FvH4_2g08060

UPF0496 protein At4g34320-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0017240
Physical Location & Seq
Reverse (-)
6969023 .. 6969739
717 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g08060.t1

Sequence Viewer

Length: 717 bp
ATGACAGAACTGAGTGAGTTCATAGAGTCAGCTCGTGAAAATCATAAATTTATTCAATCTGTTGTTCAACAGTACTTTGGCAACGGTCTGCCAACTGGAGTCGAAGGAAGTCGCTGCAGGATGATTTCGGAGAAACTGAAGAAGCTCAAGACCTCGGATGACCATTCTGCTGAGAGGCTACTCAAGCAGATCCAATCTTTGCGCAAGGAGTACGAAAATACGCTGAAAAATTCTGAACTTGTGAAACAAGAGATTGACACGGAGCATGAACTTGCATGTGCTCTGGAAAAAAGAAAAACAAAGAAAAGTAAATGCATTGCGACGACTCTGCTCATTTTTGGCACTCTGGGAGCTACCATTGTTGGTCATCCACACATGGGTGCCGCTGCCGGTATGCTTGTTCGTCGACAAGTTTCTAAAGCATGTCGCACACGAACAAAAGAGGAAGAAGAACGACATGAAAGTGCTCTTCAGGCTCACTACTCGACGGAAGAAAAAATGATTGTAACCATTGAGGAACTGGGGAGCATTAAGTTTCTCATTGATAAGGTTGTAAATGAGATCGATTCGCTCTTGAGGAGTACACAGGTGGCAATTAACACTGGAGAAGTAAATTACGCGATGAAGACTTTTAAGAATAAGATGGAAACGTTTCTGAAGCAAATTGATGATTTGGATACAGAAGCAGGCAAGTATATAGTGAACCTAGAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF677

Protein Analysis

239

Amino Acids

27.02

Weight (kDa)

7.06

Isoelectric Point (pI)

