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017977)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05200
rosa_chinensis	RchiOBHm_Chr6g0255331
rosa_multiflora	Rmu_sc0000903.1_g000028 Rmu_sc0004590.1_g000005 Rmu_sc0011027.1_g000004
rosa_roxburghii	Rroxscaffold_7G00210100 Rroxscaffold_7G00210130 Rroxscaffold_7G00210160
rosa_samantha	Rh6BG068900
rosa_wichuraiana	Rw6G006500 Rw6G006550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1028
AatII	GACGTC	1 cut(s)	282
Acc16I	TGCGCA	1 cut(s)	400
Acc36I	ACCTGC	2 cut(s)	120, 1028
AccII	CGCG	1 cut(s)	582
AciI	CCGC	7 cut(s)	127, 385, 788, 824, 842, 878, 896
AclWI	GGATC	3 cut(s)	193, 421, 537
AcyI	GRCGYC	1 cut(s)	279
AfaI	GTAC	1 cut(s)	28
AfiI	CCNNNNNNNGG	1 cut(s)	391
AgsI	TTSAA	4 cut(s)	71, 413, 917, 971
AjnI	CCWGG	1 cut(s)	998
AluBI	AGCT	1 cut(s)	742
AluI	AGCT	1 cut(s)	742
AlwI	GGATC	3 cut(s)	193, 421, 537
AoxI	GGCC	3 cut(s)	797, 905, 1013
ApeKI	GCWGC	7 cut(s)	267, 396, 476, 676, 742, 1021, 1060
AspA2I	CCTAGG	1 cut(s)	247
AspLEI	GCGC	1 cut(s)	401
AspS9I	GGNCC	3 cut(s)	770, 797, 905
AsuHPI	GGTGA	7 cut(s)	263, 680, 776, 830, 884, 911, 965
AvaII	GGWCC	1 cut(s)	770
AvrII	CCTAGG	1 cut(s)	247
BaeGI	GKGCMC	1 cut(s)	698
BaeI	ACNNNNGTAYC	4 cut(s)	366, 399, 632, 665
BbvI	GCAGC	7 cut(s)	279, 383, 463, 663, 729, 1008, 1047
BccI	CCATC	4 cut(s)	210, 491, 761, 994
BciT130I	CCWGG	1 cut(s)	1000
BciVI	GTATCC	1 cut(s)	367
BclI	TGATCA	2 cut(s)	93, 607
BfaI	CTAG	3 cut(s)	179, 248, 444
BfmI	CTRYAG	2 cut(s)	677, 1035
BfuAI	ACCTGC	2 cut(s)	120, 1028
BfuI	GTATCC	1 cut(s)	367
BlnI	CCTAGG	1 cut(s)	247
Bme1390I	CCNGG	1 cut(s)	1000
Bme18I	GGWCC	1 cut(s)	770
BmgT120I	GGNCC	3 cut(s)	770, 797, 905
BmiI	GGNNCC	3 cut(s)	245, 798, 906
BmrFI	CCNGG	1 cut(s)	1000
BpuEI	CTTGAG	3 cut(s)	329, 539, 1010
BsaHI	GRCGYC	1 cut(s)	279
BsaJI	CCNNGG	2 cut(s)	247, 999
BsaXI	ACNNNNNCTCC	2 cut(s)	235, 265
Bsc4I	CCNNNNNNNGG	1 cut(s)	391
Bse118I	RCCGGY	1 cut(s)	950
Bse1I	ACTGG	3 cut(s)	124, 820, 874
Bse3DI	GCAATG	1 cut(s)	663
BseBI	CCWGG	1 cut(s)	1000
BseDI	CCNNGG	2 cut(s)	247, 999
BseGI	GGATG	3 cut(s)	202, 488, 610
BseLI	CCNNNNNNNGG	1 cut(s)	391
BseMI	GCAATG	1 cut(s)	663
BseNI	ACTGG	3 cut(s)	124, 820, 874
BseSI	GKGCMC	1 cut(s)	698
BseXI	GCAGC	7 cut(s)	279, 383, 463, 663, 729, 1008, 1047
BseYI	CCCAGC	2 cut(s)	343, 668
Bsh1236I	CGCG	1 cut(s)	582
BshFI	GGCC	3 cut(s)	799, 907, 1015
BsiSI	CCGG	1 cut(s)	951
BslFI	GGGAC	3 cut(s)	266, 858, 864
BslI	CCNNNNNNNGG	1 cut(s)	391
BsmFI	GGGAC	3 cut(s)	266, 858, 864
BsnI	GGCC	3 cut(s)	799, 907, 1015
Bsp1286I	GDGCHC	1 cut(s)	698
Bsp143I	GATC	6 cut(s)	93, 198, 426, 529, 577, 607
BspACI	CCGC	7 cut(s)	127, 385, 788, 824, 842, 878, 896
BspANI	GGCC	3 cut(s)	799, 907, 1015
BspFNI	CGCG	1 cut(s)	582
BspLI	GGNNCC	3 cut(s)	245, 798, 906
BspMAI	CTGCAG	2 cut(s)	681, 1039
BspMI	ACCTGC	2 cut(s)	120, 1028
BspPI	GGATC	3 cut(s)	193, 421, 537
BsrDI	GCAATG	1 cut(s)	663
