transcription, DNA-templated
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G35660 |
| fragaria_vesca | FvH4_2g11773 |
| malus_domestica | MD05G1041500.v1.1 MD10G1047900.v1.1 |
| prunus_persica | Prupe.8G057200_v2.0.a1 Prupe.8G057200_v2.0.a1 Prupe.8G057200_v2.0.a1 |
| pyrus_communis | pycom05g03420 pycom10g03390 |
| rosa_chinensis | RchiOBHm_Chr6g0272031 |
| rosa_laevigata | RLG00000013708 |
| rosa_multiflora | Rmu_sc0023166.1_g000001 |
| rosa_roxburghii | Rroxscaffold_173G00434950 Rroxscaffold_7G00196840 |
| rosa_rugosa | Rorug06G0065000 |
| rosa_samantha | Rh6AG182500 Rh6BG184700 Rh6CG183600 Rh6DG175200 |
| rosa_wichuraiana | Rw6G015700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2262 |
| AarI | CACCTGC | 1 cut(s) | 1847 |
| Acc16I | TGCGCA | 1 cut(s) | 868 |
| Acc36I | ACCTGC | 1 cut(s) | 1847 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2523, 4155 |
| AccI | GTMKAC | 2 cut(s) | 2678, 2993 |
| AccII | CGCG | 1 cut(s) | 193 |
| AciI | CCGC | 8 cut(s) | 108, 172, 191, 193, 294, 656, 949, 3080 |
| AclWI | GGATC | 7 cut(s) | 49, 1184, 1265, 2319, 2332, 2454, 2572 |
| AcoI | YGGCCR | 2 cut(s) | 1098, 2272 |
| AcsI | RAATTY | 7 cut(s) | 247, 589, 1753, 2354, 2396, 2552, 3260 |
| AcuI | CTGAAG | 4 cut(s) | 38, 443, 1941, 2874 |
| AcvI | CACGTG | 1 cut(s) | 4211 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 259, 655, 656, 2097, 2512, 2523, 2587, 3083, 4155 |
| AflIII | ACRYGT | 2 cut(s) | 1951, 4210 |
| AgeI | ACCGGT | 1 cut(s) | 506 |
| AhlI | ACTAGT | 1 cut(s) | 2530 |
| AjnI | CCWGG | 7 cut(s) | 682, 860, 1061, 1128, 1273, 1505, 2076 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 4172, 4204 |
| Alw21I | GWGCWC | 3 cut(s) | 190, 1459, 2456 |
| Alw26I | GTCTC | 6 cut(s) | 209, 2841, 3304, 3395, 3431, 3753 |
| AlwI | GGATC | 7 cut(s) | 49, 1184, 1265, 2319, 2332, 2454, 2572 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1889 |
| Ama87I | CYCGRG | 1 cut(s) | 45 |
| ApoI | RAATTY | 7 cut(s) | 247, 589, 1753, 2354, 2396, 2552, 3260 |
| AseI | ATTAAT | 1 cut(s) | 3323 |
| AsiGI | ACCGGT | 1 cut(s) | 506 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1417, 2178, 2893 |
| AspLEI | GCGC | 4 cut(s) | 869, 1193, 2043, 2778 |
| AspS9I | GGNCC | 9 cut(s) | 355, 509, 2074, 2197, 2514, 3074, 3340, 3524, 3962 |
| AsuC2I | CCSGG | 1 cut(s) | 254 |
| AsuHPI | GGTGA | 3 cut(s) | 863, 2150, 3893 |
| AsuII | TTCGAA | 3 cut(s) | 610, 3412, 4121 |
| AvaI | CYCGRG | 1 cut(s) | 45 |
| AvaII | GGWCC | 3 cut(s) | 509, 2197, 3074 |