48.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF677 PF05055 3 - 232 1.8e-16 Protein of unknown function (DUF677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 203
AccB1I GGYRCC 1 cut(s) 380
AccI GTMKAC 1 cut(s) 406
AccII CGCG 1 cut(s) 620
AciI CCGC 1 cut(s) 384
AclI AACGTT 1 cut(s) 650
AclWI GGATC 1 cut(s) 184
AcsI RAATTY 2 cut(s) 47, 229
AcuI CTGAAG 3 cut(s) 158, 455, 677
AfaI GTAC 3 cut(s) 74, 212, 583
AfiI CCNNNNNNNGG 1 cut(s) 377
AgsI TTSAA 2 cut(s) 56, 68
AleI CACNNNNGTG 1 cut(s) 378
AluBI AGCT 3 cut(s) 32, 145, 353
AluI AGCT 3 cut(s) 32, 145, 353
Alw21I GWGCWC 2 cut(s) 283, 469
AlwI GGATC 1 cut(s) 184
ApeKI GCWGC 2 cut(s) 114, 386
ApoI RAATTY 2 cut(s) 47, 229
Asp700I GAANNNNTTC 1 cut(s) 651
AspLEI GCGC 1 cut(s) 204
BanI GGYRCC 1 cut(s) 380
BauI CACGAG 1 cut(s) 33
BbsI GAAGAC 1 cut(s) 632
Bbv12I GWGCWC 2 cut(s) 283, 469
BbvI GCAGC 2 cut(s) 101, 373
BccI CCATC 1 cut(s) 637
BcgI CGANNNNNNTGC 2 cut(s) 310, 344
BciVI GTATCC 1 cut(s) 670
BfaI CTAG 2 cut(s) 707, 715
BfmI CTRYAG 1 cut(s) 115
BfuI GTATCC 1 cut(s) 670
BisI GCNGC 3 cut(s) 115, 384, 387
BlsI GCNGC 3 cut(s) 116, 385, 388
BmcAI AGTACT 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 382
BmrI ACTGGG 1 cut(s) 530
BmuI ACTGGG 1 cut(s) 530
BpiI GAAGAC 1 cut(s) 632
BpmI CTGGAG 2 cut(s) 117, 624
BpuEI CTTGAG 3 cut(s) 131, 167, 595
Bsa29I ATCGAT 1 cut(s) 564
BsaJI CCNNGG 1 cut(s) 153
Bsc4I CCNNNNNNNGG 1 cut(s) 377
Bse118I RCCGGY 1 cut(s) 389
Bse1I ACTGG 3 cut(s) 100, 525, 607
Bse3DI GCAATG 1 cut(s) 315
BseCI ATCGAT 1 cut(s) 564
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 3 cut(s) 126, 163, 367
BseLI CCNNNNNNNGG 1 cut(s) 377
BseMI GCAATG 1 cut(s) 315
BseMII CTCAG 1 cut(s) 162
BseNI ACTGG 3 cut(s) 100, 525, 607
BseRI GAGGAG 1 cut(s) 592
BseXI GCAGC 2 cut(s) 101, 373
Bsh1236I CGCG 1 cut(s) 620
BshNI GGYRCC 1 cut(s) 380
BshVI ATCGAT 1 cut(s) 564
BsiHKAI GWGCWC 2 cut(s) 283, 469
BsiSI CCGG 1 cut(s) 390
BslI CCNNNNNNNGG 1 cut(s) 377
Bsp1286I GDGCHC 2 cut(s) 283, 469
Bsp143I GATC 2 cut(s) 189, 561
BspACI CCGC 1 cut(s) 384
BspCNI CTCAG 1 cut(s) 163
BspDI ATCGAT 1 cut(s) 564
BspFNI CGCG 1 cut(s) 620
BspLI GGNNCC 1 cut(s) 382
BspMAI CTGCAG 1 cut(s) 119
BspPI GGATC 1 cut(s) 184
BspQI GCTCTTC 1 cut(s) 474
BspT107I GGYRCC 1 cut(s) 380
BsrDI GCAATG 1 cut(s) 315
BsrFI RCCGGY 1 cut(s) 389
BsrI ACTGG 3 cut(s) 100, 525, 607
BssAI RCCGGY 1 cut(s) 389
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 2 cut(s) 189, 561
