transcription, DNA-templated
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G35660 |
| fragaria_vesca | FvH4_2g11773 |
| malus_domestica | MD05G1041500.v1.1 MD10G1047900.v1.1 |
| prunus_persica | Prupe.8G057200_v2.0.a1 Prupe.8G057200_v2.0.a1 Prupe.8G057200_v2.0.a1 |
| pyrus_communis | pycom05g03420 pycom10g03390 |
| rosa_chinensis | RchiOBHm_Chr6g0272031 |
| rosa_laevigata | RLG00000013708 |
| rosa_multiflora | Rmu_sc0023166.1_g000001 |
| rosa_roxburghii | Rroxscaffold_173G00434950 Rroxscaffold_7G00196840 |
| rosa_rugosa | Rorug06G0065000 |
| rosa_samantha | Rh6AG182500 Rh6BG184700 Rh6CG183600 Rh6DG175200 |
| rosa_wichuraiana | Rw6G015700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 4269 |
| AatII | GACGTC | 1 cut(s) | 393 |
| Acc36I | ACCTGC | 1 cut(s) | 4269 |
| AccB1I | GGYRCC | 1 cut(s) | 25 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 2505, 3460, 4179 |
| AccBSI | CCGCTC | 1 cut(s) | 161 |
| AccI | GTMKAC | 1 cut(s) | 3579 |
| AccII | CGCG | 1 cut(s) | 196 |
| AclI | AACGTT | 1 cut(s) | 2174 |
| AclWI | GGATC | 6 cut(s) | 1172, 1253, 2187, 2314, 4266, 4279 |
| AcoI | YGGCCR | 1 cut(s) | 1086 |
| AcuI | CTGAAG | 7 cut(s) | 41, 248, 434, 1680, 1797, 2856, 4251 |
| AcyI | GRCGYC | 1 cut(s) | 390 |
| AfaI | GTAC | 6 cut(s) | 313, 746, 1704, 1875, 4010, 4167 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 2079, 2494, 2505, 3110, 3460, 4179, 4268 |
| AflII | CTTAAG | 1 cut(s) | 3494 |
| AflIII | ACRYGT | 2 cut(s) | 1933, 2959 |
| AhlI | ACTAGT | 1 cut(s) | 3692 |
| AjnI | CCWGG | 5 cut(s) | 673, 848, 1049, 1261, 2058 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1923, 1955 |
| Alw21I | GWGCWC | 5 cut(s) | 38, 193, 276, 857, 2438 |
| Alw26I | GTCTC | 5 cut(s) | 212, 2825, 3331, 3422, 3458 |
| Alw44I | GTGCAC | 1 cut(s) | 272 |
| AlwI | GGATC | 6 cut(s) | 1172, 1253, 2187, 2314, 4266, 4279 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1652, 1871 |
| Ama87I | CYCGRG | 2 cut(s) | 48, 4160 |
| ApaLI | GTGCAC | 1 cut(s) | 272 |
| ApeKI | GCWGC | 7 cut(s) | 266, 1976, 2697, 2700, 3158, 3509, 3812 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1405, 2160, 2584 |
| AspLEI | GCGC | 4 cut(s) | 810, 1531, 2025, 2760 |
| AspS9I | GGNCC | 9 cut(s) | 223, 346, 500, 2056, 2496, 3017, 3101, 3548, 3969 |
| AsuC2I | CCSGG | 1 cut(s) | 720 |
| AsuHPI | GGTGA | 6 cut(s) | 2132, 2361, 2551, 2924, 3803, 4148 |
