Rh6DG101400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0017240
Physical Location & Seq
Forward (+)
12751446 .. 12751838
393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG101400.1

Sequence Viewer

Length: 393 bp
ATGATTTTGGAGAAACTGGAGAAGCTCAAGACCTCTGATGACCATTCTGCTGAGAGGCTGCTCATACAGATCGAATCTATGCGCAAGGAGTATGAAAATACGCTCAAAAAGTCTGAACTTGTGAAGGAAGAGATTGAGAAGGAGCATGAACGTGCAACTGCTCTGGAAGAAGGCAAAACAAATAAATGCACTGCGACGACTTTGCTCATTTTCGGCACGCTGGCAGCTACTATGGTTGGTCATCCACACATGGGTGCCGCTGCTGCTATGGTTGTTCATCGACAAGATTCTAAAGCCTGTAGCTCACGAACAAAAGAGGAAGAAGAAAGACATGAAAGTGCTCTTCAGGCTCACTACTTAATGGAAGGAGAGATCTATGATTGTAAACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.8

Weight (kDa)

5.76

Isoelectric Point (pI)

51.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 83
AccB1I GGYRCC 1 cut(s) 254
AciI CCGC 1 cut(s) 258
AcuI CTGAAG 1 cut(s) 329
AfiI CCNNNNNNNGG 1 cut(s) 251
AleI CACNNNNGTG 1 cut(s) 252
AluBI AGCT 3 cut(s) 25, 227, 303
AluI AGCT 3 cut(s) 25, 227, 303
Alw21I GWGCWC 1 cut(s) 343
ApeKI GCWGC 4 cut(s) 58, 224, 260, 263
AspLEI GCGC 1 cut(s) 84
BanI GGYRCC 1 cut(s) 254
Bbv12I GWGCWC 1 cut(s) 343
BbvI GCAGC 4 cut(s) 45, 236, 247, 250
BcgI CGANNNNNNTGC 2 cut(s) 184, 218
BfmI CTRYAG 1 cut(s) 298
BglII AGATCT 1 cut(s) 372
BisI GCNGC 5 cut(s) 59, 225, 258, 261, 264
BlsI GCNGC 5 cut(s) 60, 226, 259, 262, 265
BmiI GGNNCC 1 cut(s) 256
BpmI CTGGAG 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 11
Bsc4I CCNNNNNNNGG 1 cut(s) 251
Bse1I ACTGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 241
BseLI CCNNNNNNNGG 1 cut(s) 251
BseMII CTCAG 1 cut(s) 42
BseNI ACTGG 1 cut(s) 21
BseXI GCAGC 4 cut(s) 45, 236, 247, 250
BshNI GGYRCC 1 cut(s) 254
BsiHKAI GWGCWC 1 cut(s) 343
BslI CCNNNNNNNGG 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 343
Bsp143I GATC 2 cut(s) 69, 372
BspACI CCGC 1 cut(s) 258
BspCNI CTCAG 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 256
BspQI GCTCTTC 1 cut(s) 348
BspT107I GGYRCC 1 cut(s) 254
BsrI ACTGG 1 cut(s) 21
BssMI GATC 2 cut(s) 69, 372
Bst6I CTCTTC 2 cut(s) 123, 348
BstC8I GCNNGC 2 cut(s) 218, 222
BstDEI CTNAG 1 cut(s) 51
BstF5I GGATG 1 cut(s) 241
BstHHI GCGC 1 cut(s) 84
BstKTI GATC 2 cut(s) 72, 375
BstMBI GATC 2 cut(s) 69, 372
BstMWI GCNNNNNNNGC 2 cut(s) 263, 347
BstSFI CTRYAG 1 cut(s) 298
BstV1I GCAGC 4 cut(s) 45, 236, 247, 250
BstX2I RGATCY 1 cut(s) 372
BstYI RGATCY 1 cut(s) 372
BtsCI GGATG 1 cut(s) 241
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 1 cut(s) 189
Cac8I GCNNGC 2 cut(s) 218, 222
CfoI GCGC 1 cut(s) 84
CviAII CATG 3 cut(s) 146, 250, 332
CviJI RGCY 6 cut(s) 25, 58, 227, 296, 303, 350
