RLG00000014413

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0017240
Physical Location & Seq
Reverse (-)
52878405 .. 52880189
1785 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014413

Sequence Viewer

Length: 645 bp
ATGTGTAGTTGGATAGTTTCAAGCAGACAAATTAGTCTTCCTCAGATTTGGCACGCCAGAGAAATTAGCCAAAAGGACCGATGGGGTTTGGTCACGGTAAATGGGAAATCGTCGGCCGTCGAAGAGGAGAAGGCCTTTGAAAAGACAAAATCCTTAGCTCGTGAAAGTTATAAATTTATTCAATCTGCGGTGCAACAGTACTTTGACACCGGGCTGCGAACTGAAGTCGGAGGAAGTCGCTGCAGGATGATTTTGGAGAAACTGGAGAAGCTCAAGACCTCTGATGACCATTTTGCTGAGAGGCTGCTCATACAGATCGAATCTATGCGCAAGGAGTACGAAAATACGCTCAAAAAGTCTGAACTTGTGAAAAAAGAGATTGAGAAGGAGCATGAACGTGCAAGTGCTCTGGAAGAAGGCAAAACAAAGAAAAATAAACGCACTGCGACGACTTTGCTCATTTTCGGCATGCTGGCAGCTACTATGGTTGGTCATCCACACATGGGTGCCGCTGCTGCTATGGTTGTTCGTCGACAAGTTTCTAAAGCCTGTAGCTCAAGAACAAAAGAGGAAGAAGAAAGACATGAAAGTGCTCTTCCGGCTCACTACTTAATGGAAGGAGAGATCTATGATTGTAAACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

24.55

Weight (kDa)

8.94

Isoelectric Point (pI)

