Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0017977

Physical Location & Seq

Genomic Coordinates Forward (+)

10364342 .. 10365406

Gene Structure 1065 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G006500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGTATACGGAGATGATAATTGAGTTAATTTCTAGCAGCGTGCCTGATGTCCCAGAAGATGAACACCCTGACATTATTGGAAAAACATTTGAGGCGGTTGAAGGGGCTGTTCTCGGGCTGCCTATTGATATTGTCATTGTGGATACCACAATCCGCTTATTGGGCTGTGCAAGAACTGTTGAAGAATATCACTTGATTGTTGGCAGGGTTACGATGGACTTCAAGCATATTTCCAAGCGTATTGCTGCAACTAAATTATCCATTGACGGCTTGGAGAAAGTGGCACTCGATAGTTTGGATCTTAGTGTTAGACAAACGCCTTGTATTATTTGTAGGGAAGATCTTGATCACATTGATGTTGTTGAAGGAAGAATTGTTTATCCAGTGATGATTACTCGCCTGCCCTGCTCTCATCTGTATCATGGAGATTGCATTGTTGGGTGGCTGCTAATGAGCCACTTGTGTCCTTTGTGCCGATATCCAATTCCAGTTGTGAAAGTGCCGTGTGAGTTGCCCATTTTGGAAGTGACGGCTGAGGGGCCAATTTTGGAAGGGGTCGGCGAGGGGCCAATTGGGGAAGTGACTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

196

Amino Acids

21.58

Weight (kDa)

4.68

Isoelectric Point (pI)

