transcription, DNA-templated
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G35660 |
| fragaria_vesca | FvH4_2g11773 |
| malus_domestica | MD05G1041500.v1.1 MD10G1047900.v1.1 |
| prunus_persica | Prupe.8G057200_v2.0.a1 Prupe.8G057200_v2.0.a1 Prupe.8G057200_v2.0.a1 |
| pyrus_communis | pycom05g03420 pycom10g03390 |
| rosa_chinensis | RchiOBHm_Chr6g0272031 |
| rosa_laevigata | RLG00000013708 |
| rosa_multiflora | Rmu_sc0023166.1_g000001 |
| rosa_roxburghii | Rroxscaffold_173G00434950 Rroxscaffold_7G00196840 |
| rosa_rugosa | Rorug06G0065000 |
| rosa_samantha | Rh6AG182500 Rh6BG184700 Rh6CG183600 Rh6DG175200 |
| rosa_wichuraiana | Rw6G015700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 1679, 3947 |
| Acc36I | ACCTGC | 3 cut(s) | 810, 1679, 3947 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 683, 2361, 3903 |
| AccBSI | CCGCTC | 1 cut(s) | 122 |
| AccI | GTMKAC | 3 cut(s) | 309, 2756, 3879 |
| AccII | CGCG | 1 cut(s) | 19 |
| AclWI | GGATC | 2 cut(s) | 1097, 2173 |
| AcoI | YGGCCR | 2 cut(s) | 415, 930 |
| AcuI | CTGAAG | 4 cut(s) | 1067, 1330, 2433, 3626 |
| AcyI | GRCGYC | 1 cut(s) | 478 |
| AdeI | CACNNNGTG | 1 cut(s) | 4101 |
| AfaI | GTAC | 7 cut(s) | 1050, 1725, 2384, 2813, 3304, 3731, 3891 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 256, 300, 683, 2281, 2361, 2831, 3903 |
| AflII | CTTAAG | 2 cut(s) | 2495, 3140 |
| AhlI | ACTAGT | 2 cut(s) | 1934, 3413 |
| AjnI | CCWGG | 6 cut(s) | 604, 893, 1062, 1105, 1908, 2697 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1168, 1200 |
| Alw21I | GWGCWC | 4 cut(s) | 1291, 2300, 3762, 4067 |
| Alw26I | GTCTC | 4 cut(s) | 203, 2688, 3179, 3763 |
| Alw44I | GTGCAC | 1 cut(s) | 4063 |
| AlwI | GGATC | 2 cut(s) | 1097, 2173 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1721, 2220, 3681 |
| Ama87I | CYCGRG | 1 cut(s) | 861 |
| ApaLI | GTGCAC | 1 cut(s) | 4063 |
| ApeKI | GCWGC | 6 cut(s) | 787, 1826, 2512, 2553, 2858, 3230 |
| AseI | ATTAAT | 1 cut(s) | 3071 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1249, 1343, 2019, 2440 |
| AsuHPI | GGTGA | 7 cut(s) | 746, 1703, 1991, 2318, 2627, 3524, 3955 |
| AsuII | TTCGAA | 1 cut(s) | 532 |
| AsuNHI | GCTAGC | 1 cut(s) | 914 |
| AvaI | CYCGRG | 1 cut(s) | 861 |
| AvaII | GGWCC | 8 cut(s) | 958, 1601, 2038, 2352, 2606, 2822, 3408, 4104 |
| BaeGI | GKGCMC | 1 cut(s) | 4067 |