| BalI | TGGCCA | 2 cut(s) | 1100, 2274 |
| BamHI | GGATCC | 1 cut(s) | 2324 |
| BanII | GRGCYC | 1 cut(s) | 2456 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2585, 2617 |
| BbrPI | CACGTG | 1 cut(s) | 4211 |
| BbsI | GAAGAC | 3 cut(s) | 2352, 3146, 3355 |
| Bbv12I | GWGCWC | 3 cut(s) | 190, 1459, 2456 |
| BbvCI | CCTCAGC | 2 cut(s) | 1671, 4277 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 590, 624, 940, 974, 1852, 1886 |
| BciT130I | CCWGG | 7 cut(s) | 684, 862, 1063, 1130, 1275, 1507, 2078 |
| BclI | TGATCA | 2 cut(s) | 3304, 4129 |
| BcnI | CCSGG | 1 cut(s) | 254 |
| BcoDI | GTCTC | 6 cut(s) | 209, 2841, 3304, 3395, 3431, 3753 |
| BcuI | ACTAGT | 1 cut(s) | 2530 |
| BfaI | CTAG | 8 cut(s) | 342, 1535, 1991, 2531, 2972, 3135, 3669, 3675 |
| BfmI | CTRYAG | 3 cut(s) | 1641, 2048, 2689 |
| BfoI | RGCGCY | 1 cut(s) | 1194 |
| BfuAI | ACCTGC | 1 cut(s) | 1847 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3678 |
| BglII | AGATCT | 1 cut(s) | 429 |
| Bme1390I | CCNGG | 8 cut(s) | 254, 684, 862, 1063, 1130, 1275, 1507, 2078 |
| Bme18I | GGWCC | 3 cut(s) | 509, 2197, 3074 |
| BmeT110I | CYCGRG | 1 cut(s) | 45 |
| BmgT120I | GGNCC | 9 cut(s) | 355, 509, 2074, 2197, 2514, 3074, 3340, 3524, 3962 |
| BmiI | GGNNCC | 6 cut(s) | 112, 1247, 1482, 1879, 2326, 3964 |
| BmrFI | CCNGG | 8 cut(s) | 254, 684, 862, 1063, 1130, 1275, 1507, 2078 |
| BmrI | ACTGGG | 1 cut(s) | 3227 |
| BmuI | ACTGGG | 1 cut(s) | 3227 |
| BpiI | GAAGAC | 3 cut(s) | 2352, 3146, 3355 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2477, 2509 |
| BpmI | CTGGAG | 7 cut(s) | 318, 393, 705, 1296, 2462, 2609, 3657 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1671, 4277 |
| Bpu14I | TTCGAA | 3 cut(s) | 610, 3412, 4121 |
| BpuEI | CTTGAG | 3 cut(s) | 2642, 3377, 4286 |
| BpuMI | CCSGG | 1 cut(s) | 254 |
| Bsa29I | ATCGAT | 1 cut(s) | 464 |
| BsaAI | YACGTR | 5 cut(s) | 1562, 1793, 3576, 3704, 4211 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1100, 2862 |
| BsaI | GGTCTC | 1 cut(s) | 2841 |
| BsaWI | WCCGGW | 1 cut(s) | 506 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3731, 3761 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 259, 655, 656, 2097, 2512, 2523, 2587, 3083, 4155 |
| Bse118I | RCCGGY | 1 cut(s) | 506 |
| Bse1I | ACTGG | 5 cut(s) | 1727, 2275, 2592, 3003, 3222 |
| Bse3DI | GCAATG | 4 cut(s) | 270, 402, 3217, 4059 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1100, 2862 |
| BseBI | CCWGG | 7 cut(s) | 684, 862, 1063, 1130, 1275, 1507, 2078 |