| AsuNHI | GCTAGC | 1 cut(s) | 1972 |
| AvaI | CYCGRG | 2 cut(s) | 48, 4160 |
| AvaII | GGWCC | 3 cut(s) | 223, 2056, 3101 |
| BaeGI | GKGCMC | 2 cut(s) | 276, 2658 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3627, 3660 |
| BalI | TGGCCA | 1 cut(s) | 1088 |
| BamHI | GGATCC | 1 cut(s) | 4271 |
| BanI | GGYRCC | 1 cut(s) | 25 |
| BanII | GRGCYC | 4 cut(s) | 38, 236, 857, 2438 |
| BbsI | GAAGAC | 4 cut(s) | 541, 2334, 3173, 3382 |
| Bbv12I | GWGCWC | 5 cut(s) | 38, 193, 276, 857, 2438 |
| BbvCI | CCTCAGC | 1 cut(s) | 2316 |
| BbvI | GCAGC | 7 cut(s) | 253, 1963, 2687, 2709, 3145, 3521, 3799 |
| BceAI | ACGGC | 2 cut(s) | 418, 1231 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 377, 411, 581, 615 |
| BciT130I | CCWGG | 5 cut(s) | 675, 850, 1051, 1263, 2060 |
| BciVI | GTATCC | 2 cut(s) | 1115, 4282 |
| BclI | TGATCA | 2 cut(s) | 2419, 3331 |
| BcnI | CCSGG | 1 cut(s) | 720 |
| BcoDI | GTCTC | 5 cut(s) | 212, 2825, 3331, 3422, 3458 |
| BcuI | ACTAGT | 1 cut(s) | 3692 |
| BfaI | CTAG | 7 cut(s) | 333, 1523, 1973, 2570, 2687, 3693, 3699 |
| BfmI | CTRYAG | 5 cut(s) | 1629, 1902, 2671, 3105, 3982 |
| BfrI | CTTAAG | 1 cut(s) | 3494 |
| BfuAI | ACCTGC | 1 cut(s) | 4269 |
| BfuI | GTATCC | 2 cut(s) | 1115, 4282 |
| BglII | AGATCT | 2 cut(s) | 420, 2428 |
| BisI | GCNGC | 9 cut(s) | 112, 267, 285, 1977, 2698, 2701, 3159, 3510, 3813 |
| BlsI | GCNGC | 9 cut(s) | 113, 268, 286, 1978, 2699, 2702, 3160, 3511, 3814 |
| Bme1390I | CCNGG | 6 cut(s) | 675, 720, 850, 1051, 1263, 2060 |
| Bme18I | GGWCC | 3 cut(s) | 223, 2056, 3101 |
| BmeT110I | CYCGRG | 2 cut(s) | 48, 4160 |
| BmgT120I | GGNCC | 9 cut(s) | 223, 346, 500, 2056, 2496, 3017, 3101, 3548, 3969 |
| BmiI | GGNNCC | 9 cut(s) | 27, 46, 115, 1235, 1470, 3018, 3193, 3688, 4273 |
| BmrFI | CCNGG | 6 cut(s) | 675, 720, 850, 1051, 1263, 2060 |
| BmrI | ACTGGG | 2 cut(s) | 507, 3254 |
| BmtI | GCTAGC | 1 cut(s) | 1976 |
| BmuI | ACTGGG | 2 cut(s) | 507, 3254 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1749 |
| BpiI | GAAGAC | 4 cut(s) | 541, 2334, 3173, 3382 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 1163, 1195, 2459, 2491, 4021, 4053 |
| BpmI | CTGGAG | 3 cut(s) | 384, 1284, 2422 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2316, 2547 |
| BpuEI | CTTGAG | 4 cut(s) | 1351, 1980, 2624, 3404 |
| BpuMI | CCSGG | 1 cut(s) | 720 |
