Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0017240

Physical Location & Seq

Genomic Coordinates Forward (+)

12823555 .. 12833038

Gene Structure 9484 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG111700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCGACACCATCCGCAACAATTCACATTCAAAGGAACAAGCTACGCATCAAACGTCGCTGCAGGATGATTTTGGAGAAACTGGAGAAGCTCAAGACCTCTGATGACCATTCTGCTGAGAGGCTGCTCATACAGATCGAATCTATGCGCAAGGAGTATGAAAATACGCTCAAAAAGTCTGAACTTGTGAAGGAAGAGATTGAGAAGGAGCATGAACGTGCAACTGCTCTGGAAGAAGGCAAAACAAATAAATGCACTGCGACGACTTTGCTCATTTTCGGCACGCTGGCAGCTACTATGGTTGGTCATCCACACATGGGTGCCGCTGCTGCTATGGTTGTTCATCGACAAGATTCTAAAGCCTGTAGCTCACGAACAAAAGAGGAAGAAGAAAGACATGAAAGTGCTCTTCAGGCTCACTACTTAATGGAAGGAGAGATCTATGATTGTAAACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

17.43

Weight (kDa)

7.75

Isoelectric Point (pI)

60.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017240)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08060
rosa_laevigata	RLG00000014402 RLG00000014413 RLG00000014417
rosa_multiflora	Rmu_sc0000596.1_g000019 Rmu_sc0007280.1_g000003
rosa_roxburghii	Rroxscaffold_7G00205060 Rroxscaffold_7G00205160
rosa_rugosa	Rorug05G0598200
rosa_samantha	Rh6AG119400 Rh6BG113500 Rh6CG111700 Rh6DG101400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	149
AccB1I	GGYRCC	1 cut(s)	320
AciI	CCGC	2 cut(s)	15, 324
AcuI	CTGAAG	1 cut(s)	395
AfiI	CCNNNNNNNGG	1 cut(s)	317
AgsI	TTSAA	1 cut(s)	32
AleI	CACNNNNGTG	1 cut(s)	318
AluBI	AGCT	4 cut(s)	43, 91, 293, 369
AluI	AGCT	4 cut(s)	43, 91, 293, 369
Alw21I	GWGCWC	1 cut(s)	409
ApeKI	GCWGC	5 cut(s)	60, 124, 290, 326, 329
AspLEI	GCGC	1 cut(s)	150
BanI	GGYRCC	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	409
BbvI	GCAGC	5 cut(s)	47, 111, 302, 313, 316
BccI	CCATC	1 cut(s)	19
BcgI	CGANNNNNNTGC	2 cut(s)	250, 284
BfmI	CTRYAG	2 cut(s)	61, 364
BglII	AGATCT	1 cut(s)	438
BisI	GCNGC	6 cut(s)	61, 125, 291, 324, 327, 330
BlsI	GCNGC	6 cut(s)	62, 126, 292, 325, 328, 331
BmiI	GGNNCC	1 cut(s)	322
BmsI	GCATC	1 cut(s)	57
BpmI	CTGGAG	1 cut(s)	104
BpuEI	CTTGAG	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	317
Bse1I	ACTGG	1 cut(s)	87
BseGI	GGATG	3 cut(s)	11, 72, 307
BseLI	CCNNNNNNNGG	1 cut(s)	317
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	1 cut(s)	87
BseXI	GCAGC	5 cut(s)	47, 111, 302, 313, 316
BshNI	GGYRCC	1 cut(s)	320
BsiHKAI	GWGCWC	1 cut(s)	409
BslI	CCNNNNNNNGG	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	409
Bsp143I	GATC	2 cut(s)	135, 438
BspACI	CCGC	2 cut(s)	15, 324
BspCNI	CTCAG	1 cut(s)	109
BspLI	GGNNCC	1 cut(s)	322
BspMAI	CTGCAG	1 cut(s)	65
BspQI	GCTCTTC	1 cut(s)	414
BspT107I	GGYRCC	1 cut(s)	320
BsrI	ACTGG	1 cut(s)	87
BssMI	GATC	2 cut(s)	135, 438
Bst6I	CTCTTC	2 cut(s)	189, 414
BstC8I	GCNNGC	2 cut(s)	284, 288
BstDEI	CTNAG	1 cut(s)	117
BstF5I	GGATG	3 cut(s)	11, 72, 307
BstHHI	GCGC	1 cut(s)	150
BstKTI	GATC	2 cut(s)	138, 441
BstMBI	GATC	2 cut(s)	135, 438
BstMWI	GCNNNNNNNGC	2 cut(s)	329, 413
BstSFI	CTRYAG	2 cut(s)	61, 364
BstV1I	GCAGC	5 cut(s)	47, 111, 302, 313, 316
BstX2I	RGATCY	1 cut(s)	438
BstYI	RGATCY	1 cut(s)	438
BtsCI	GGATG	3 cut(s)	11, 72, 307