52.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF677 PF05055 47 - 193 1.3e-06 Protein of unknown function (DUF677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 171
AasI GACNNNNNNGTC 1 cut(s) 33
Acc16I TGCGCA 1 cut(s) 329
AccB1I GGYRCC 1 cut(s) 506
AccI GTMKAC 1 cut(s) 532
AciI CCGC 2 cut(s) 188, 510
AcoI YGGCCR 1 cut(s) 114
AcsI RAATTY 1 cut(s) 173
AcuI CTGAAG 1 cut(s) 243
AfaI GTAC 2 cut(s) 200, 338
AfiI CCNNNNNNNGG 1 cut(s) 503
AgsI TTSAA 3 cut(s) 21, 140, 182
AleI CACNNNNGTG 1 cut(s) 504
AluBI AGCT 4 cut(s) 158, 271, 479, 555
AluI AGCT 4 cut(s) 158, 271, 479, 555
Alw21I GWGCWC 2 cut(s) 409, 595
AoxI GGCC 2 cut(s) 114, 132
ApeKI GCWGC 6 cut(s) 214, 240, 304, 476, 512, 515
ApoI RAATTY 1 cut(s) 173
AspLEI GCGC 1 cut(s) 330
AspS9I GGNCC 1 cut(s) 76
AsuC2I CCSGG 1 cut(s) 211
AvaII GGWCC 1 cut(s) 76
BanI GGYRCC 1 cut(s) 506
BauI CACGAG 1 cut(s) 159
BbsI GAAGAC 1 cut(s) 29
Bbv12I GWGCWC 2 cut(s) 409, 595
BbvI GCAGC 6 cut(s) 201, 227, 291, 488, 499, 502
BccI CCATC 1 cut(s) 75
BceAI ACGGC 1 cut(s) 101
BcgI CGANNNNNNTGC 2 cut(s) 436, 470
BcnI CCSGG 1 cut(s) 211
BfmI CTRYAG 2 cut(s) 241, 550
BglII AGATCT 1 cut(s) 624
BisI GCNGC 7 cut(s) 215, 241, 305, 477, 510, 513, 516
BlsI GCNGC 7 cut(s) 216, 242, 306, 478, 511, 514, 517
BmcAI AGTACT 1 cut(s) 200
Bme1390I CCNGG 1 cut(s) 211
Bme18I GGWCC 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 76
BmiI GGNNCC 1 cut(s) 508
BmrFI CCNGG 1 cut(s) 211
BpiI GAAGAC 1 cut(s) 29
BpmI CTGGAG 1 cut(s) 284
Bpu10I CCTNAGC 1 cut(s) 154
BpuEI CTTGAG 2 cut(s) 257, 541
BpuMI CCSGG 1 cut(s) 211
Bsc4I CCNNNNNNNGG 1 cut(s) 503
Bse1I ACTGG 1 cut(s) 267
BseGI GGATG 2 cut(s) 252, 493
BseLI CCNNNNNNNGG 1 cut(s) 503
BseMII CTCAG 2 cut(s) 56, 288
BseNI ACTGG 1 cut(s) 267
BseRI GAGGAG 1 cut(s) 140
BseX3I CGGCCG 1 cut(s) 114
BseXI GCAGC 6 cut(s) 201, 227, 291, 488, 499, 502
Bsh1285I CGRYCG 1 cut(s) 117
BshFI GGCC 2 cut(s) 116, 134
BshNI GGYRCC 1 cut(s) 506
BsiEI CGRYCG 1 cut(s) 117
BsiHKAI GWGCWC 2 cut(s) 409, 595
BsiSI CCGG 2 cut(s) 210, 599
BslI CCNNNNNNNGG 1 cut(s) 503
BsnI GGCC 2 cut(s) 116, 134
Bsp1286I GDGCHC 2 cut(s) 409, 595
Bsp143I GATC 2 cut(s) 315, 624
BspACI CCGC 2 cut(s) 188, 510
BspANI GGCC 2 cut(s) 116, 134
BspCNI CTCAG 2 cut(s) 55, 289
BspLI GGNNCC 1 cut(s) 508
BspMAI CTGCAG 1 cut(s) 245
BspQI GCTCTTC 1 cut(s) 600
BspT107I GGYRCC 1 cut(s) 506
BsrI ACTGG 1 cut(s) 267
BssMI GATC 2 cut(s) 315, 624
BssSI CACGAG 1 cut(s) 159
Bst2BI CACGAG 1 cut(s) 159
Bst4CI ACNGT 2 cut(s) 97, 198
Bst6I CTCTTC 2 cut(s) 117, 600
BstC8I GCNNGC 3 cut(s) 54, 470, 474
BstDEI CTNAG 3 cut(s) 42, 154, 297
BstF5I GGATG 2 cut(s) 252, 493
BstHHI GCGC 1 cut(s) 330
BstKTI GATC 2 cut(s) 318, 627
BstMBI GATC 2 cut(s) 315, 624
BstMCI CGRYCG 1 cut(s) 117
BstMWI GCNNNNNNNGC 2 cut(s) 515, 599
BstNSI RCATGY 1 cut(s) 472
BstSCI CCNGG 1 cut(s) 209
BstSFI CTRYAG 2 cut(s) 241, 550
BstV1I GCAGC 6 cut(s) 201, 227, 291, 488, 499, 502
BstV2I GAAGAC 1 cut(s) 29
BstX2I RGATCY 1 cut(s) 624
BstYI RGATCY 1 cut(s) 624
BstZI CGGCCG 1 cut(s) 114
BsuRI GGCC 2 cut(s) 116, 134
BtsCI GGATG 2 cut(s) 252, 493
BtsI GCAGTG 1 cut(s) 441
BtsIMutI CAGTG 1 cut(s) 441
Cac8I GCNNGC 3 cut(s) 54, 470, 474
CfoI GCGC 1 cut(s) 330
Cfr13I GGNCC 1 cut(s) 76
Csp6I GTAC 2 cut(s) 199, 337
CviAII CATG 4 cut(s) 392, 469, 502, 584
CviQI GTAC 2 cut(s) 199, 337
DdeI CTNAG 3 cut(s) 42, 154, 297
DpnI GATC 2 cut(s) 317, 626
DpnII GATC 2 cut(s) 315, 624
DrdI GACNNNNNNGTC 1 cut(s) 33
DseDI GACNNNNNNGTC 1 cut(s) 33
EaeI YGGCCR 1 cut(s) 114
EagI CGGCCG 1 cut(s) 114
Eam1104I CTCTTC 2 cut(s) 117, 600
EarI CTCTTC 2 cut(s) 117, 600
EclXI CGGCCG 1 cut(s) 114
Eco147I AGGCCT 1 cut(s) 134
Eco47I GGWCC 1 cut(s) 76
Eco52I CGGCCG 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 243
FaeI CATG 4 cut(s) 395, 472, 505, 587