| BseCI | ATCGAT | 1 cut(s) | 464 |
| BseJI | GATNNNNATC | 2 cut(s) | 1100, 2862 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 259, 655, 656, 2097, 2512, 2523, 2587, 3083, 4155 |
| BseMI | GCAATG | 4 cut(s) | 270, 402, 3217, 4059 |
| BseNI | ACTGG | 5 cut(s) | 1727, 2275, 2592, 3003, 3222 |
| BseRI | GAGGAG | 2 cut(s) | 947, 1972 |
| BseYI | CCCAGC | 2 cut(s) | 1301, 2668 |
| BsgI | GTGCAG | 4 cut(s) | 588, 1554, 2568, 4191 |
| Bsh1236I | CGCG | 1 cut(s) | 193 |
| BshTI | ACCGGT | 1 cut(s) | 506 |
| BshVI | ATCGAT | 1 cut(s) | 464 |
| BsiHKAI | GWGCWC | 3 cut(s) | 190, 1459, 2456 |
| BsiHKCI | CYCGRG | 1 cut(s) | 45 |
| BsiSI | CCGG | 2 cut(s) | 254, 507 |
| BslFI | GGGAC | 6 cut(s) | 632, 720, 803, 831, 1450, 2685 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 259, 655, 656, 2097, 2512, 2523, 2587, 3083, 4155 |
| BsmAI | GTCTC | 6 cut(s) | 209, 2841, 3304, 3395, 3431, 3753 |
| BsmFI | GGGAC | 6 cut(s) | 632, 720, 803, 831, 1450, 2685 |
| BsmI | GAATGC | 4 cut(s) | 207, 601, 3287, 3597 |
| Bso31I | GGTCTC | 1 cut(s) | 2841 |
| BsoBI | CYCGRG | 1 cut(s) | 45 |
| Bsp119I | TTCGAA | 3 cut(s) | 610, 3412, 4121 |
| Bsp1286I | GDGCHC | 3 cut(s) | 190, 1459, 2456 |
| Bsp19I | CCATGG | 3 cut(s) | 11, 3343, 3948 |
| BspACI | CCGC | 8 cut(s) | 108, 172, 191, 193, 294, 656, 949, 3080 |
| BspDI | ATCGAT | 1 cut(s) | 464 |
| BspFNI | CGCG | 1 cut(s) | 193 |
| BspHI | TCATGA | 2 cut(s) | 1111, 2767 |
| BspLI | GGNNCC | 6 cut(s) | 112, 1247, 1482, 1879, 2326, 3964 |
| BspMAI | CTGCAG | 2 cut(s) | 2052, 2693 |
| BspMI | ACCTGC | 1 cut(s) | 1847 |
| BspPI | GGATC | 7 cut(s) | 49, 1184, 1265, 2319, 2332, 2454, 2572 |
| BspQI | GCTCTTC | 1 cut(s) | 1605 |
| BspT104I | TTCGAA | 3 cut(s) | 610, 3412, 4121 |
| BspTNI | GGTCTC | 1 cut(s) | 2841 |
| BsrDI | GCAATG | 4 cut(s) | 270, 402, 3217, 4059 |
| BsrFI | RCCGGY | 1 cut(s) | 506 |
| BsrI | ACTGG | 5 cut(s) | 1727, 2275, 2592, 3003, 3222 |
| BssAI | RCCGGY | 1 cut(s) | 506 |
| BssNAI | GTATAC | 1 cut(s) | 2679 |
| BssT1I | CCWWGG | 9 cut(s) | 11, 288, 450, 2517, 2565, 3067, 3343, 3921, 3948 |
| Bst1107I | GTATAC | 1 cut(s) | 2679 |
| Bst2UI | CCWGG | 7 cut(s) | 684, 862, 1063, 1130, 1275, 1507, 2078 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1502, 4205 |
| BstBAI | YACGTR | 5 cut(s) | 1562, 1793, 3576, 3704, 4211 |
| BstBI | TTCGAA | 3 cut(s) | 610, 3412, 4121 |
| BstC8I | GCNNGC | 9 cut(s) | 953, 1010, 1265, 1938, 2737, 3402, 3523, 3810, 3814 |
| BstDSI | CCRYGG | 4 cut(s) | 11, 191, 3343, 3948 |