CviKI_1 RGCY 6 cut(s) 25, 58, 227, 296, 303, 350
DdeI CTNAG 1 cut(s) 51
DpnI GATC 2 cut(s) 71, 374
DpnII GATC 2 cut(s) 69, 372
Eam1104I CTCTTC 2 cut(s) 123, 348
EarI CTCTTC 2 cut(s) 123, 348
Eco57I CTGAAG 1 cut(s) 329
FaeI CATG 3 cut(s) 149, 253, 335
FaiI YATR 9 cut(s) 65, 80, 93, 147, 233, 251, 269, 333, 378
FatI CATG 3 cut(s) 145, 249, 331
Fnu4HI GCNGC 5 cut(s) 59, 225, 258, 261, 264
FokI GGATG 1 cut(s) 228
Fsp4HI GCNGC 5 cut(s) 59, 225, 258, 261, 264
FspI TGCGCA 1 cut(s) 83
GlaI GCGC 1 cut(s) 83
GluI GCNGC 5 cut(s) 59, 225, 258, 261, 264
GsuI CTGGAG 1 cut(s) 38
HhaI GCGC 1 cut(s) 84
Hin1II CATG 3 cut(s) 149, 253, 335
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HinfI GANTC 2 cut(s) 74, 287
Hpy166II GTNNAC 1 cut(s) 386
Hpy188I TCNGA 2 cut(s) 37, 115
Hpy188III TCNNGA 3 cut(s) 28, 164, 306
Hpy8I GTNNAC 1 cut(s) 386
Hpy99I CGWCG 1 cut(s) 199
HpyAV CCTTC 4 cut(s) 118, 133, 164, 359
HpyCH4IV ACGT 1 cut(s) 151
HpyCH4V TGCA 2 cut(s) 155, 189
HpyF10VI GCNNNNNNNGC 2 cut(s) 263, 347
HpyF3I CTNAG 1 cut(s) 51
HpySE526I ACGT 1 cut(s) 151
Hsp92II CATG 3 cut(s) 149, 253, 335
HspAI GCGC 1 cut(s) 82
Kzo9I GATC 2 cut(s) 69, 372
LguI GCTCTTC 1 cut(s) 348
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 5 cut(s) 2, 149, 206, 310, 332
Lsp1109I GCAGC 4 cut(s) 45, 236, 247, 250
MaeII ACGT 1 cut(s) 151
MalI GATC 2 cut(s) 71, 374
MboI GATC 2 cut(s) 69, 372
MboII GAAGA 5 cut(s) 140, 179, 332, 335, 335
MflI RGATCY 1 cut(s) 372
MhlI GDGCHC 1 cut(s) 343
MnlI CCTC 3 cut(s) 43, 48, 310
MseI TTAA 2 cut(s) 359, 391
MslI CAYNNNNRTG 3 cut(s) 150, 252, 336
MspA1I CMGCKG 1 cut(s) 260
MwoI GCNNNNNNNGC 2 cut(s) 263, 347
NdeII GATC 2 cut(s) 69, 372
NlaIII CATG 3 cut(s) 149, 253, 335
NlaIV GGNNCC 1 cut(s) 256
NsbI TGCGCA 1 cut(s) 83
OliI CACNNNNGTG 1 cut(s) 252
PciSI GCTCTTC 1 cut(s) 348
PfeI GAWTC 2 cut(s) 74, 287
PkrI GCNGC 5 cut(s) 60, 226, 259, 262, 265
PspN4I GGNNCC 1 cut(s) 256
PsuI RGATCY 1 cut(s) 372
RseI CAYNNNNRTG 3 cut(s) 150, 252, 336
SapI GCTCTTC 1 cut(s) 348
SaqAI TTAA 2 cut(s) 359, 391
SatI GCNGC 5 cut(s) 59, 225, 258, 261, 264
Sau3AI GATC 2 cut(s) 69, 372
SduI GDGCHC 1 cut(s) 343
SetI ASST 5 cut(s) 27, 35, 154, 229, 305
SfcI CTRYAG 1 cut(s) 298
SmiMI CAYNNNNRTG 3 cut(s) 150, 252, 336
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
SsiI CCGC 1 cut(s) 258
TaiI ACGT 1 cut(s) 154
TaqI TCGA 2 cut(s) 72, 280
TauI GCSGC 1 cut(s) 260
TfiI GAWTC 2 cut(s) 74, 287
Tru1I TTAA 2 cut(s) 359, 391
Tru9I TTAA 2 cut(s) 359, 391
TscAI CASTG 1 cut(s) 196
TseI GCWGC 4 cut(s) 58, 224, 260, 263
TspDTI ATGAA 4 cut(s) 108, 162, 266, 348
TspRI CASTG 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.