FatI CATG 4 cut(s) 391, 468, 501, 583
FblI GTMKAC 1 cut(s) 532
Fnu4HI GCNGC 7 cut(s) 215, 241, 305, 477, 510, 513, 516
FokI GGATG 2 cut(s) 259, 480
Fsp4HI GCNGC 7 cut(s) 215, 241, 305, 477, 510, 513, 516
FspI TGCGCA 1 cut(s) 329
GlaI GCGC 1 cut(s) 329
GluI GCNGC 7 cut(s) 215, 241, 305, 477, 510, 513, 516
GsuI CTGGAG 1 cut(s) 284
HaeIII GGCC 2 cut(s) 116, 134
HapII CCGG 2 cut(s) 210, 599
HhaI GCGC 1 cut(s) 330
Hin1II CATG 4 cut(s) 395, 472, 505, 587
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HincII GTYRAC 1 cut(s) 533
HindII GTYRAC 1 cut(s) 533
HinfI GANTC 1 cut(s) 320
HpaII CCGG 2 cut(s) 210, 599
Hpy166II GTNNAC 2 cut(s) 533, 638
Hpy188I TCNGA 4 cut(s) 45, 230, 283, 361
Hpy188III TCNNGA 4 cut(s) 161, 274, 410, 558
Hpy8I GTNNAC 2 cut(s) 533, 638
Hpy99I CGWCG 4 cut(s) 115, 122, 451, 534
HpyAV CCTTC 4 cut(s) 124, 379, 410, 611
HpyCH4III ACNGT 2 cut(s) 97, 198
HpyCH4IV ACGT 1 cut(s) 397
HpyCH4V TGCA 3 cut(s) 193, 243, 401
HpyF10VI GCNNNNNNNGC 2 cut(s) 515, 599
HpyF3I CTNAG 3 cut(s) 42, 154, 297
HpySE526I ACGT 1 cut(s) 397
Hsp92II CATG 4 cut(s) 395, 472, 505, 587
HspAI GCGC 1 cut(s) 328
Kzo9I GATC 2 cut(s) 315, 624
LguI GCTCTTC 1 cut(s) 600
LmnI GCTCC 1 cut(s) 388
LpnPI CCDG 8 cut(s) 70, 223, 229, 248, 395, 458, 562, 612
Lsp1109I GCAGC 6 cut(s) 201, 227, 291, 488, 499, 502
MaeII ACGT 1 cut(s) 397
MaeIII GTNAC 1 cut(s) 91
MalI GATC 2 cut(s) 317, 626
MboI GATC 2 cut(s) 315, 624
MboII GAAGA 6 cut(s) 29, 134, 425, 584, 587, 587
MflI RGATCY 1 cut(s) 624
MhlI GDGCHC 2 cut(s) 409, 595
MluCI AATT 3 cut(s) 30, 63, 173
MmeI TCCRAC 1 cut(s) 208
MnlI CCTC 6 cut(s) 51, 118, 224, 289, 294, 562
MseI TTAA 2 cut(s) 611, 643
MslI CAYNNNNRTG 3 cut(s) 396, 504, 588
MspA1I CMGCKG 1 cut(s) 512
MspI CCGG 2 cut(s) 210, 599
MspR9I CCNGG 1 cut(s) 211
MwoI GCNNNNNNNGC 2 cut(s) 515, 599
NciI CCSGG 1 cut(s) 211
NdeII GATC 2 cut(s) 315, 624
NlaIII CATG 4 cut(s) 395, 472, 505, 587
NlaIV GGNNCC 1 cut(s) 508
NmuCI GTSAC 1 cut(s) 91
NsbI TGCGCA 1 cut(s) 329
NspI RCATGY 1 cut(s) 472
OliI CACNNNNGTG 1 cut(s) 504
PaeI GCATGC 1 cut(s) 472
PceI AGGCCT 1 cut(s) 134
PciSI GCTCTTC 1 cut(s) 600
PfeI GAWTC 1 cut(s) 320
PkrI GCNGC 7 cut(s) 216, 242, 306, 478, 511, 514, 517
PsiI TTATAA 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 508
PspPI GGNCC 1 cut(s) 76
PstI CTGCAG 1 cut(s) 245
PsuI RGATCY 1 cut(s) 624
RsaI GTAC 2 cut(s) 200, 338
RsaNI GTAC 2 cut(s) 199, 337
RseI CAYNNNNRTG 3 cut(s) 396, 504, 588
SalI GTCGAC 1 cut(s) 531
SapI GCTCTTC 1 cut(s) 600
SaqAI TTAA 2 cut(s) 611, 643
SatI GCNGC 7 cut(s) 215, 241, 305, 477, 510, 513, 516
Sau3AI GATC 2 cut(s) 315, 624
Sau96I GGNCC 1 cut(s) 76
ScaI AGTACT 1 cut(s) 200
ScrFI CCNGG 1 cut(s) 211
SduI GDGCHC 2 cut(s) 409, 595
SetI ASST 6 cut(s) 160, 273, 281, 400, 481, 557
SfcI CTRYAG 2 cut(s) 241, 550
SinI GGWCC 1 cut(s) 76
SmiMI CAYNNNNRTG 3 cut(s) 396, 504, 588
SmlI CTYRAG 2 cut(s) 272, 556
SmoI CTYRAG 2 cut(s) 272, 556
SphI GCATGC 1 cut(s) 472
Sse9I AATT 3 cut(s) 30, 63, 173
SseBI AGGCCT 1 cut(s) 134
SsiI CCGC 2 cut(s) 188, 510
StuI AGGCCT 1 cut(s) 134
StyD4I CCNGG 1 cut(s) 209
TaaI ACNGT 2 cut(s) 97, 198
TaiI ACGT 1 cut(s) 400
TaqI TCGA 3 cut(s) 120, 318, 532
TaqII GACCGA 1 cut(s) 93
TasI AATT 3 cut(s) 30, 63, 173
TatI WGTACW 1 cut(s) 198
TauI GCSGC 1 cut(s) 512
TfiI GAWTC 1 cut(s) 320
Tru1I TTAA 2 cut(s) 611, 643
Tru9I TTAA 2 cut(s) 611, 643
TscAI CASTG 1 cut(s) 448
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 6 cut(s) 214, 240, 304, 476, 512, 515
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 2 cut(s) 408, 600
TspRI CASTG 1 cut(s) 448
VpaK11BI GGWCC 1 cut(s) 76
XapI RAATTY 1 cut(s) 173
XceI RCATGY 1 cut(s) 472
XmiI GTMKAC 1 cut(s) 532
ZrmI AGTACT 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.