| BstFNI | CGCG | 1 cut(s) | 193 |
| BstH2I | RGCGCY | 1 cut(s) | 1194 |
| BstHHI | GCGC | 4 cut(s) | 869, 1193, 2043, 2778 |
| BstMAI | GTCTC | 6 cut(s) | 209, 2841, 3304, 3395, 3431, 3753 |
| BstNI | CCWGG | 7 cut(s) | 684, 862, 1063, 1130, 1275, 1507, 2078 |
| BstNSI | RCATGY | 6 cut(s) | 955, 1955, 2136, 3404, 3659, 4081 |
| BstSCI | CCNGG | 8 cut(s) | 252, 682, 860, 1061, 1128, 1273, 1505, 2076 |
| BstSFI | CTRYAG | 3 cut(s) | 1641, 2048, 2689 |
| BstSNI | TACGTA | 1 cut(s) | 3576 |
| BstUI | CGCG | 1 cut(s) | 193 |
| BstV2I | GAAGAC | 3 cut(s) | 2352, 3146, 3355 |
| BstX2I | RGATCY | 6 cut(s) | 41, 429, 1176, 1270, 2324, 2446 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1050, 2071 |
| BstYI | RGATCY | 6 cut(s) | 41, 429, 1176, 1270, 2324, 2446 |
| BstZ17I | GTATAC | 1 cut(s) | 2679 |
| Bsu15I | ATCGAT | 1 cut(s) | 464 |
| BsuTUI | ATCGAT | 1 cut(s) | 464 |
| BtgI | CCRYGG | 4 cut(s) | 11, 191, 3343, 3948 |
| BtgZI | GCGATG | 1 cut(s) | 1923 |
| BtsI | GCAGTG | 3 cut(s) | 236, 2746, 2755 |
| BveI | ACCTGC | 1 cut(s) | 1847 |
| Cac8I | GCNNGC | 9 cut(s) | 953, 1010, 1265, 1938, 2737, 3402, 3523, 3810, 3814 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1889 |
| CciI | TCATGA | 2 cut(s) | 1111, 2767 |
| CfoI | GCGC | 4 cut(s) | 869, 1193, 2043, 2778 |
| Cfr10I | RCCGGY | 1 cut(s) | 506 |
| Cfr13I | GGNCC | 9 cut(s) | 355, 509, 2074, 2197, 2514, 3074, 3340, 3524, 3962 |
| Cfr42I | CCGCGG | 1 cut(s) | 194 |
| ClaI | ATCGAT | 1 cut(s) | 464 |
| CseI | GACGC | 5 cut(s) | 15, 828, 1640, 3406, 3979 |
| CspAI | ACCGGT | 1 cut(s) | 506 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 4240, 4275 |
| DraI | TTTAAA | 3 cut(s) | 436, 588, 2292 |
| EaeI | YGGCCR | 2 cut(s) | 1098, 2272 |
| Ecl136II | GAGCTC | 1 cut(s) | 2454 |
| Eco105I | TACGTA | 1 cut(s) | 3576 |
| Eco130I | CCWWGG | 9 cut(s) | 11, 288, 450, 2517, 2565, 3067, 3343, 3921, 3948 |
| Eco24I | GRGCYC | 1 cut(s) | 2456 |
| Eco31I | GGTCTC | 1 cut(s) | 2841 |
| Eco47I | GGWCC | 3 cut(s) | 509, 2197, 3074 |
| Eco53kI | GAGCTC | 1 cut(s) | 2454 |
| Eco57I | CTGAAG | 4 cut(s) | 38, 443, 1941, 2874 |
| Eco72I | CACGTG | 1 cut(s) | 4211 |
| Eco88I | CYCGRG | 1 cut(s) | 45 |
| EcoICRI | GAGCTC | 1 cut(s) | 2454 |
| EcoO109I | RGGNCCY | 2 cut(s) | 355, 3074 |
| EcoRI | GAATTC | 1 cut(s) | 2552 |
| EcoRII | CCWGG | 7 cut(s) | 682, 860, 1061, 1128, 1273, 1505, 2076 |
| EcoT14I | CCWWGG | 9 cut(s) | 11, 288, 450, 2517, 2565, 3067, 3343, 3921, 3948 |
| EcoT22I | ATGCAT | 4 cut(s) | 603, 1831, 2982, 3433 |