| Bsa29I | ATCGAT | 1 cut(s) | 1314 |
| BsaAI | YACGTR | 1 cut(s) | 3600 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2844 |
| BsaHI | GRCGYC | 1 cut(s) | 390 |
| BsaI | GGTCTC | 2 cut(s) | 3422, 3458 |
| BsaJI | CCNNGG | 9 cut(s) | 194, 279, 441, 674, 2499, 3094, 3945, 3972, 4161 |
| BsaWI | WCCGGW | 1 cut(s) | 1928 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 2079, 2494, 2505, 3110, 3460, 4179, 4268 |
| Bse1I | ACTGG | 6 cut(s) | 502, 1725, 2517, 3030, 3249, 3664 |
| Bse3DI | GCAATG | 5 cut(s) | 261, 393, 2815, 3244, 4083 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2844 |
| BseBI | CCWGG | 5 cut(s) | 675, 850, 1051, 1263, 2060 |
| BseCI | ATCGAT | 1 cut(s) | 1314 |
| BseDI | CCNNGG | 9 cut(s) | 194, 279, 441, 674, 2499, 3094, 3945, 3972, 4161 |
| BseJI | GATNNNNATC | 1 cut(s) | 2844 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 2079, 2494, 2505, 3110, 3460, 4179, 4268 |
| BseMI | GCAATG | 5 cut(s) | 261, 393, 2815, 3244, 4083 |
| BseNI | ACTGG | 6 cut(s) | 502, 1725, 2517, 3030, 3249, 3664 |
| BseSI | GKGCMC | 2 cut(s) | 276, 2658 |
| BseXI | GCAGC | 7 cut(s) | 253, 1963, 2687, 2709, 3145, 3521, 3799 |
| BseYI | CCCAGC | 2 cut(s) | 1289, 4213 |
| BsgI | GTGCAG | 3 cut(s) | 1136, 1542, 2879 |
| Bsh1236I | CGCG | 1 cut(s) | 196 |
| BshNI | GGYRCC | 1 cut(s) | 25 |
| BshVI | ATCGAT | 1 cut(s) | 1314 |
| BsiHKAI | GWGCWC | 5 cut(s) | 38, 193, 276, 857, 2438 |
| BsiHKCI | CYCGRG | 2 cut(s) | 48, 4160 |
| BsiSI | CCGG | 3 cut(s) | 288, 719, 1929 |
| BslFI | GGGAC | 3 cut(s) | 711, 1438, 1740 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 2079, 2494, 2505, 3110, 3460, 4179, 4268 |
| BsmAI | GTCTC | 5 cut(s) | 212, 2825, 3331, 3422, 3458 |
| BsmBI | CGTCTC | 1 cut(s) | 212 |
| BsmFI | GGGAC | 3 cut(s) | 711, 1438, 1740 |
| BsmI | GAATGC | 3 cut(s) | 210, 592, 3314 |
| Bso31I | GGTCTC | 2 cut(s) | 3422, 3458 |
| BsoBI | CYCGRG | 2 cut(s) | 48, 4160 |
| Bsp1286I | GDGCHC | 7 cut(s) | 38, 193, 236, 276, 857, 2438, 2658 |
| Bsp19I | CCATGG | 1 cut(s) | 3972 |
| BspDI | ATCGAT | 1 cut(s) | 1314 |
| BspFNI | CGCG | 1 cut(s) | 196 |
| BspHI | TCATGA | 1 cut(s) | 1099 |
| BspLI | GGNNCC | 9 cut(s) | 27, 46, 115, 1235, 1470, 3018, 3193, 3688, 4273 |
| BspMAI | CTGCAG | 3 cut(s) | 1906, 2675, 3109 |
| BspMI | ACCTGC | 1 cut(s) | 4269 |
| BspOI | GCTAGC | 1 cut(s) | 1976 |