| BalI | TGGCCA | 2 cut(s) | 417, 932 |
| BanII | GRGCYC | 2 cut(s) | 2300, 3762 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1930, 1962 |
| BbsI | GAAGAC | 4 cut(s) | 690, 2217, 3103, 3399 |
| Bbv12I | GWGCWC | 4 cut(s) | 1291, 2300, 3762, 4067 |
| BbvCI | CCTCAGC | 1 cut(s) | 2175 |
| BbvI | GCAGC | 6 cut(s) | 774, 1813, 2524, 2565, 2870, 3242 |
| BccI | CCATC | 9 cut(s) | 95, 734, 922, 941, 1013, 1592, 1860, 3128, 3913 |
| BceAI | ACGGC | 2 cut(s) | 278, 386 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 272, 306, 512, 546 |
| BciT130I | CCWGG | 6 cut(s) | 606, 895, 1064, 1107, 1910, 2699 |
| BciVI | GTATCC | 1 cut(s) | 2282 |
| BclI | TGATCA | 2 cut(s) | 468, 3052 |
| BcoDI | GTCTC | 4 cut(s) | 203, 2688, 3179, 3763 |
| BcuI | ACTAGT | 2 cut(s) | 1934, 3413 |
| BfmI | CTRYAG | 6 cut(s) | 174, 1515, 1752, 2551, 3703, 3995 |
| BfrI | CTTAAG | 2 cut(s) | 2495, 3140 |
| BfuAI | ACCTGC | 3 cut(s) | 810, 1679, 3947 |
| BfuI | GTATCC | 1 cut(s) | 2282 |
| BglII | AGATCT | 2 cut(s) | 1748, 4013 |
| Bme1390I | CCNGG | 6 cut(s) | 606, 895, 1064, 1107, 1910, 2699 |
| Bme18I | GGWCC | 8 cut(s) | 958, 1601, 2038, 2352, 2606, 2822, 3408, 4104 |
| BmeT110I | CYCGRG | 1 cut(s) | 861 |
| BmiI | GGNNCC | 7 cut(s) | 74, 85, 129, 1079, 1893, 3409, 3594 |
| BmrFI | CCNGG | 6 cut(s) | 606, 895, 1064, 1107, 1910, 2699 |
| BmrI | ACTGGG | 1 cut(s) | 671 |
| BmtI | GCTAGC | 1 cut(s) | 918 |
| BmuI | ACTGGG | 1 cut(s) | 671 |
| BpiI | GAAGAC | 4 cut(s) | 690, 2217, 3103, 3399 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2315, 2347, 3254, 3286 |
| BpmI | CTGGAG | 5 cut(s) | 627, 1011, 1128, 1725, 2966 |
| Bpu10I | CCTNAGC | 3 cut(s) | 2175, 2403, 4034 |
| Bpu14I | TTCGAA | 1 cut(s) | 532 |
| BpuEI | CTTGAG | 6 cut(s) | 338, 1195, 1488, 1830, 1908, 4043 |
| BsaBI | GATNNNNATC | 1 cut(s) | 932 |
| BsaHI | GRCGYC | 1 cut(s) | 478 |
| BsaI | GGTCTC | 1 cut(s) | 2688 |
| BsaJI | CCNNGG | 8 cut(s) | 282, 381, 604, 2355, 2815, 3091, 3693, 3986 |
| BsaWI | WCCGGW | 1 cut(s) | 2824 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 163, 166, 193, 196, 2811, 2841 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 256, 300, 683, 2281, 2361, 2831, 3903 |
| Bse118I | RCCGGY | 1 cut(s) | 64 |
| Bse1I | ACTGG | 5 cut(s) | 677, 2116, 2748, 3427, 3686 |
| Bse3DI | GCAATG | 3 cut(s) | 396, 1504, 2965 |
| Bse8I | GATNNNNATC | 1 cut(s) | 932 |