| EcoT38I | GRGCYC | 1 cut(s) | 2456 |
| ErhI | CCWWGG | 9 cut(s) | 11, 288, 450, 2517, 2565, 3067, 3343, 3921, 3948 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 416, 448, 1050, 1082 |
| FaqI | GGGAC | 6 cut(s) | 632, 720, 803, 831, 1450, 2685 |
| FauI | CCCGC | 2 cut(s) | 179, 649 |
| FauNDI | CATATG | 1 cut(s) | 3793 |
| FbaI | TGATCA | 2 cut(s) | 3304, 4129 |
| FblI | GTMKAC | 2 cut(s) | 2678, 2993 |
| FriOI | GRGCYC | 1 cut(s) | 2456 |
| FspBI | CTAG | 8 cut(s) | 342, 1535, 1991, 2531, 2972, 3135, 3669, 3675 |
| FspI | TGCGCA | 1 cut(s) | 868 |
| GlaI | GCGC | 4 cut(s) | 868, 1192, 2042, 2777 |
| GsaI | CCCAGC | 2 cut(s) | 1305, 2672 |
| GsuI | CTGGAG | 7 cut(s) | 318, 393, 705, 1296, 2462, 2609, 3657 |
| HaeII | RGCGCY | 1 cut(s) | 1194 |
| HapII | CCGG | 2 cut(s) | 254, 507 |
| HgaI | GACGC | 5 cut(s) | 15, 828, 1640, 3406, 3979 |
| HhaI | GCGC | 4 cut(s) | 869, 1193, 2043, 2778 |
| Hin6I | GCGC | 4 cut(s) | 867, 1191, 2041, 2776 |
| HinP1I | GCGC | 4 cut(s) | 867, 1191, 2041, 2776 |
| HincII | GTYRAC | 1 cut(s) | 2994 |
| HindII | GTYRAC | 1 cut(s) | 2994 |
| HindIII | AAGCTT | 3 cut(s) | 618, 2256, 2286 |
| HpaII | CCGG | 2 cut(s) | 254, 507 |
| HphI | GGTGA | 3 cut(s) | 863, 2150, 3893 |
| Hpy166II | GTNNAC | 7 cut(s) | 759, 1652, 2679, 2994, 4216, 4308, 4347 |
| Hpy8I | GTNNAC | 7 cut(s) | 759, 1652, 2679, 2994, 4216, 4308, 4347 |
| Hpy99I | CGWCG | 3 cut(s) | 98, 214, 549 |
| HpyAV | CCTTC | 9 cut(s) | 148, 177, 793, 1259, 1401, 2115, 2957, 4079, 4251 |
| HpyCH4IV | ACGT | 7 cut(s) | 547, 1561, 1625, 1792, 3575, 3703, 4210 |
| HpySE526I | ACGT | 7 cut(s) | 547, 1561, 1625, 1792, 3575, 3703, 4210 |
| HspAI | GCGC | 4 cut(s) | 867, 1191, 2041, 2776 |
| Ksp22I | TGATCA | 2 cut(s) | 3304, 4129 |
| KspI | CCGCGG | 1 cut(s) | 194 |
| LguI | GCTCTTC | 1 cut(s) | 1605 |
| MaeI | CTAG | 8 cut(s) | 342, 1535, 1991, 2531, 2972, 3135, 3669, 3675 |
| MaeII | ACGT | 7 cut(s) | 547, 1561, 1625, 1792, 3575, 3703, 4210 |
| MaeIII | GTNAC | 8 cut(s) | 325, 965, 1036, 1660, 2162, 2277, 2782, 3332 |
| MfeI | CAATTG | 1 cut(s) | 4322 |
| MflI | RGATCY | 6 cut(s) | 41, 429, 1176, 1270, 2324, 2446 |
| MhlI | GDGCHC | 3 cut(s) | 190, 1459, 2456 |
| MlsI | TGGCCA | 2 cut(s) | 1100, 2274 |
| MluNI | TGGCCA | 2 cut(s) | 1100, 2274 |
| MlyI | GAGTC | 6 cut(s) | 887, 1357, 1432, 3648, 4109, 4168 |
| Mox20I | TGGCCA | 2 cut(s) | 1100, 2274 |
| Mph1103I | ATGCAT | 4 cut(s) | 603, 1831, 2982, 3433 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1417, 2178, 2893 |