| BspPI | GGATC | 6 cut(s) | 1172, 1253, 2187, 2314, 4266, 4279 |
| BspQI | GCTCTTC | 2 cut(s) | 224, 1593 |
| BspT107I | GGYRCC | 1 cut(s) | 25 |
| BspTI | CTTAAG | 1 cut(s) | 3494 |
| BspTNI | GGTCTC | 2 cut(s) | 3422, 3458 |
| BsrBI | CCGCTC | 1 cut(s) | 161 |
| BsrDI | GCAATG | 5 cut(s) | 261, 393, 2815, 3244, 4083 |
| BsrI | ACTGG | 6 cut(s) | 502, 1725, 2517, 3030, 3249, 3664 |
| BssECI | CCNNGG | 9 cut(s) | 194, 279, 441, 674, 2499, 3094, 3945, 3972, 4161 |
| BssNAI | GTATAC | 1 cut(s) | 3580 |
| BssNI | GRCGYC | 1 cut(s) | 390 |
| BssT1I | CCWWGG | 6 cut(s) | 279, 441, 2499, 3094, 3945, 3972 |
| Bst1107I | GTATAC | 1 cut(s) | 3580 |
| Bst2UI | CCWGG | 5 cut(s) | 675, 850, 1051, 1263, 2060 |
| Bst6I | CTCTTC | 8 cut(s) | 224, 507, 877, 1593, 1969, 2495, 3387, 3534 |
| BstACI | GRCGYC | 1 cut(s) | 390 |
| BstAFI | CTTAAG | 1 cut(s) | 3494 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1490 |
| BstBAI | YACGTR | 1 cut(s) | 3600 |
| BstDSI | CCRYGG | 2 cut(s) | 194, 3972 |
| BstFNI | CGCG | 1 cut(s) | 196 |
| BstHHI | GCGC | 4 cut(s) | 810, 1531, 2025, 2760 |
| BstMAI | GTCTC | 5 cut(s) | 212, 2825, 3331, 3422, 3458 |
| BstNI | CCWGG | 5 cut(s) | 675, 850, 1051, 1263, 2060 |
| BstNSI | RCATGY | 7 cut(s) | 943, 1937, 2118, 2963, 3683, 3964, 4105 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1749 |
| BstSCI | CCNGG | 6 cut(s) | 673, 718, 848, 1049, 1261, 2058 |
| BstSFI | CTRYAG | 5 cut(s) | 1629, 1902, 2671, 3105, 3982 |
| BstSLI | GKGCMC | 2 cut(s) | 276, 2658 |
| BstSNI | TACGTA | 1 cut(s) | 3600 |
| BstUI | CGCG | 1 cut(s) | 196 |
| BstV1I | GCAGC | 7 cut(s) | 253, 1963, 2687, 2709, 3145, 3521, 3799 |
| BstV2I | GAAGAC | 4 cut(s) | 541, 2334, 3173, 3382 |
| BstX2I | RGATCY | 5 cut(s) | 420, 1164, 1258, 2428, 4271 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1038 |
| BstYI | RGATCY | 5 cut(s) | 420, 1164, 1258, 2428, 4271 |
| BstZ17I | GTATAC | 1 cut(s) | 3580 |
| Bsu15I | ATCGAT | 1 cut(s) | 1314 |
| BsuI | GTATCC | 2 cut(s) | 1115, 4282 |
| BsuTUI | ATCGAT | 1 cut(s) | 1314 |
| BtgI | CCRYGG | 2 cut(s) | 194, 3972 |
| BtgZI | GCGATG | 1 cut(s) | 225 |
| BtsI | GCAGTG | 2 cut(s) | 2728, 2737 |
| BtsIMutI | CAGTG | 9 cut(s) | 65, 189, 1470, 1650, 2510, 2728, 2737, 2958, 3767 |
| BveI | ACCTGC | 1 cut(s) | 4269 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1652, 1871 |
| CciI | TCATGA | 1 cut(s) | 1099 |