31.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	108 - 159	8.2e-09	Ring finger domain
zf-rbx1	PF12678	108 - 159	4.5e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0017977)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05200
rosa_chinensis	RchiOBHm_Chr6g0255331
rosa_multiflora	Rmu_sc0000903.1_g000028 Rmu_sc0004590.1_g000005 Rmu_sc0011027.1_g000004
rosa_roxburghii	Rroxscaffold_7G00210100 Rroxscaffold_7G00210130 Rroxscaffold_7G00210160
rosa_samantha	Rh6BG068900
rosa_wichuraiana	Rw6G006500 Rw6G006550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	2 cut(s)	95, 154
AclWI	GGATC	1 cut(s)	306
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	4 cut(s)	101, 182, 223, 365
AlwI	GGATC	1 cut(s)	306
Ama87I	CYCGRG	1 cut(s)	113
AoxI	GGCC	2 cut(s)	539, 566
ApeKI	GCWGC	4 cut(s)	36, 118, 245, 445
AspS9I	GGNCC	2 cut(s)	539, 566
AvaI	CYCGRG	1 cut(s)	113
BbvCI	CCTCAGC	1 cut(s)	534
BbvI	GCAGC	4 cut(s)	48, 105, 232, 432
BccI	CCATC	1 cut(s)	208
BceAI	ACGGC	3 cut(s)	283, 487, 546
BciVI	GTATCC	1 cut(s)	136
BclI	TGATCA	1 cut(s)	346
BfaI	CTAG	1 cut(s)	33
BfuI	GTATCC	1 cut(s)	136
BglII	AGATCT	1 cut(s)	340
BisI	GCNGC	4 cut(s)	37, 119, 246, 446
BlsI	GCNGC	4 cut(s)	38, 120, 247, 447
BmeT110I	CYCGRG	1 cut(s)	113
BmgT120I	GGNCC	2 cut(s)	539, 566
BmiI	GGNNCC	2 cut(s)	540, 567
Bpu10I	CCTNAGC	1 cut(s)	534
BsaBI	GATNNNNATC	1 cut(s)	345
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse1I	ACTGG	2 cut(s)	383, 488
Bse8I	GATNNNNATC	1 cut(s)	345
BseJI	GATNNNNATC	1 cut(s)	345
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMII	CTCAG	1 cut(s)	525
BseNI	ACTGG	2 cut(s)	383, 488
BseXI	GCAGC	4 cut(s)	48, 105, 232, 432
BshFI	GGCC	2 cut(s)	541, 568
BsiHKCI	CYCGRG	1 cut(s)	113
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmFI	GGGAC	1 cut(s)	35
BsnI	GGCC	2 cut(s)	541, 568
BsoBI	CYCGRG	1 cut(s)	113
Bsp143I	GATC	3 cut(s)	298, 340, 346
BspACI	CCGC	2 cut(s)	95, 154
BspANI	GGCC	2 cut(s)	541, 568
BspCNI	CTCAG	1 cut(s)	526
BspLI	GGNNCC	2 cut(s)	540, 567
BspPI	GGATC	1 cut(s)	306
BsrI	ACTGG	2 cut(s)	383, 488
BssMI	GATC	3 cut(s)	298, 340, 346
BssNAI	GTATAC	1 cut(s)	6
Bst1107I	GTATAC	1 cut(s)	6
Bst4CI	ACNGT	1 cut(s)	178
BstC8I	GCNNGC	2 cut(s)	41, 401
BstDEI	CTNAG	2 cut(s)	302, 534
BstKTI	GATC	3 cut(s)	301, 343, 349
BstMBI	GATC	3 cut(s)	298, 340, 346
BstMWI	GCNNNNNNNGC	2 cut(s)	162, 405
BstV1I	GCAGC	4 cut(s)	48, 105, 232, 432
BstX2I	RGATCY	2 cut(s)	298, 340
BstYI	RGATCY	2 cut(s)	298, 340
BstZ17I	GTATAC	1 cut(s)	6
BsuI	GTATCC	1 cut(s)	136
BsuRI	GGCC	2 cut(s)	541, 568
BtsIMutI	CAGTG	1 cut(s)	390
Cac8I	GCNNGC	2 cut(s)	41, 401
Cfr13I	GGNCC	2 cut(s)	539, 566
CviAII	CATG	1 cut(s)	422
CviJI	RGCY	9 cut(s)	107, 118, 165, 270, 445, 456, 533, 541, 568
CviKI_1	RGCY	9 cut(s)	107, 118, 165, 270, 445, 456, 533, 541, 568
DdeI	CTNAG	2 cut(s)	302, 534
DpnI	GATC	3 cut(s)	300, 342, 348
DpnII	GATC	3 cut(s)	298, 340, 346
Eco32I	GATATC	1 cut(s)	479
Eco88I	CYCGRG	1 cut(s)	113
EcoRV	GATATC	1 cut(s)	479
FaeI	CATG	1 cut(s)	425
FaiI	YATR	3 cut(s)	6, 228, 423
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	1 cut(s)	421
FbaI	TGATCA	1 cut(s)	346
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	4 cut(s)	37, 119, 246, 446
Fsp4HI	GCNGC	4 cut(s)	37, 119, 246, 446
FspBI	CTAG	1 cut(s)	33
GluI	GCNGC	4 cut(s)	37, 119, 246, 446
HaeIII	GGCC	2 cut(s)	541, 568
Hin1II	CATG	1 cut(s)	425
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188III	TCNNGA	1 cut(s)	344
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	3 cut(s)	95, 359, 545
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4V	TGCA	3 cut(s)	170, 248, 432
HpyF10VI	GCNNNNNNNGC	2 cut(s)	162, 405
HpyF3I	CTNAG	2 cut(s)	302, 534
Hsp92II	CATG	1 cut(s)	425
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	3 cut(s)	298, 340, 346
LpnPI	CCDG	8 cut(s)	57, 66, 81, 190, 396, 413, 418, 501
Lsp1109I	GCAGC	4 cut(s)	48, 105, 232, 432
MaeI	CTAG	1 cut(s)	33
MaeIII	GTNAC	3 cut(s)	208, 526, 580
MalI	GATC	3 cut(s)	300, 342, 348
MboI	GATC	3 cut(s)	298, 340, 346
MboII	GAAGA	4 cut(s)	68, 194, 350, 381
MfeI	CAATTG	1 cut(s)	570
MflI	RGATCY	2 cut(s)	298, 340
MluCI	AATT	7 cut(s)	18, 27, 254, 372, 483, 543, 570
MnlI	CCTC	3 cut(s)	85, 529, 556
MseI	TTAA	2 cut(s)	26, 589
MslI	CAYNNNNRTG	1 cut(s)	354
MunI	CAATTG	1 cut(s)	570
MwoI	GCNNNNNNNGC	2 cut(s)	162, 405
NdeII	GATC	3 cut(s)	298, 340, 346
NlaIII	CATG	1 cut(s)	425
NlaIV	GGNNCC	2 cut(s)	540, 567
NmuCI	GTSAC	2 cut(s)	526, 580
PkrI	GCNGC	4 cut(s)	38, 120, 247, 447
PspN4I	GGNNCC	2 cut(s)	540, 567
PspPI	GGNCC	2 cut(s)	539, 566
PsuI	RGATCY	2 cut(s)	298, 340
RseI	CAYNNNNRTG	1 cut(s)	354
SaqAI	TTAA	2 cut(s)	26, 589
SatI	GCNGC	4 cut(s)	37, 119, 246, 446
Sau3AI	GATC	3 cut(s)	298, 340, 346
Sau96I	GGNCC	2 cut(s)	539, 566
SmiMI	CAYNNNNRTG	1 cut(s)	354
Sse9I	AATT	7 cut(s)	18, 27, 254, 372, 483, 543, 570
SsiI	CCGC	2 cut(s)	95, 154
SspMI	CTAG	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	178
TaqI	TCGA	1 cut(s)	288
TasI	AATT	7 cut(s)	18, 27, 254, 372, 483, 543, 570
Tru1I	TTAA	2 cut(s)	26, 589
Tru9I	TTAA	2 cut(s)	26, 589
TscAI	CASTG	1 cut(s)	390
TseFI	GTSAC	2 cut(s)	526, 580
TseI	GCWGC	4 cut(s)	36, 118, 245, 445
Tsp45I	GTSAC	2 cut(s)	526, 580
TspDTI	ATGAA	1 cut(s)	75
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	390
XcmI	CCANNNNNNNNNTGG	1 cut(s)	268
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.