Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0011317

Physical Location & Seq

Genomic Coordinates Forward (+)

3905264 .. 3906814

Gene Structure 1551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g03420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1551 bp

ATGACTTTAGAAGCAAATGCATATTCTCCAAGAAAATTGATAACAGAAGTTAGCATGGACTCCGGAGATTTGACAGAAGCTGTACCAAATTCCTCTGGTATTGAAAGCTCTGCAGTTTGCAAATTGCCTGCAACAAACGGACATGTAGTTCAAACTGTTGCTGAACCAATCTCTTCTAAGCTCGCTGCAATACATCATGTTTCTCAAGCTATTAAATCTCTCAGATGGATGCGCCAACTGCAAACTATTGAATCCAAGTTGATGGACCAGGAGAGTGAAACCCATGATAGGCCACCTTCATCTGTTAATCTTTCTATTTGTGCATGTGGTGATGCTGACTGTATCGAAGTGTGTGACATTAGAGAATGGCTTCCGACATCAACATTGGACCACAAGGTGTGGAAACTTGTTCTTTTGCTTGGAGAGTCGTATTTGGCACTTGGGCAAGCTTATAAGGAGGATGGTCAGTTGCATCAAGCATTGAAGGTTGTAGAATTGGCCTGTTCTGTATATGGATCAATGCCTCAGCATCTGGAAGACACAAAATTCATTTCGTCCATGAATAGTTTCTTTTCATCACCGATAAAATTCGATTATACAAATAAAAGGACTACATCATCTAATAGTGGTCAGGAAGATCTGAGCTCCAGCTCCACCCATGGTTGTCTTTCTTTCGAGCAGTTCTCATCCATCTACCTCTTCTGGGCCAAGGCACGGACACTGGTTGGAGATGTTTATGTTGAATTCCATTTGGCTAAGGATAGTACAATCTCTCCACCAGCGGAGAGAAAATATTCTATTAGAGAGTTGAAAATATCATCTGAGGTTGTCAAAGAAGTTAAAAGGCTCAAGAAGAAGTTGGGGCAGTATACACAAAGCTGCAGTTCATGTTCTCTAGTAAATTGTAGCTGCCAGAGTGATAGGGCAAGCAGTGGTAGCAGTGCAAGTAGTAGTAGTGGTGATATGGGCTCAGTAAGTTCTGGCAGGAAATACAGTAAAAGACCATATGCTAAGAGCAATGCCTTCCCCCTTTTAAGAGACCCAGAAGATGATAATCTTTGTTTAAAAATGGAGAGTGGAAAAGTTTCTGATCGCGGATATCTACACCAAAAGAGAAATGGCGAAACCATAGTACAATCTTCGAATACAGATCAGCTTGTAGTGAAACACATGGAATCTGGCAATTTAGGAGTGGATGACATGGGGCCAATACTGGCCTCCCAATCTAATGGTTCTCTGAGAGAAACAATGAAAGTGAAAAATGGAGGCATATTCAAGTACCTTGGTGGTCCTGCAGTTGCAGATGCTGAAAACAAACTTTCAGATGCCCTATGCTGTTATGAAGAAGCTTCAAAGGCATTAGGTGGTCTTCCATCCAGTTCTGCAGAACTACAATCTATAATGAAAAAGAAAGAGTGGGTATGCAATGAACTGGATCGAAACAGGCTTGAAAGGAAAGAACTAAAAAAAGCTGAATTTGCTCTTGTAGATGCTATAAAAGCATTTAGAGAAGTCTCTGATCGATCTTTGATTATACCAATATCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

517

Amino Acids

56.68

Weight (kDa)

6.62

Isoelectric Point (pI)