BssSI CACGAG 1 cut(s) 33
Bst2BI CACGAG 1 cut(s) 33
Bst4CI ACNGT 2 cut(s) 72, 86
Bst6I CTCTTC 1 cut(s) 474
BstC8I GCNNGC 1 cut(s) 688
BstDEI CTNAG 2 cut(s) 11, 171
BstF5I GGATG 3 cut(s) 126, 163, 367
BstFNI CGCG 1 cut(s) 620
BstHHI GCGC 1 cut(s) 204
BstKTI GATC 2 cut(s) 192, 564
BstMBI GATC 2 cut(s) 189, 561
BstMWI GCNNNNNNNGC 2 cut(s) 184, 473
BstNSI RCATGY 2 cut(s) 279, 426
BstSFI CTRYAG 1 cut(s) 115
BstUI CGCG 1 cut(s) 620
BstV1I GCAGC 2 cut(s) 101, 373
BstV2I GAAGAC 1 cut(s) 632
BstX2I RGATCY 1 cut(s) 189
BstYI RGATCY 1 cut(s) 189
Bsu15I ATCGAT 1 cut(s) 564
BsuI GTATCC 1 cut(s) 670
BsuTUI ATCGAT 1 cut(s) 564
BtgZI GCGATG 1 cut(s) 635
BtsCI GGATG 3 cut(s) 126, 163, 367
BtsIMutI CAGTG 1 cut(s) 600
Cac8I GCNNGC 1 cut(s) 688
CfoI GCGC 1 cut(s) 204
Cfr10I RCCGGY 1 cut(s) 389
ClaI ATCGAT 1 cut(s) 564
Csp6I GTAC 3 cut(s) 73, 211, 582
CviAII CATG 5 cut(s) 266, 276, 376, 423, 458
CviJI RGCY 5 cut(s) 32, 145, 178, 353, 476
CviKI_1 RGCY 5 cut(s) 32, 145, 178, 353, 476
CviQI GTAC 3 cut(s) 73, 211, 582
DdeI CTNAG 2 cut(s) 11, 171
DpnI GATC 2 cut(s) 191, 563
DpnII GATC 2 cut(s) 189, 561
Eam1104I CTCTTC 1 cut(s) 474
EarI CTCTTC 1 cut(s) 474
Eco57I CTGAAG 3 cut(s) 158, 455, 677
EcoT22I ATGCAT 1 cut(s) 317
FaeI CATG 5 cut(s) 269, 279, 379, 426, 461
FatI CATG 5 cut(s) 265, 275, 375, 422, 457
FblI GTMKAC 1 cut(s) 406
Fnu4HI GCNGC 3 cut(s) 115, 384, 387
FokI GGATG 3 cut(s) 133, 170, 354
Fsp4HI GCNGC 3 cut(s) 115, 384, 387
FspBI CTAG 2 cut(s) 707, 715
FspI TGCGCA 1 cut(s) 203
GlaI GCGC 1 cut(s) 203
GluI GCNGC 3 cut(s) 115, 384, 387
GsuI CTGGAG 2 cut(s) 117, 624
HapII CCGG 1 cut(s) 390
HhaI GCGC 1 cut(s) 204
Hin1II CATG 5 cut(s) 269, 279, 379, 426, 461
Hin6I GCGC 1 cut(s) 202
HinP1I GCGC 1 cut(s) 202
HincII GTYRAC 1 cut(s) 407
HindII GTYRAC 1 cut(s) 407
HinfI GANTC 4 cut(s) 26, 99, 325, 566
HpaII CCGG 1 cut(s) 390
Hpy166II GTNNAC 3 cut(s) 407, 584, 703
Hpy188I TCNGA 4 cut(s) 130, 157, 235, 657
Hpy188III TCNNGA 4 cut(s) 35, 148, 284, 574
Hpy8I GTNNAC 3 cut(s) 407, 584, 703
Hpy99I CGWCG 3 cut(s) 325, 408, 490
HpyAV CCTTC 1 cut(s) 98
HpyCH4III ACNGT 2 cut(s) 72, 86
HpyCH4IV ACGT 1 cut(s) 650
HpyCH4V TGCA 3 cut(s) 117, 275, 315
HpyF10VI GCNNNNNNNGC 2 cut(s) 184, 473
HpyF3I CTNAG 2 cut(s) 11, 171
HpySE526I ACGT 1 cut(s) 650
Hsp92II CATG 5 cut(s) 269, 279, 379, 426, 461
HspAI GCGC 1 cut(s) 202
Kzo9I GATC 2 cut(s) 189, 561
LguI GCTCTTC 1 cut(s) 474
LmnI GCTCC 3 cut(s) 262, 350, 525