| BseBI | CCWGG | 6 cut(s) | 606, 895, 1064, 1107, 1910, 2699 |
| BseDI | CCNNGG | 8 cut(s) | 282, 381, 604, 2355, 2815, 3091, 3693, 3986 |
| BseJI | GATNNNNATC | 1 cut(s) | 932 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 256, 300, 683, 2281, 2361, 2831, 3903 |
| BseMI | GCAATG | 3 cut(s) | 396, 1504, 2965 |
| BseNI | ACTGG | 5 cut(s) | 677, 2116, 2748, 3427, 3686 |
| BseRI | GAGGAG | 7 cut(s) | 124, 145, 148, 151, 154, 171, 174 |
| BseSI | GKGCMC | 1 cut(s) | 4067 |
| BseXI | GCAGC | 6 cut(s) | 774, 1813, 2524, 2565, 2870, 3242 |
| BseYI | CCCAGC | 3 cut(s) | 437, 2506, 2795 |
| BsgI | GTGCAG | 2 cut(s) | 510, 2512 |
| Bsh1236I | CGCG | 1 cut(s) | 19 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1291, 2300, 3762, 4067 |
| BsiHKCI | CYCGRG | 1 cut(s) | 861 |
| BsiSI | CCGG | 4 cut(s) | 65, 648, 923, 2825 |
| BslFI | GGGAC | 2 cut(s) | 866, 1282 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 256, 300, 683, 2281, 2361, 2831, 3903 |
| BsmAI | GTCTC | 4 cut(s) | 203, 2688, 3179, 3763 |
| BsmFI | GGGAC | 2 cut(s) | 866, 1282 |
| BsmI | GAATGC | 2 cut(s) | 523, 3342 |
| Bso31I | GGTCTC | 1 cut(s) | 2688 |
| BsoBI | CYCGRG | 1 cut(s) | 861 |
| Bsp119I | TTCGAA | 1 cut(s) | 532 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1291, 2300, 3762, 4067 |
| Bsp1407I | TGTACA | 1 cut(s) | 3302 |
| Bsp19I | CCATGG | 2 cut(s) | 3091, 3693 |
| Bsp68I | TCGCGA | 1 cut(s) | 19 |
| BspFNI | CGCG | 1 cut(s) | 19 |
| BspLI | GGNNCC | 7 cut(s) | 74, 85, 129, 1079, 1893, 3409, 3594 |
| BspMAI | CTGCAG | 2 cut(s) | 2555, 3999 |
| BspMI | ACCTGC | 3 cut(s) | 810, 1679, 3947 |
| BspOI | GCTAGC | 1 cut(s) | 918 |
| BspPI | GGATC | 2 cut(s) | 1097, 2173 |
| BspQI | GCTCTTC | 1 cut(s) | 2913 |
| BspT104I | TTCGAA | 1 cut(s) | 532 |
| BspTI | CTTAAG | 2 cut(s) | 2495, 3140 |
| BspTNI | GGTCTC | 1 cut(s) | 2688 |
| BsrBI | CCGCTC | 1 cut(s) | 122 |
| BsrDI | GCAATG | 3 cut(s) | 396, 1504, 2965 |
| BsrFI | RCCGGY | 1 cut(s) | 64 |
| BsrGI | TGTACA | 1 cut(s) | 3302 |
| BsrI | ACTGG | 5 cut(s) | 677, 2116, 2748, 3427, 3686 |
| BssAI | RCCGGY | 1 cut(s) | 64 |
| BssECI | CCNNGG | 8 cut(s) | 282, 381, 604, 2355, 2815, 3091, 3693, 3986 |
| BssNI | GRCGYC | 1 cut(s) | 478 |
| BssT1I | CCWWGG | 5 cut(s) | 381, 2355, 2815, 3091, 3693 |
| Bst2UI | CCWGG | 6 cut(s) | 606, 895, 1064, 1107, 1910, 2699 |