BsrFI	RCCGGY	1 cut(s)	950
BsrI	ACTGG	3 cut(s)	124, 820, 874
BssAI	RCCGGY	1 cut(s)	950
BssECI	CCNNGG	2 cut(s)	247, 999
BssMI	GATC	6 cut(s)	93, 198, 426, 529, 577, 607
BssNI	GRCGYC	1 cut(s)	279
BssT1I	CCWWGG	1 cut(s)	247
Bst2UI	CCWGG	1 cut(s)	1000
Bst4CI	ACNGT	4 cut(s)	175, 382, 618, 832
BstACI	GRCGYC	1 cut(s)	279
BstC8I	GCNNGC	3 cut(s)	272, 632, 882
BstF5I	GGATG	3 cut(s)	202, 488, 610
BstFNI	CGCG	1 cut(s)	582
BstHHI	GCGC	1 cut(s)	401
BstKTI	GATC	6 cut(s)	96, 201, 429, 532, 580, 610
BstMBI	GATC	6 cut(s)	93, 198, 426, 529, 577, 607
BstMWI	GCNNNNNNNGC	6 cut(s)	349, 393, 636, 702, 751, 1021
BstNI	CCWGG	1 cut(s)	1000
BstNSI	RCATGY	1 cut(s)	274
BstSCI	CCNGG	1 cut(s)	998
BstSFI	CTRYAG	2 cut(s)	677, 1035
BstSLI	GKGCMC	1 cut(s)	698
BstUI	CGCG	1 cut(s)	582
BstV1I	GCAGC	7 cut(s)	279, 383, 463, 663, 729, 1008, 1047
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
BsuI	GTATCC	1 cut(s)	367
BsuRI	GGCC	3 cut(s)	799, 907, 1015
BtsCI	GGATG	3 cut(s)	202, 488, 610
BtsIMutI	CAGTG	2 cut(s)	378, 614
BveI	ACCTGC	2 cut(s)	120, 1028
Cac8I	GCNNGC	3 cut(s)	272, 632, 882
CfoI	GCGC	1 cut(s)	401
Cfr10I	RCCGGY	1 cut(s)	950
Cfr13I	GGNCC	3 cut(s)	770, 797, 905
Csp6I	GTAC	1 cut(s)	27
CviAII	CATG	5 cut(s)	212, 271, 424, 454, 653
CviQI	GTAC	1 cut(s)	27
DpnI	GATC	6 cut(s)	95, 200, 428, 531, 579, 609
DpnII	GATC	6 cut(s)	93, 198, 426, 529, 577, 607
Eco130I	CCWWGG	1 cut(s)	247
Eco32I	GATATC	2 cut(s)	361, 710
Eco47I	GGWCC	1 cut(s)	770
EcoRII	CCWGG	1 cut(s)	998
EcoRV	GATATC	2 cut(s)	361, 710
EcoT14I	CCWWGG	1 cut(s)	247
ErhI	CCWWGG	1 cut(s)	247
FaeI	CATG	5 cut(s)	215, 274, 427, 457, 656
FalI	AAGNNNNNCTT	2 cut(s)	501, 533
FaqI	GGGAC	3 cut(s)	266, 858, 864
FatI	CATG	5 cut(s)	211, 270, 423, 453, 652
FauI	CCCGC	3 cut(s)	781, 835, 889
FauNDI	CATATG	1 cut(s)	736
FbaI	TGATCA	2 cut(s)	93, 607
FokI	GGATG	3 cut(s)	189, 475, 597
FspBI	CTAG	3 cut(s)	179, 248, 444
FspI	TGCGCA	1 cut(s)	400
GlaI	GCGC	1 cut(s)	400
GsaI	CCCAGC	2 cut(s)	347, 672
HaeIII	GGCC	3 cut(s)	799, 907, 1015
HapII	CCGG	1 cut(s)	951
HhaI	GCGC	1 cut(s)	401
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	5 cut(s)	215, 274, 427, 457, 656
Hin6I	GCGC	1 cut(s)	399
HinP1I	GCGC	1 cut(s)	399
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	1 cut(s)	685
HpaI	GTTAAC	1 cut(s)	184
HpaII	CCGG	1 cut(s)	951
HphI	GGTGA	7 cut(s)	263, 680, 776, 830, 884, 911, 965
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188III	TCNNGA	3 cut(s)	308, 575, 1027
Hpy8I	GTNNAC	1 cut(s)	184
Hpy99I	CGWCG	1 cut(s)	368
HpyAV	CCTTC	1 cut(s)	563
HpyCH4III	ACNGT	4 cut(s)	175, 382, 618, 832
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	6 cut(s)	479, 539, 663, 679, 754, 1037
HpyF10VI	GCNNNNNNNGC	6 cut(s)	349, 393, 636, 702, 751, 1021
HpySE526I	ACGT	1 cut(s)	279
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	5 cut(s)	215, 274, 427, 457, 656
HspAI	GCGC	1 cut(s)	399