47.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35660
fragaria_vesca	FvH4_2g11773
malus_domestica	MD05G1041500.v1.1 MD10G1047900.v1.1
prunus_persica	Prupe.8G057200_v2.0.a1 Prupe.8G057200_v2.0.a1 Prupe.8G057200_v2.0.a1
pyrus_communis	pycom05g03420 pycom10g03390
rosa_chinensis	RchiOBHm_Chr6g0272031
rosa_laevigata	RLG00000013708
rosa_multiflora	Rmu_sc0023166.1_g000001
rosa_roxburghii	Rroxscaffold_173G00434950 Rroxscaffold_7G00196840
rosa_rugosa	Rorug06G0065000
rosa_samantha	Rh6AG182500 Rh6BG184700 Rh6CG183600 Rh6DG175200
rosa_wichuraiana	Rw6G015700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	453
AccI	GTMKAC	1 cut(s)	869
AccII	CGCG	1 cut(s)	1095
AccIII	TCCGGA	1 cut(s)	62
AciI	CCGC	2 cut(s)	782, 1095
AclWI	GGATC	2 cut(s)	523, 1443
AcsI	RAATTY	5 cut(s)	88, 545, 587, 743, 1475
AdeI	CACNNNGTG	1 cut(s)	397
AfaI	GTAC	4 cut(s)	84, 766, 1134, 1280
AfiI	CCNNNNNNNGG	3 cut(s)	288, 703, 714
AflIII	ACRYGT	1 cut(s)	142
AgsI	TTSAA	9 cut(s)	104, 152, 251, 484, 743, 811, 1276, 1353, 1451
AjnI	CCWGG	1 cut(s)	267
AloI	GAACNNNNNNTCC	2 cut(s)	132, 164
Alw21I	GWGCWC	1 cut(s)	647
Alw26I	GTCTC	2 cut(s)	1032, 1519
AlwI	GGATC	2 cut(s)	523, 1443
AlwNI	CAGNNNCTG	3 cut(s)	80, 532, 1307
Aor13HI	TCCGGA	1 cut(s)	62
AoxI	GGCC	5 cut(s)	290, 498, 705, 1205, 1215
ApeKI	GCWGC	3 cut(s)	185, 879, 909
ApoI	RAATTY	5 cut(s)	88, 545, 587, 743, 1475
Asp700I	GAANNNNTTC	4 cut(s)	369, 566, 793, 1084
AspLEI	GCGC	1 cut(s)	234
AspS9I	GGNCC	5 cut(s)	265, 388, 705, 1205, 1289
AsuHPI	GGTGA	3 cut(s)	341, 570, 971
AsuII	TTCGAA	1 cut(s)	1142
AvaII	GGWCC	3 cut(s)	265, 388, 1289
BanII	GRGCYC	2 cut(s)	647, 971
BbsI	GAAGAC	2 cut(s)	543, 1361
Bbv12I	GWGCWC	1 cut(s)	647
BbvCI	CCTCAGC	1 cut(s)	525
BbvI	GCAGC	3 cut(s)	172, 866, 896
BccI	CCATC	5 cut(s)	219, 256, 455, 698, 1381
BciT130I	CCWGG	1 cut(s)	269
BcoDI	GTCTC	2 cut(s)	1032, 1519
BfaI	CTAG	1 cut(s)	896
BfmI	CTRYAG	4 cut(s)	111, 880, 1293, 1383
BglII	AGATCT	1 cut(s)	637
BisI	GCNGC	3 cut(s)	186, 880, 910
BlsI	GCNGC	3 cut(s)	187, 881, 911
Bme1390I	CCNGG	1 cut(s)	269
Bme18I	GGWCC	3 cut(s)	265, 388, 1289
BmgT120I	GGNCC	5 cut(s)	265, 388, 705, 1205, 1289
BmiI	GGNNCC	1 cut(s)	1206
BmrFI	CCNGG	1 cut(s)	269
BmsI	GCATC	7 cut(s)	219, 322, 481, 538, 1294, 1315, 1480
BpiI	GAAGAC	2 cut(s)	543, 1361
BplI	GAGNNNNNCTC	2 cut(s)	668, 700
BpmI	CTGGAG	1 cut(s)	631
Bpu10I	CCTNAGC	2 cut(s)	525, 756
Bpu14I	TTCGAA	1 cut(s)	1142
BpuEI	CTTGAG	2 cut(s)	189, 833
Bsa29I	ATCGAT	1 cut(s)	1522