| Bst6I | CTCTTC | 6 cut(s) | 447, 2351, 2424, 2913, 3108, 3255 |
| BstACI | GRCGYC | 1 cut(s) | 478 |
| BstAFI | CTTAAG | 2 cut(s) | 2495, 3140 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1334, 2518, 3473 |
| BstAUI | TGTACA | 1 cut(s) | 3302 |
| BstBI | TTCGAA | 1 cut(s) | 532 |
| BstDSI | CCRYGG | 2 cut(s) | 3091, 3693 |
| BstFNI | CGCG | 1 cut(s) | 19 |
| BstMAI | GTCTC | 4 cut(s) | 203, 2688, 3179, 3763 |
| BstNI | CCWGG | 6 cut(s) | 606, 895, 1064, 1107, 1910, 2699 |
| BstNSI | RCATGY | 8 cut(s) | 199, 787, 1977, 2154, 2519, 3400, 3404, 3896 |
| BstSCI | CCNGG | 6 cut(s) | 604, 893, 1062, 1105, 1908, 2697 |
| BstSFI | CTRYAG | 6 cut(s) | 174, 1515, 1752, 2551, 3703, 3995 |
| BstSLI | GKGCMC | 1 cut(s) | 4067 |
| BstUI | CGCG | 1 cut(s) | 19 |
| BstV1I | GCAGC | 6 cut(s) | 774, 1813, 2524, 2565, 2870, 3242 |
| BstV2I | GAAGAC | 4 cut(s) | 690, 2217, 3103, 3399 |
| BstX2I | RGATCY | 3 cut(s) | 1102, 1748, 4013 |
| BstYI | RGATCY | 3 cut(s) | 1102, 1748, 4013 |
| BsuI | GTATCC | 1 cut(s) | 2282 |
| BtgI | CCRYGG | 2 cut(s) | 3091, 3693 |
| BtgZI | GCGATG | 2 cut(s) | 1215, 2790 |
| BtsI | GCAGTG | 3 cut(s) | 2584, 2593, 3111 |
| BtsIMutI | CAGTG | 6 cut(s) | 204, 661, 2584, 2593, 3111, 3369 |
| BtuMI | TCGCGA | 1 cut(s) | 19 |
| BveI | ACCTGC | 3 cut(s) | 810, 1679, 3947 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1721, 2220, 3681 |
| Cfr10I | RCCGGY | 1 cut(s) | 64 |
| CseI | GACGC | 1 cut(s) | 467 |
| Csp6I | GTAC | 7 cut(s) | 1049, 1724, 2383, 2812, 3303, 3730, 3890 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1804, 1839 |
| CviQI | GTAC | 7 cut(s) | 1049, 1724, 2383, 2812, 3303, 3730, 3890 |
| DraIII | CACNNNGTG | 1 cut(s) | 4101 |
| EaeI | YGGCCR | 2 cut(s) | 415, 930 |
| Eam1104I | CTCTTC | 6 cut(s) | 447, 2351, 2424, 2913, 3108, 3255 |
| EarI | CTCTTC | 6 cut(s) | 447, 2351, 2424, 2913, 3108, 3255 |
| Ecl136II | GAGCTC | 2 cut(s) | 2298, 3760 |
| Eco130I | CCWWGG | 5 cut(s) | 381, 2355, 2815, 3091, 3693 |
| Eco147I | AGGCCT | 1 cut(s) | 671 |
| Eco24I | GRGCYC | 2 cut(s) | 2300, 3762 |
| Eco31I | GGTCTC | 1 cut(s) | 2688 |
| Eco47I | GGWCC | 8 cut(s) | 958, 1601, 2038, 2352, 2606, 2822, 3408, 4104 |
| Eco53kI | GAGCTC | 2 cut(s) | 2298, 3760 |
| Eco57I | CTGAAG | 4 cut(s) | 1067, 1330, 2433, 3626 |
| Eco88I | CYCGRG | 1 cut(s) | 861 |
| EcoICRI | GAGCTC | 2 cut(s) | 2298, 3760 |
| EcoO109I | RGGNCCY | 1 cut(s) | 286 |