Ksp22I	TGATCA	2 cut(s)	93, 607
KspAI	GTTAAC	1 cut(s)	184
Kzo9I	GATC	6 cut(s)	93, 198, 426, 529, 577, 607
LmnI	GCTCC	2 cut(s)	32, 243
Lsp1109I	GCAGC	7 cut(s)	279, 383, 463, 663, 729, 1008, 1047
MaeI	CTAG	3 cut(s)	179, 248, 444
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	6 cut(s)	439, 686, 757, 811, 865, 919
MalI	GATC	6 cut(s)	95, 200, 428, 531, 579, 609
MboI	GATC	6 cut(s)	93, 198, 426, 529, 577, 607
MboII	GAAGA	2 cut(s)	425, 608
MfeI	CAATTG	4 cut(s)	6, 801, 909, 936
MflI	RGATCY	1 cut(s)	529
MhlI	GDGCHC	1 cut(s)	698
MluCI	AATT	8 cut(s)	6, 603, 801, 855, 909, 936, 963, 1081
MlyI	GAGTC	1 cut(s)	694
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	7 cut(s)	140, 217, 221, 499, 895, 997, 1071
MseI	TTAA	4 cut(s)	63, 183, 321, 330
MspI	CCGG	1 cut(s)	951
MspR9I	CCNGG	1 cut(s)	1000
MunI	CAATTG	4 cut(s)	6, 801, 909, 936
MvaI	CCWGG	1 cut(s)	1000
MvnI	CGCG	1 cut(s)	582
MwoI	GCNNNNNNNGC	6 cut(s)	349, 393, 636, 702, 751, 1021
NdeI	CATATG	1 cut(s)	736
NdeII	GATC	6 cut(s)	93, 198, 426, 529, 577, 607
NlaIII	CATG	5 cut(s)	215, 274, 427, 457, 656
NlaIV	GGNNCC	3 cut(s)	245, 798, 906
NmuCI	GTSAC	5 cut(s)	686, 757, 811, 865, 919
NsbI	TGCGCA	1 cut(s)	400
NspI	RCATGY	1 cut(s)	274
PaeI	GCATGC	1 cut(s)	274
PaqCI	CACCTGC	1 cut(s)	1028
PleI	GAGTC	1 cut(s)	693
PpsI	GAGTC	1 cut(s)	693
Psp6I	CCWGG	1 cut(s)	998
PspFI	CCCAGC	2 cut(s)	343, 668
PspGI	CCWGG	1 cut(s)	998
PspN4I	GGNNCC	3 cut(s)	245, 798, 906
PspPI	GGNCC	3 cut(s)	770, 797, 905
PstI	CTGCAG	2 cut(s)	681, 1039
PsuI	RGATCY	1 cut(s)	529
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
SaqAI	TTAA	4 cut(s)	63, 183, 321, 330
Sau3AI	GATC	6 cut(s)	93, 198, 426, 529, 577, 607
Sau96I	GGNCC	3 cut(s)	770, 797, 905
SchI	GAGTC	1 cut(s)	694
ScrFI	CCNGG	1 cut(s)	1000
SduI	GDGCHC	1 cut(s)	698
SfcI	CTRYAG	2 cut(s)	677, 1035
SinI	GGWCC	1 cut(s)	770
SmlI	CTYRAG	3 cut(s)	308, 518, 1025
SmoI	CTYRAG	3 cut(s)	308, 518, 1025
SphI	GCATGC	1 cut(s)	274
Sse9I	AATT	8 cut(s)	6, 603, 801, 855, 909, 936, 963, 1081
SsiI	CCGC	7 cut(s)	127, 385, 788, 824, 842, 878, 896
SspMI	CTAG	3 cut(s)	179, 248, 444
StyD4I	CCNGG	1 cut(s)	998
StyI	CCWWGG	1 cut(s)	247
TaaI	ACNGT	4 cut(s)	175, 382, 618, 832
TaiI	ACGT	1 cut(s)	282
TaqII	GACCGA	1 cut(s)	938
TasI	AATT	8 cut(s)	6, 603, 801, 855, 909, 936, 963, 1081
TauI	GCSGC	3 cut(s)	129, 826, 880
Tru1I	TTAA	4 cut(s)	63, 183, 321, 330
Tru9I	TTAA	4 cut(s)	63, 183, 321, 330
TscAI	CASTG	2 cut(s)	385, 621
TseFI	GTSAC	5 cut(s)	686, 757, 811, 865, 919
TseI	GCWGC	7 cut(s)	267, 396, 476, 676, 742, 1021, 1060
Tsp45I	GTSAC	5 cut(s)	686, 757, 811, 865, 919
TspDTI	ATGAA	2 cut(s)	69, 306
TspGWI	ACGGA	1 cut(s)	5
TspRI	CASTG	2 cut(s)	385, 621
VpaK11BI	GGWCC	1 cut(s)	770
XceI	RCATGY	1 cut(s)	274
XcmI	CCANNNNNNNNNTGG	1 cut(s)	499
XmaJI	CCTAGG	1 cut(s)	247
XspI	CTAG	3 cut(s)	179, 248, 444
ZraI	GACGTC	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.