| CfoI | GCGC | 4 cut(s) | 810, 1531, 2025, 2760 |
| Cfr13I | GGNCC | 9 cut(s) | 223, 346, 500, 2056, 2496, 3017, 3101, 3548, 3969 |
| Cfr42I | CCGCGG | 1 cut(s) | 197 |
| ClaI | ATCGAT | 1 cut(s) | 1314 |
| CseI | GACGC | 1 cut(s) | 490 |
| Csp6I | GTAC | 6 cut(s) | 312, 745, 1703, 1874, 4009, 4166 |
| CviQI | GTAC | 6 cut(s) | 312, 745, 1703, 1874, 4009, 4166 |
| DraI | TTTAAA | 1 cut(s) | 757 |
| EaeI | YGGCCR | 1 cut(s) | 1086 |
| Eam1104I | CTCTTC | 8 cut(s) | 224, 507, 877, 1593, 1969, 2495, 3387, 3534 |
| EarI | CTCTTC | 8 cut(s) | 224, 507, 877, 1593, 1969, 2495, 3387, 3534 |
| EciI | GGCGGA | 1 cut(s) | 3965 |
| Ecl136II | GAGCTC | 3 cut(s) | 36, 855, 2436 |
| Eco105I | TACGTA | 1 cut(s) | 3600 |
| Eco130I | CCWWGG | 6 cut(s) | 279, 441, 2499, 3094, 3945, 3972 |
| Eco24I | GRGCYC | 4 cut(s) | 38, 236, 857, 2438 |
| Eco31I | GGTCTC | 2 cut(s) | 3422, 3458 |
| Eco32I | GATATC | 1 cut(s) | 2891 |
| Eco47I | GGWCC | 3 cut(s) | 223, 2056, 3101 |
| Eco53kI | GAGCTC | 3 cut(s) | 36, 855, 2436 |
| Eco57I | CTGAAG | 7 cut(s) | 41, 248, 434, 1680, 1797, 2856, 4251 |
| Eco88I | CYCGRG | 2 cut(s) | 48, 4160 |
| EcoICRI | GAGCTC | 3 cut(s) | 36, 855, 2436 |
| EcoO109I | RGGNCCY | 2 cut(s) | 346, 3101 |
| EcoRI | GAATTC | 2 cut(s) | 1517, 2534 |
| EcoRII | CCWGG | 5 cut(s) | 673, 848, 1049, 1261, 2058 |
| EcoRV | GATATC | 1 cut(s) | 2891 |
| EcoT14I | CCWWGG | 6 cut(s) | 279, 441, 2499, 3094, 3945, 3972 |
| EcoT22I | ATGCAT | 4 cut(s) | 594, 1813, 3460, 3943 |
| EcoT38I | GRGCYC | 4 cut(s) | 38, 236, 857, 2438 |
| ErhI | CCWWGG | 6 cut(s) | 279, 441, 2499, 3094, 3945, 3972 |
| Esp3I | CGTCTC | 1 cut(s) | 212 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 407, 439, 1038, 1070, 4231, 4263 |
| FaqI | GGGAC | 3 cut(s) | 711, 1438, 1740 |
| FauI | CCCGC | 5 cut(s) | 182, 243, 630, 1542, 1717 |
| FauNDI | CATATG | 2 cut(s) | 1741, 2797 |
| FbaI | TGATCA | 2 cut(s) | 2419, 3331 |
| FblI | GTMKAC | 1 cut(s) | 3579 |
| Fnu4HI | GCNGC | 9 cut(s) | 112, 267, 285, 1977, 2698, 2701, 3159, 3510, 3813 |
| FriOI | GRGCYC | 4 cut(s) | 38, 236, 857, 2438 |
| Fsp4HI | GCNGC | 9 cut(s) | 112, 267, 285, 1977, 2698, 2701, 3159, 3510, 3813 |
| FspBI | CTAG | 7 cut(s) | 333, 1523, 1973, 2570, 2687, 3693, 3699 |
| GlaI | GCGC | 4 cut(s) | 809, 1530, 2024, 2759 |
| GluI | GCNGC | 9 cut(s) | 112, 267, 285, 1977, 2698, 2701, 3159, 3510, 3813 |