| EcoRI | GAATTC | 1 cut(s) | 623 |
| EcoRII | CCWGG | 6 cut(s) | 604, 893, 1062, 1105, 1908, 2697 |
| EcoT14I | CCWWGG | 5 cut(s) | 381, 2355, 2815, 3091, 3693 |
| EcoT22I | ATGCAT | 5 cut(s) | 525, 1663, 3169, 3181, 3402 |
| EcoT38I | GRGCYC | 2 cut(s) | 2300, 3762 |
| ErhI | CCWWGG | 5 cut(s) | 381, 2355, 2815, 3091, 3693 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1720, 1752 |
| FaqI | GGGAC | 2 cut(s) | 866, 1282 |
| FauI | CCCGC | 3 cut(s) | 349, 1480, 3639 |
| FauNDI | CATATG | 2 cut(s) | 3169, 3538 |
| FbaI | TGATCA | 2 cut(s) | 468, 3052 |
| FblI | GTMKAC | 3 cut(s) | 309, 2756, 3879 |
| FriOI | GRGCYC | 2 cut(s) | 2300, 3762 |
| GsaI | CCCAGC | 3 cut(s) | 441, 2510, 2799 |
| GsuI | CTGGAG | 5 cut(s) | 627, 1011, 1128, 1725, 2966 |
| HapII | CCGG | 4 cut(s) | 65, 648, 923, 2825 |
| HgaI | GACGC | 1 cut(s) | 467 |
| Hin1I | GRCGYC | 1 cut(s) | 478 |
| HincII | GTYRAC | 4 cut(s) | 310, 1902, 2757, 3880 |
| HindII | GTYRAC | 4 cut(s) | 310, 1902, 2757, 3880 |
| HindIII | AAGCTT | 3 cut(s) | 540, 2097, 2127 |
| HpaI | GTTAAC | 1 cut(s) | 1902 |
| HpaII | CCGG | 4 cut(s) | 65, 648, 923, 2825 |
| HphI | GGTGA | 7 cut(s) | 746, 1703, 1991, 2318, 2627, 3524, 3955 |
| Hpy99I | CGWCG | 2 cut(s) | 2761, 2764 |
| HpyAV | CCTTC | 7 cut(s) | 242, 256, 468, 1091, 2128, 3478, 3824 |
| HpyCH4IV | ACGT | 4 cut(s) | 447, 855, 1606, 2385 |
| HpySE526I | ACGT | 4 cut(s) | 447, 855, 1606, 2385 |
| Hsp92I | GRCGYC | 1 cut(s) | 478 |
| Ksp22I | TGATCA | 2 cut(s) | 468, 3052 |
| KspAI | GTTAAC | 1 cut(s) | 1902 |
| LguI | GCTCTTC | 1 cut(s) | 2913 |
| LmnI | GCTCC | 7 cut(s) | 89, 184, 204, 343, 1109, 3227, 4039 |
| Lsp1109I | GCAGC | 6 cut(s) | 774, 1813, 2524, 2565, 2870, 3242 |
| MaeII | ACGT | 4 cut(s) | 447, 855, 1606, 2385 |
| MbiI | CCGCTC | 1 cut(s) | 122 |
| MflI | RGATCY | 3 cut(s) | 1102, 1748, 4013 |
| MhlI | GDGCHC | 4 cut(s) | 1291, 2300, 3762, 4067 |
| MlsI | TGGCCA | 2 cut(s) | 417, 932 |
| MluNI | TGGCCA | 2 cut(s) | 417, 932 |
| MlyI | GAGTC | 9 cut(s) | 719, 1264, 1306, 1639, 1694, 2762, 2973, 3875, 4084 |
| MmeI | TCCRAC | 5 cut(s) | 1555, 1796, 2016, 3369, 4032 |
| Mox20I | TGGCCA | 2 cut(s) | 417, 932 |
| Mph1103I | ATGCAT | 5 cut(s) | 525, 1663, 3169, 3181, 3402 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1249, 1343, 2019, 2440 |
| MscI | TGGCCA | 2 cut(s) | 417, 932 |