BsaBI	GATNNNNATC	1 cut(s)	1053
BsaI	GGTCTC	1 cut(s)	1032
BsaJI	CCNNGG	3 cut(s)	658, 708, 1282
BsaWI	WCCGGW	1 cut(s)	62
BsaXI	ACNNNNNCTCC	2 cut(s)	757, 787
Bsc4I	CCNNNNNNNGG	3 cut(s)	288, 703, 714
Bse1I	ACTGG	4 cut(s)	726, 1218, 1377, 1437
Bse3DI	GCAATG	2 cut(s)	1024, 1432
Bse8I	GATNNNNATC	1 cut(s)	1053
BseAI	TCCGGA	1 cut(s)	62
BseBI	CCWGG	1 cut(s)	269
BseCI	ATCGAT	1 cut(s)	1522
BseDI	CCNNGG	3 cut(s)	658, 708, 1282
BseGI	GGATG	5 cut(s)	234, 466, 686, 1201, 1373
BseJI	GATNNNNATC	1 cut(s)	1053
BseLI	CCNNNNNNNGG	3 cut(s)	288, 703, 714
BseMI	GCAATG	2 cut(s)	1024, 1432
BseMII	CTCAG	6 cut(s)	235, 539, 632, 813, 984, 1229
BseNI	ACTGG	4 cut(s)	726, 1218, 1377, 1437
BseXI	GCAGC	3 cut(s)	172, 866, 896
Bsh1236I	CGCG	1 cut(s)	1095
BshFI	GGCC	5 cut(s)	292, 500, 707, 1207, 1217
BshVI	ATCGAT	1 cut(s)	1522
BsiHKAI	GWGCWC	1 cut(s)	647
BsiSI	CCGG	1 cut(s)	63
BslI	CCNNNNNNNGG	3 cut(s)	288, 703, 714
BsmAI	GTCTC	2 cut(s)	1032, 1519
BsnI	GGCC	5 cut(s)	292, 500, 707, 1207, 1217
Bso31I	GGTCTC	1 cut(s)	1032
Bsp119I	TTCGAA	1 cut(s)	1142
Bsp1286I	GDGCHC	2 cut(s)	647, 971
Bsp13I	TCCGGA	1 cut(s)	62
Bsp143I	GATC	7 cut(s)	515, 637, 1090, 1150, 1435, 1519, 1523
Bsp19I	CCATGG	1 cut(s)	658
BspACI	CCGC	2 cut(s)	782, 1095
BspANI	GGCC	5 cut(s)	292, 500, 707, 1207, 1217
BspCNI	CTCAG	6 cut(s)	234, 538, 633, 814, 983, 1230
BspDI	ATCGAT	1 cut(s)	1522
BspEI	TCCGGA	1 cut(s)	62
BspFNI	CGCG	1 cut(s)	1095
BspLI	GGNNCC	1 cut(s)	1206
BspMAI	CTGCAG	4 cut(s)	115, 884, 1297, 1387
BspPI	GGATC	2 cut(s)	523, 1443
BspT104I	TTCGAA	1 cut(s)	1142
BspTNI	GGTCTC	1 cut(s)	1032
BsrDI	GCAATG	2 cut(s)	1024, 1432
BsrI	ACTGG	4 cut(s)	726, 1218, 1377, 1437
BssECI	CCNNGG	3 cut(s)	658, 708, 1282
BssMI	GATC	7 cut(s)	515, 637, 1090, 1150, 1435, 1519, 1523
BssNAI	GTATAC	1 cut(s)	870
BssT1I	CCWWGG	3 cut(s)	658, 708, 1282
Bst1107I	GTATAC	1 cut(s)	870
Bst2UI	CCWGG	1 cut(s)	269
Bst4CI	ACNGT	3 cut(s)	157, 341, 995
Bst6I	CTCTTC	2 cut(s)	178, 704
BstBI	TTCGAA	1 cut(s)	1142
BstC8I	GCNNGC	4 cut(s)	129, 183, 447, 928
BstDEI	CTNAG	9 cut(s)	177, 221, 525, 641, 756, 822, 970, 1011, 1238
BstDSI	CCRYGG	1 cut(s)	658
BstF5I	GGATG	5 cut(s)	234, 466, 686, 1201, 1373
BstFNI	CGCG	1 cut(s)	1095
BstHHI	GCGC	1 cut(s)	234
BstKTI	GATC	7 cut(s)	518, 640, 1093, 1153, 1438, 1522, 1526
BstMAI	GTCTC	2 cut(s)	1032, 1519
BstMBI	GATC	7 cut(s)	515, 637, 1090, 1150, 1435, 1519, 1523
BstMWI	GCNNNNNNNGC	5 cut(s)	238, 936, 1355, 1478, 1499
BstNI	CCWGG	1 cut(s)	269