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	1 cut(s)	255
Cac8I	GCNNGC	2 cut(s)	284, 288
CfoI	GCGC	1 cut(s)	150
CviAII	CATG	3 cut(s)	212, 316, 398
CviJI	RGCY	7 cut(s)	43, 91, 124, 293, 362, 369, 416
CviKI_1	RGCY	7 cut(s)	43, 91, 124, 293, 362, 369, 416
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	2 cut(s)	137, 440
DpnII	GATC	2 cut(s)	135, 438
Eam1104I	CTCTTC	2 cut(s)	189, 414
EarI	CTCTTC	2 cut(s)	189, 414
Eco57I	CTGAAG	1 cut(s)	395
FaeI	CATG	3 cut(s)	215, 319, 401
FaiI	YATR	9 cut(s)	131, 146, 159, 213, 299, 317, 335, 399, 444
FatI	CATG	3 cut(s)	211, 315, 397
Fnu4HI	GCNGC	6 cut(s)	61, 125, 291, 324, 327, 330
FokI	GGATG	2 cut(s)	79, 294
Fsp4HI	GCNGC	6 cut(s)	61, 125, 291, 324, 327, 330
FspI	TGCGCA	1 cut(s)	149
GlaI	GCGC	1 cut(s)	149
GluI	GCNGC	6 cut(s)	61, 125, 291, 324, 327, 330
GsuI	CTGGAG	1 cut(s)	104
HhaI	GCGC	1 cut(s)	150
Hin1II	CATG	3 cut(s)	215, 319, 401
Hin6I	GCGC	1 cut(s)	148
HinP1I	GCGC	1 cut(s)	148
HinfI	GANTC	2 cut(s)	140, 353
Hpy166II	GTNNAC	1 cut(s)	452
Hpy188I	TCNGA	2 cut(s)	103, 181
Hpy188III	TCNNGA	3 cut(s)	94, 230, 372
Hpy8I	GTNNAC	1 cut(s)	452
Hpy99I	CGWCG	2 cut(s)	60, 265
HpyAV	CCTTC	4 cut(s)	184, 199, 230, 425
HpyCH4IV	ACGT	2 cut(s)	55, 217
HpyCH4V	TGCA	3 cut(s)	63, 221, 255
HpyF10VI	GCNNNNNNNGC	2 cut(s)	329, 413
HpyF3I	CTNAG	1 cut(s)	117
HpySE526I	ACGT	2 cut(s)	55, 217
Hsp92II	CATG	3 cut(s)	215, 319, 401
HspAI	GCGC	1 cut(s)	148
Kzo9I	GATC	2 cut(s)	135, 438
LguI	GCTCTTC	1 cut(s)	414
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	6 cut(s)	49, 68, 215, 272, 376, 398
Lsp1109I	GCAGC	5 cut(s)	47, 111, 302, 313, 316
LweI	GCATC	1 cut(s)	57
MaeII	ACGT	2 cut(s)	55, 217
MalI	GATC	2 cut(s)	137, 440
MboI	GATC	2 cut(s)	135, 438
MboII	GAAGA	5 cut(s)	206, 245, 398, 401, 401
MflI	RGATCY	1 cut(s)	438
MhlI	GDGCHC	1 cut(s)	409
MluCI	AATT	1 cut(s)	21
MnlI	CCTC	3 cut(s)	109, 114, 376
MseI	TTAA	2 cut(s)	425, 457
MslI	CAYNNNNRTG	3 cut(s)	216, 318, 402
MspA1I	CMGCKG	1 cut(s)	326
MwoI	GCNNNNNNNGC	2 cut(s)	329, 413
NdeII	GATC	2 cut(s)	135, 438
NlaIII	CATG	3 cut(s)	215, 319, 401
NlaIV	GGNNCC	1 cut(s)	322
NsbI	TGCGCA	1 cut(s)	149
OliI	CACNNNNGTG	1 cut(s)	318
PciSI	GCTCTTC	1 cut(s)	414
PcsI	WCGNNNNNNNCGW	1 cut(s)	52
PfeI	GAWTC	2 cut(s)	140, 353
PkrI	GCNGC	6 cut(s)	62, 126, 292, 325, 328, 331
PspN4I	GGNNCC	1 cut(s)	322
PstI	CTGCAG	1 cut(s)	65
PsuI	RGATCY	1 cut(s)	438
RseI	CAYNNNNRTG	3 cut(s)	216, 318, 402
SapI	GCTCTTC	1 cut(s)	414
SaqAI	TTAA	2 cut(s)	425, 457
SatI	GCNGC	6 cut(s)	61, 125, 291, 324, 327, 330
Sau3AI	GATC	2 cut(s)	135, 438
SduI	GDGCHC	1 cut(s)	409
SetI	ASST	7 cut(s)	45, 58, 93, 101, 220, 295, 371
SfaNI	GCATC	1 cut(s)	57
SfcI	CTRYAG	2 cut(s)	61, 364
SmiMI	CAYNNNNRTG	3 cut(s)	216, 318, 402
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	1 cut(s)	21
SsiI	CCGC	2 cut(s)	15, 324
TaiI	ACGT	2 cut(s)	58, 220
TaqI	TCGA	2 cut(s)	138, 346
TasI	AATT	1 cut(s)	21
TauI	GCSGC	1 cut(s)	326
TfiI	GAWTC	2 cut(s)	140, 353
Tru1I	TTAA	2 cut(s)	425, 457
Tru9I	TTAA	2 cut(s)	425, 457
TscAI	CASTG	1 cut(s)	262
TseI	GCWGC	5 cut(s)	60, 124, 290, 326, 329
TspDTI	ATGAA	4 cut(s)	174, 228, 332, 414
TspRI	CASTG	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.