| MslI | CAYNNNNRTG | 2 cut(s) | 588, 1041 |
| Msp20I | TGGCCA | 2 cut(s) | 417, 932 |
| MspA1I | CMGCKG | 4 cut(s) | 2556, 3553, 3646, 3812 |
| MspCI | CTTAAG | 2 cut(s) | 2495, 3140 |
| MspI | CCGG | 4 cut(s) | 65, 648, 923, 2825 |
| MspR9I | CCNGG | 6 cut(s) | 606, 895, 1064, 1107, 1910, 2699 |
| Mva1269I | GAATGC | 2 cut(s) | 523, 3342 |
| MvaI | CCWGG | 6 cut(s) | 606, 895, 1064, 1107, 1910, 2699 |
| MvnI | CGCG | 1 cut(s) | 19 |
| NcoI | CCATGG | 2 cut(s) | 3091, 3693 |
| NdeI | CATATG | 2 cut(s) | 3169, 3538 |
| NheI | GCTAGC | 1 cut(s) | 914 |
| NlaIV | GGNNCC | 7 cut(s) | 74, 85, 129, 1079, 1893, 3409, 3594 |
| NmeAIII | GCCGAG | 1 cut(s) | 3967 |
| NmuCI | GTSAC | 4 cut(s) | 797, 1691, 2003, 3943 |
| NruI | TCGCGA | 1 cut(s) | 19 |
| NsiI | ATGCAT | 5 cut(s) | 525, 1663, 3169, 3181, 3402 |
| NspI | RCATGY | 8 cut(s) | 199, 787, 1977, 2154, 2519, 3400, 3404, 3896 |
| NspV | TTCGAA | 1 cut(s) | 532 |
| PaeI | GCATGC | 5 cut(s) | 199, 787, 1977, 2154, 3404 |
| PaqCI | CACCTGC | 2 cut(s) | 1679, 3947 |
| PceI | AGGCCT | 1 cut(s) | 671 |
| PciSI | GCTCTTC | 1 cut(s) | 2913 |
| PctI | GAATGC | 2 cut(s) | 523, 3342 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1249, 1343, 2019, 2440 |
| PflFI | GACNNNGTC | 1 cut(s) | 905 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 683, 2361, 3903 |
| PfoI | TCCNGGA | 1 cut(s) | 1105 |
| PleI | GAGTC | 9 cut(s) | 718, 1264, 1306, 1639, 1694, 2761, 2973, 3875, 4083 |
| PpsI | GAGTC | 9 cut(s) | 718, 1264, 1306, 1639, 1694, 2761, 2973, 3875, 4083 |
| PshBI | ATTAAT | 1 cut(s) | 3071 |
| Psp124BI | GAGCTC | 2 cut(s) | 2300, 3762 |
| Psp6I | CCWGG | 6 cut(s) | 604, 893, 1062, 1105, 1908, 2697 |
| PspFI | CCCAGC | 3 cut(s) | 437, 2506, 2795 |
| PspGI | CCWGG | 6 cut(s) | 604, 893, 1062, 1105, 1908, 2697 |
| PspN4I | GGNNCC | 7 cut(s) | 74, 85, 129, 1079, 1893, 3409, 3594 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2375, 2407 |
| PstI | CTGCAG | 2 cut(s) | 2555, 3999 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1721, 2220, 3681 |
| PsuI | RGATCY | 3 cut(s) | 1102, 1748, 4013 |
| PsyI | GACNNNGTC | 1 cut(s) | 905 |
| PvuII | CAGCTG | 3 cut(s) | 2556, 3553, 3812 |
| RruI | TCGCGA | 1 cut(s) | 19 |
| RsaI | GTAC | 7 cut(s) | 1050, 1725, 2384, 2813, 3304, 3731, 3891 |
| RsaNI | GTAC | 7 cut(s) | 1049, 1724, 2383, 2812, 3303, 3730, 3890 |
| RseI | CAYNNNNRTG | 2 cut(s) | 588, 1041 |