| MscI | TGGCCA | 2 cut(s) | 1100, 2274 |
| MslI | CAYNNNNRTG | 5 cut(s) | 717, 1116, 1209, 2107, 4047 |
| Msp20I | TGGCCA | 2 cut(s) | 1100, 2274 |
| MspA1I | CMGCKG | 6 cut(s) | 193, 296, 413, 656, 2718, 3808 |
| MspI | CCGG | 2 cut(s) | 254, 507 |
| MspR9I | CCNGG | 8 cut(s) | 254, 684, 862, 1063, 1130, 1275, 1507, 2078 |
| MunI | CAATTG | 1 cut(s) | 4322 |
| Mva1269I | GAATGC | 4 cut(s) | 207, 601, 3287, 3597 |
| MvaI | CCWGG | 7 cut(s) | 684, 862, 1063, 1130, 1275, 1507, 2078 |
| MvnI | CGCG | 1 cut(s) | 193 |
| NciI | CCSGG | 1 cut(s) | 254 |
| NcoI | CCATGG | 3 cut(s) | 11, 3343, 3948 |
| NdeI | CATATG | 1 cut(s) | 3793 |
| NlaIV | GGNNCC | 6 cut(s) | 112, 1247, 1482, 1879, 2326, 3964 |
| NmuCI | GTSAC | 2 cut(s) | 965, 2162 |
| NsbI | TGCGCA | 1 cut(s) | 868 |
| NsiI | ATGCAT | 4 cut(s) | 603, 1831, 2982, 3433 |
| NspI | RCATGY | 6 cut(s) | 955, 1955, 2136, 3404, 3659, 4081 |
| NspV | TTCGAA | 3 cut(s) | 610, 3412, 4121 |
| PaeI | GCATGC | 2 cut(s) | 955, 3404 |
| PaeR7I | CTCGAG | 1 cut(s) | 45 |
| PagI | TCATGA | 2 cut(s) | 1111, 2767 |
| PaqCI | CACCTGC | 1 cut(s) | 1847 |
| PciI | ACATGT | 1 cut(s) | 1951 |
| PciSI | GCTCTTC | 1 cut(s) | 1605 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 4118 |
| PctI | GAATGC | 4 cut(s) | 207, 601, 3287, 3597 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1417, 2178, 2893 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2523, 4155 |
| PfoI | TCCNGGA | 3 cut(s) | 252, 682, 1273 |
| PinAI | ACCGGT | 1 cut(s) | 506 |
| PleI | GAGTC | 6 cut(s) | 886, 1356, 1432, 3647, 4109, 4167 |
| PmaCI | CACGTG | 1 cut(s) | 4211 |
| PmlI | CACGTG | 1 cut(s) | 4211 |
| PpsI | GAGTC | 6 cut(s) | 886, 1356, 1432, 3647, 4109, 4167 |
| Ppu21I | YACGTR | 5 cut(s) | 1562, 1793, 3576, 3704, 4211 |
| PpuMI | RGGWCCY | 1 cut(s) | 3074 |
| PscI | ACATGT | 1 cut(s) | 1951 |
| PshBI | ATTAAT | 1 cut(s) | 3323 |
| PsiI | TTATAA | 1 cut(s) | 2262 |
| Psp124BI | GAGCTC | 1 cut(s) | 2456 |
| Psp5II | RGGWCCY | 1 cut(s) | 3074 |
| Psp6I | CCWGG | 7 cut(s) | 682, 860, 1061, 1128, 1273, 1505, 2076 |
| PspCI | CACGTG | 1 cut(s) | 4211 |
| PspFI | CCCAGC | 2 cut(s) | 1301, 2668 |
| PspGI | CCWGG | 7 cut(s) | 682, 860, 1061, 1128, 1273, 1505, 2076 |
| PspN4I | GGNNCC | 6 cut(s) | 112, 1247, 1482, 1879, 2326, 3964 |
| PspPI | GGNCC | 9 cut(s) | 355, 509, 2074, 2197, 2514, 3074, 3340, 3524, 3962 |
| PspPPI | RGGWCCY | 1 cut(s) | 3074 |
| PstI | CTGCAG | 2 cut(s) | 2052, 2693 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1889 |