| GsaI | CCCAGC | 2 cut(s) | 1293, 4217 |
| GsuI | CTGGAG | 3 cut(s) | 384, 1284, 2422 |
| HapII | CCGG | 3 cut(s) | 288, 719, 1929 |
| HgaI | GACGC | 1 cut(s) | 490 |
| HhaI | GCGC | 4 cut(s) | 810, 1531, 2025, 2760 |
| Hin1I | GRCGYC | 1 cut(s) | 390 |
| Hin6I | GCGC | 4 cut(s) | 808, 1529, 2023, 2758 |
| HinP1I | GCGC | 4 cut(s) | 808, 1529, 2023, 2758 |
| HindIII | AAGCTT | 4 cut(s) | 609, 1779, 2238, 2268 |
| HpaII | CCGG | 3 cut(s) | 288, 719, 1929 |
| HphI | GGTGA | 6 cut(s) | 2132, 2361, 2551, 2924, 3803, 4148 |
| Hpy166II | GTNNAC | 6 cut(s) | 274, 747, 1640, 3580, 4168, 4371 |
| Hpy8I | GTNNAC | 6 cut(s) | 274, 747, 1640, 3580, 4168, 4371 |
| Hpy99I | CGWCG | 5 cut(s) | 34, 101, 217, 392, 899 |
| HpyCH4IV | ACGT | 4 cut(s) | 390, 538, 2174, 3599 |
| HpySE526I | ACGT | 4 cut(s) | 390, 538, 2174, 3599 |
| Hsp92I | GRCGYC | 1 cut(s) | 390 |
| HspAI | GCGC | 4 cut(s) | 808, 1529, 2023, 2758 |
| Ksp22I | TGATCA | 2 cut(s) | 2419, 3331 |
| KspI | CCGCGG | 1 cut(s) | 197 |
| LguI | GCTCTTC | 2 cut(s) | 224, 1593 |
| Lsp1109I | GCAGC | 7 cut(s) | 253, 1963, 2687, 2709, 3145, 3521, 3799 |
| MaeI | CTAG | 7 cut(s) | 333, 1523, 1973, 2570, 2687, 3693, 3699 |
| MaeII | ACGT | 4 cut(s) | 390, 538, 2174, 3599 |
| MaeIII | GTNAC | 9 cut(s) | 890, 953, 1014, 1024, 1648, 1771, 2144, 3149, 3359 |
| MbiI | CCGCTC | 1 cut(s) | 161 |
| MfeI | CAATTG | 2 cut(s) | 456, 4346 |
| MflI | RGATCY | 5 cut(s) | 420, 1164, 1258, 2428, 4271 |
| MhlI | GDGCHC | 7 cut(s) | 38, 193, 236, 276, 857, 2438, 2658 |
| MlsI | TGGCCA | 1 cut(s) | 1088 |
| MluNI | TGGCCA | 1 cut(s) | 1088 |
| MlyI | GAGTC | 5 cut(s) | 875, 1420, 2225, 4127, 4133 |
| MmeI | TCCRAC | 8 cut(s) | 236, 454, 2157, 2189, 2497, 3091, 3946, 4062 |
| Mox20I | TGGCCA | 1 cut(s) | 1088 |
| Mph1103I | ATGCAT | 4 cut(s) | 594, 1813, 3460, 3943 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1405, 2160, 2584 |
| MscI | TGGCCA | 1 cut(s) | 1088 |
| MslI | CAYNNNNRTG | 3 cut(s) | 708, 1197, 4071 |
| Msp20I | TGGCCA | 1 cut(s) | 1088 |
| MspA1I | CMGCKG | 4 cut(s) | 196, 404, 2700, 3197 |
| MspCI | CTTAAG | 1 cut(s) | 3494 |
| MspI | CCGG | 3 cut(s) | 288, 719, 1929 |
| MspR9I | CCNGG | 6 cut(s) | 675, 720, 850, 1051, 1263, 2060 |
| MunI | CAATTG | 2 cut(s) | 456, 4346 |
| Mva1269I | GAATGC | 3 cut(s) | 210, 592, 3314 |
| MvaI | CCWGG | 5 cut(s) | 675, 850, 1051, 1263, 2060 |