| SacI | GAGCTC | 2 cut(s) | 2300, 3762 |
| SalI | GTCGAC | 3 cut(s) | 308, 2755, 3878 |
| SapI | GCTCTTC | 1 cut(s) | 2913 |
| SchI | GAGTC | 9 cut(s) | 719, 1264, 1306, 1639, 1694, 2762, 2973, 3875, 4084 |
| ScrFI | CCNGG | 6 cut(s) | 606, 895, 1064, 1107, 1910, 2699 |
| SduI | GDGCHC | 4 cut(s) | 1291, 2300, 3762, 4067 |
| SfcI | CTRYAG | 6 cut(s) | 174, 1515, 1752, 2551, 3703, 3995 |
| SfuI | TTCGAA | 1 cut(s) | 532 |
| SinI | GGWCC | 8 cut(s) | 958, 1601, 2038, 2352, 2606, 2822, 3408, 4104 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 588, 1041 |
| SmlI | CTYRAG | 8 cut(s) | 353, 1210, 1503, 1845, 1923, 2495, 3140, 4058 |
| SmoI | CTYRAG | 8 cut(s) | 353, 1210, 1503, 1845, 1923, 2495, 3140, 4058 |
| SpeI | ACTAGT | 2 cut(s) | 1934, 3413 |
| SphI | GCATGC | 5 cut(s) | 199, 787, 1977, 2154, 3404 |
| SseBI | AGGCCT | 1 cut(s) | 671 |
| SspI | AATATT | 1 cut(s) | 2805 |
| SstI | GAGCTC | 2 cut(s) | 2300, 3762 |
| StuI | AGGCCT | 1 cut(s) | 671 |
| StyD4I | CCNGG | 6 cut(s) | 604, 893, 1062, 1105, 1908, 2697 |
| StyI | CCWWGG | 5 cut(s) | 381, 2355, 2815, 3091, 3693 |
| TaiI | ACGT | 4 cut(s) | 450, 858, 1609, 2388 |
| TaqI | TCGA | 9 cut(s) | 237, 309, 532, 1158, 1282, 1995, 2011, 2756, 3879 |
| TatI | WGTACW | 1 cut(s) | 3302 |
| TauI | GCSGC | 4 cut(s) | 84, 1876, 2973, 3536 |
| TscAI | CASTG | 6 cut(s) | 211, 661, 2584, 2593, 3111, 3369 |
| TseFI | GTSAC | 4 cut(s) | 797, 1691, 2003, 3943 |
| TseI | GCWGC | 6 cut(s) | 787, 1826, 2512, 2553, 2858, 3230 |
| Tsp45I | GTSAC | 4 cut(s) | 797, 1691, 2003, 3943 |
| TspGWI | ACGGA | 6 cut(s) | 157, 1255, 1382, 2264, 3535, 4082 |
| TspRI | CASTG | 6 cut(s) | 211, 661, 2584, 2593, 3111, 3369 |
| Tth111I | GACNNNGTC | 1 cut(s) | 905 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 683, 2361, 3903 |
| Vha464I | CTTAAG | 2 cut(s) | 2495, 3140 |
| VneI | GTGCAC | 1 cut(s) | 4063 |
| VpaK11BI | GGWCC | 8 cut(s) | 958, 1601, 2038, 2352, 2606, 2822, 3408, 4104 |
| VspI | ATTAAT | 1 cut(s) | 3071 |
| XbaI | TCTAGA | 1 cut(s) | 1366 |
| XceI | RCATGY | 8 cut(s) | 199, 787, 1977, 2154, 2519, 3400, 3404, 3896 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2032 |
| XmiI | GTMKAC | 3 cut(s) | 309, 2756, 3879 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1249, 1343, 2019, 2440 |
| Zsp2I | ATGCAT | 5 cut(s) | 525, 1663, 3169, 3181, 3402 |