Lsp1109I GCAGC 2 cut(s) 101, 373
MaeI CTAG 2 cut(s) 707, 715
MaeII ACGT 1 cut(s) 650
MaeIII GTNAC 1 cut(s) 505
MalI GATC 2 cut(s) 191, 563
MboI GATC 2 cut(s) 189, 561
MboII GAAGA 6 cut(s) 151, 458, 461, 461, 503, 637
MflI RGATCY 1 cut(s) 189
MhlI GDGCHC 2 cut(s) 283, 469
MluCI AATT 5 cut(s) 47, 229, 594, 613, 663
MlyI GAGTC 3 cut(s) 35, 108, 319
MnlI CCTC 5 cut(s) 163, 168, 436, 508, 570
Mph1103I ATGCAT 1 cut(s) 317
MroXI GAANNNNTTC 1 cut(s) 651
MseI TTAA 3 cut(s) 531, 597, 633
MslI CAYNNNNRTG 2 cut(s) 378, 462
MspA1I CMGCKG 1 cut(s) 386
MspI CCGG 1 cut(s) 390
MvnI CGCG 1 cut(s) 620
MwoI GCNNNNNNNGC 2 cut(s) 184, 473
NdeII GATC 2 cut(s) 189, 561
NlaIII CATG 5 cut(s) 269, 279, 379, 426, 461
NlaIV GGNNCC 1 cut(s) 382
NsbI TGCGCA 1 cut(s) 203
NsiI ATGCAT 1 cut(s) 317
NspI RCATGY 2 cut(s) 279, 426
OliI CACNNNNGTG 1 cut(s) 378
PciSI GCTCTTC 1 cut(s) 474
PdmI GAANNNNTTC 1 cut(s) 651
PfeI GAWTC 1 cut(s) 566
PkrI GCNGC 3 cut(s) 116, 385, 388
PleI GAGTC 3 cut(s) 34, 107, 319
PpsI GAGTC 3 cut(s) 34, 107, 319
Psp1406I AACGTT 1 cut(s) 650
PspN4I GGNNCC 1 cut(s) 382
PstI CTGCAG 1 cut(s) 119
PsuI RGATCY 1 cut(s) 189
RsaI GTAC 3 cut(s) 74, 212, 583
RsaNI GTAC 3 cut(s) 73, 211, 582
RseI CAYNNNNRTG 2 cut(s) 378, 462
SalI GTCGAC 1 cut(s) 405
SapI GCTCTTC 1 cut(s) 474
SaqAI TTAA 3 cut(s) 531, 597, 633
SatI GCNGC 3 cut(s) 115, 384, 387
Sau3AI GATC 2 cut(s) 189, 561
ScaI AGTACT 1 cut(s) 74
SchI GAGTC 3 cut(s) 35, 108, 319
SduI GDGCHC 2 cut(s) 283, 469
SetI ASST 8 cut(s) 34, 147, 155, 355, 552, 591, 653, 708
SfcI CTRYAG 1 cut(s) 115
SmiMI CAYNNNNRTG 2 cut(s) 378, 462
SmlI CTYRAG 3 cut(s) 146, 182, 574
SmoI CTYRAG 3 cut(s) 146, 182, 574
Sse9I AATT 5 cut(s) 47, 229, 594, 613, 663
SsiI CCGC 1 cut(s) 384
SspMI CTAG 2 cut(s) 707, 715
TaaI ACNGT 2 cut(s) 72, 86
TaiI ACGT 1 cut(s) 653
TaqI TCGA 4 cut(s) 102, 406, 485, 564
TasI AATT 5 cut(s) 47, 229, 594, 613, 663
TatI WGTACW 2 cut(s) 72, 581
TauI GCSGC 1 cut(s) 386
TfiI GAWTC 1 cut(s) 566
Tru1I TTAA 3 cut(s) 531, 597, 633
Tru9I TTAA 3 cut(s) 531, 597, 633
TscAI CASTG 1 cut(s) 607
TseI GCWGC 2 cut(s) 114, 386
TspDTI ATGAA 4 cut(s) 10, 282, 474, 638
TspGWI ACGGA 2 cut(s) 275, 503
TspRI CASTG 1 cut(s) 607
XapI RAATTY 2 cut(s) 47, 229
XceI RCATGY 2 cut(s) 279, 426
XcmI CCANNNNNNNNNTGG 1 cut(s) 517
XmiI GTMKAC 1 cut(s) 406
XmnI GAANNNNTTC 1 cut(s) 651
XspI CTAG 2 cut(s) 707, 715
ZrmI AGTACT 1 cut(s) 74
Zsp2I ATGCAT 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.