| MvnI | CGCG | 1 cut(s) | 196 |
| NciI | CCSGG | 1 cut(s) | 720 |
| NcoI | CCATGG | 1 cut(s) | 3972 |
| NdeI | CATATG | 2 cut(s) | 1741, 2797 |
| NheI | GCTAGC | 1 cut(s) | 1972 |
| NlaIV | GGNNCC | 9 cut(s) | 27, 46, 115, 1235, 1470, 3018, 3193, 3688, 4273 |
| NmuCI | GTSAC | 4 cut(s) | 953, 1014, 1648, 2144 |
| NsiI | ATGCAT | 4 cut(s) | 594, 1813, 3460, 3943 |
| NspI | RCATGY | 7 cut(s) | 943, 1937, 2118, 2963, 3683, 3964, 4105 |
| PaeI | GCATGC | 2 cut(s) | 943, 4105 |
| PagI | TCATGA | 1 cut(s) | 1099 |
| PaqCI | CACCTGC | 1 cut(s) | 4269 |
| PciI | ACATGT | 2 cut(s) | 1933, 2959 |
| PciSI | GCTCTTC | 2 cut(s) | 224, 1593 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 26 |
| PctI | GAATGC | 3 cut(s) | 210, 592, 3314 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1405, 2160, 2584 |
| PflFI | GACNNNGTC | 1 cut(s) | 1061 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 2505, 3460, 4179 |
| PfoI | TCCNGGA | 2 cut(s) | 848, 1261 |
| PkrI | GCNGC | 9 cut(s) | 113, 268, 286, 1978, 2699, 2702, 3160, 3511, 3814 |
| PleI | GAGTC | 5 cut(s) | 874, 1420, 2224, 4127, 4133 |
| PpsI | GAGTC | 5 cut(s) | 874, 1420, 2224, 4127, 4133 |
| Ppu21I | YACGTR | 1 cut(s) | 3600 |
| PpuMI | RGGWCCY | 1 cut(s) | 3101 |
| PscI | ACATGT | 2 cut(s) | 1933, 2959 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1749 |
| Psp124BI | GAGCTC | 3 cut(s) | 38, 857, 2438 |
| Psp1406I | AACGTT | 1 cut(s) | 2174 |
| Psp5II | RGGWCCY | 1 cut(s) | 3101 |
| Psp6I | CCWGG | 5 cut(s) | 673, 848, 1049, 1261, 2058 |
| PspFI | CCCAGC | 2 cut(s) | 1289, 4213 |
| PspGI | CCWGG | 5 cut(s) | 673, 848, 1049, 1261, 2058 |
| PspN4I | GGNNCC | 9 cut(s) | 27, 46, 115, 1235, 1470, 3018, 3193, 3688, 4273 |
| PspPI | GGNCC | 9 cut(s) | 223, 346, 500, 2056, 2496, 3017, 3101, 3548, 3969 |
| PspPPI | RGGWCCY | 1 cut(s) | 3101 |
| PstI | CTGCAG | 3 cut(s) | 1906, 2675, 3109 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1652, 1871 |
| PsuI | RGATCY | 5 cut(s) | 420, 1164, 1258, 2428, 4271 |
| PsyI | GACNNNGTC | 1 cut(s) | 1061 |
| PvuII | CAGCTG | 2 cut(s) | 404, 2700 |
| RsaI | GTAC | 6 cut(s) | 313, 746, 1704, 1875, 4010, 4167 |
| RsaNI | GTAC | 6 cut(s) | 312, 745, 1703, 1874, 4009, 4166 |
| RseI | CAYNNNNRTG | 3 cut(s) | 708, 1197, 4071 |
| SacI | GAGCTC | 3 cut(s) | 38, 857, 2438 |
| SacII | CCGCGG | 1 cut(s) | 197 |
| SapI | GCTCTTC | 2 cut(s) | 224, 1593 |