| PsuI | RGATCY | 6 cut(s) | 41, 429, 1176, 1270, 2324, 2446 |
| PvuII | CAGCTG | 3 cut(s) | 413, 2718, 3808 |
| RseI | CAYNNNNRTG | 5 cut(s) | 717, 1116, 1209, 2107, 4047 |
| SacI | GAGCTC | 1 cut(s) | 2456 |
| SacII | CCGCGG | 1 cut(s) | 194 |
| SalI | GTCGAC | 1 cut(s) | 2992 |
| SapI | GCTCTTC | 1 cut(s) | 1605 |
| Sau96I | GGNCC | 9 cut(s) | 355, 509, 2074, 2197, 2514, 3074, 3340, 3524, 3962 |
| SchI | GAGTC | 6 cut(s) | 887, 1357, 1432, 3648, 4109, 4168 |
| ScrFI | CCNGG | 8 cut(s) | 254, 684, 862, 1063, 1130, 1275, 1507, 2078 |
| SduI | GDGCHC | 3 cut(s) | 190, 1459, 2456 |
| SfcI | CTRYAG | 3 cut(s) | 1641, 2048, 2689 |
| Sfr274I | CTCGAG | 1 cut(s) | 45 |
| Sfr303I | CCGCGG | 1 cut(s) | 194 |
| SfuI | TTCGAA | 3 cut(s) | 610, 3412, 4121 |
| SgrBI | CCGCGG | 1 cut(s) | 194 |
| SinI | GGWCC | 3 cut(s) | 509, 2197, 3074 |
| SlaI | CTCGAG | 1 cut(s) | 45 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 717, 1116, 1209, 2107, 4047 |
| SmlI | CTYRAG | 4 cut(s) | 45, 2657, 3392, 4301 |
| SmoI | CTYRAG | 4 cut(s) | 45, 2657, 3392, 4301 |
| SnaBI | TACGTA | 1 cut(s) | 3576 |
| SpeI | ACTAGT | 1 cut(s) | 2530 |
| SphI | GCATGC | 2 cut(s) | 955, 3404 |
| SsiI | CCGC | 8 cut(s) | 108, 172, 191, 193, 294, 656, 949, 3080 |
| SspI | AATATT | 2 cut(s) | 2909, 3473 |
| SspMI | CTAG | 8 cut(s) | 342, 1535, 1991, 2531, 2972, 3135, 3669, 3675 |
| SstI | GAGCTC | 1 cut(s) | 2456 |
| StyD4I | CCNGG | 8 cut(s) | 252, 682, 860, 1061, 1128, 1273, 1505, 2076 |
| StyI | CCWWGG | 9 cut(s) | 11, 288, 450, 2517, 2565, 3067, 3343, 3921, 3948 |
| TaiI | ACGT | 7 cut(s) | 550, 1564, 1628, 1795, 3578, 3706, 4213 |
| TatI | WGTACW | 3 cut(s) | 756, 1891, 2941 |
| TauI | GCSGC | 2 cut(s) | 111, 296 |
| TseFI | GTSAC | 2 cut(s) | 965, 2162 |
| Tsp45I | GTSAC | 2 cut(s) | 965, 2162 |
| TspGWI | ACGGA | 5 cut(s) | 227, 1880, 2072, 2113, 3790 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2523, 4155 |
| VpaK11BI | GGWCC | 3 cut(s) | 509, 2197, 3074 |
| VspI | ATTAAT | 1 cut(s) | 3323 |
| XapI | RAATTY | 7 cut(s) | 247, 589, 1753, 2354, 2396, 2552, 3260 |
| XceI | RCATGY | 6 cut(s) | 955, 1955, 2136, 3404, 3659, 4081 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2924 |
| XhoI | CTCGAG | 1 cut(s) | 45 |
| XmiI | GTMKAC | 2 cut(s) | 2678, 2993 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1417, 2178, 2893 |
| XspI | CTAG | 8 cut(s) | 342, 1535, 1991, 2531, 2972, 3135, 3669, 3675 |
| Zsp2I | ATGCAT | 4 cut(s) | 603, 1831, 2982, 3433 |