| SatI | GCNGC | 9 cut(s) | 112, 267, 285, 1977, 2698, 2701, 3159, 3510, 3813 |
| Sau96I | GGNCC | 9 cut(s) | 223, 346, 500, 2056, 2496, 3017, 3101, 3548, 3969 |
| SchI | GAGTC | 5 cut(s) | 875, 1420, 2225, 4127, 4133 |
| ScrFI | CCNGG | 6 cut(s) | 675, 720, 850, 1051, 1263, 2060 |
| SduI | GDGCHC | 7 cut(s) | 38, 193, 236, 276, 857, 2438, 2658 |
| SfcI | CTRYAG | 5 cut(s) | 1629, 1902, 2671, 3105, 3982 |
| Sfr303I | CCGCGG | 1 cut(s) | 197 |
| SgrBI | CCGCGG | 1 cut(s) | 197 |
| SinI | GGWCC | 3 cut(s) | 223, 2056, 3101 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 708, 1197, 4071 |
| SmlI | CTYRAG | 5 cut(s) | 1366, 1995, 2639, 3419, 3494 |
| SmoI | CTYRAG | 5 cut(s) | 1366, 1995, 2639, 3419, 3494 |
| SnaBI | TACGTA | 1 cut(s) | 3600 |
| SpeI | ACTAGT | 1 cut(s) | 3692 |
| SphI | GCATGC | 2 cut(s) | 943, 4105 |
| SspI | AATATT | 1 cut(s) | 2585 |
| SspMI | CTAG | 7 cut(s) | 333, 1523, 1973, 2570, 2687, 3693, 3699 |
| SstI | GAGCTC | 3 cut(s) | 38, 857, 2438 |
| StyD4I | CCNGG | 6 cut(s) | 673, 718, 848, 1049, 1261, 2058 |
| StyI | CCWWGG | 6 cut(s) | 279, 441, 2499, 3094, 3945, 3972 |
| TaiI | ACGT | 4 cut(s) | 393, 541, 2177, 3602 |
| TaqI | TCGA | 9 cut(s) | 32, 202, 387, 448, 510, 1314, 1438, 2466, 3250 |
| TatI | WGTACW | 1 cut(s) | 744 |
| TauI | GCSGC | 2 cut(s) | 114, 287 |
| TscAI | CASTG | 9 cut(s) | 65, 189, 1470, 1657, 2517, 2728, 2737, 2958, 3774 |
| TseFI | GTSAC | 4 cut(s) | 953, 1014, 1648, 2144 |
| TseI | GCWGC | 7 cut(s) | 266, 1976, 2697, 2700, 3158, 3509, 3812 |
| Tsp45I | GTSAC | 4 cut(s) | 953, 1014, 1648, 2144 |
| TspGWI | ACGGA | 3 cut(s) | 230, 236, 1869 |
| TspRI | CASTG | 9 cut(s) | 65, 189, 1470, 1657, 2517, 2728, 2737, 2958, 3774 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1061 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 2505, 3460, 4179 |
| Vha464I | CTTAAG | 1 cut(s) | 3494 |
| VneI | GTGCAC | 1 cut(s) | 272 |
| VpaK11BI | GGWCC | 3 cut(s) | 223, 2056, 3101 |
| XceI | RCATGY | 7 cut(s) | 943, 1937, 2118, 2963, 3683, 3964, 4105 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2906 |
| XmiI | GTMKAC | 1 cut(s) | 3579 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1405, 2160, 2584 |
| XspI | CTAG | 7 cut(s) | 333, 1523, 1973, 2570, 2687, 3693, 3699 |
| ZraI | GACGTC | 1 cut(s) | 391 |
| Zsp2I | ATGCAT | 4 cut(s) | 594, 1813, 3460, 3943 |