BstNSI	RCATGY	2 cut(s)	146, 327
BstSCI	CCNGG	1 cut(s)	267
BstSFI	CTRYAG	4 cut(s)	111, 880, 1293, 1383
BstUI	CGCG	1 cut(s)	1095
BstV1I	GCAGC	3 cut(s)	172, 866, 896
BstV2I	GAAGAC	2 cut(s)	543, 1361
BstX2I	RGATCY	1 cut(s)	637
BstXI	CCANNNNNNTGG	2 cut(s)	262, 1229
BstYI	RGATCY	1 cut(s)	637
BstZ17I	GTATAC	1 cut(s)	870
Bsu15I	ATCGAT	1 cut(s)	1522
BsuRI	GGCC	5 cut(s)	292, 500, 707, 1207, 1217
BsuTUI	ATCGAT	1 cut(s)	1522
BtgI	CCRYGG	1 cut(s)	658
BtsCI	GGATG	5 cut(s)	234, 466, 686, 1201, 1373
BtsI	GCAGTG	2 cut(s)	937, 946
BtsIMutI	CAGTG	3 cut(s)	719, 937, 946
Cac8I	GCNNGC	4 cut(s)	129, 183, 447, 928
CaiI	CAGNNNCTG	3 cut(s)	80, 532, 1307
CfoI	GCGC	1 cut(s)	234
Cfr13I	GGNCC	5 cut(s)	265, 388, 705, 1205, 1289
ClaI	ATCGAT	1 cut(s)	1522
Csp6I	GTAC	4 cut(s)	83, 765, 1133, 1279
CviQI	GTAC	4 cut(s)	83, 765, 1133, 1279
DdeI	CTNAG	9 cut(s)	177, 221, 525, 641, 756, 822, 970, 1011, 1238
DpnI	GATC	7 cut(s)	517, 639, 1092, 1152, 1437, 1521, 1525
DpnII	GATC	7 cut(s)	515, 637, 1090, 1150, 1435, 1519, 1523
DraI	TTTAAA	1 cut(s)	1065
DraIII	CACNNNGTG	1 cut(s)	397
Eam1104I	CTCTTC	2 cut(s)	178, 704
EarI	CTCTTC	2 cut(s)	178, 704
Ecl136II	GAGCTC	1 cut(s)	645
Eco130I	CCWWGG	3 cut(s)	658, 708, 1282
Eco24I	GRGCYC	2 cut(s)	647, 971
Eco31I	GGTCTC	1 cut(s)	1032
Eco32I	GATATC	1 cut(s)	1100
Eco47I	GGWCC	3 cut(s)	265, 388, 1289
Eco53kI	GAGCTC	1 cut(s)	645
EcoICRI	GAGCTC	1 cut(s)	645
EcoRI	GAATTC	1 cut(s)	743
EcoRII	CCWGG	1 cut(s)	267
EcoRV	GATATC	1 cut(s)	1100
EcoT14I	CCWWGG	3 cut(s)	658, 708, 1282
EcoT22I	ATGCAT	1 cut(s)	22
EcoT38I	GRGCYC	2 cut(s)	647, 971
ErhI	CCWWGG	3 cut(s)	658, 708, 1282
FauNDI	CATATG	1 cut(s)	1006
FblI	GTMKAC	1 cut(s)	869
Fnu4HI	GCNGC	3 cut(s)	186, 880, 910
FokI	GGATG	5 cut(s)	241, 473, 673, 1208, 1360
FriOI	GRGCYC	2 cut(s)	647, 971
Fsp4HI	GCNGC	3 cut(s)	186, 880, 910
FspBI	CTAG	1 cut(s)	896
GlaI	GCGC	1 cut(s)	233
GluI	GCNGC	3 cut(s)	186, 880, 910
GsuI	CTGGAG	1 cut(s)	631
HaeIII	GGCC	5 cut(s)	292, 500, 707, 1207, 1217
HapII	CCGG	1 cut(s)	63
HhaI	GCGC	1 cut(s)	234
Hin6I	GCGC	1 cut(s)	232
HinP1I	GCGC	1 cut(s)	232
HindIII	AAGCTT	2 cut(s)	447, 1347
HinfI	GANTC	4 cut(s)	59, 251, 425, 1175
HpaII	CCGG	1 cut(s)	63
HphI	GGTGA	3 cut(s)	341, 570, 971
Hpy166II	GTNNAC	1 cut(s)	870
Hpy188I	TCNGA	8 cut(s)	224, 375, 642, 823, 1090, 1239, 1324, 1519
Hpy188III	TCNNGA	4 cut(s)	63, 533, 632, 850
Hpy8I	GTNNAC	1 cut(s)	870
HpyAV	CCTTC	3 cut(s)	306, 478, 1033
HpyCH4III	ACNGT	3 cut(s)	157, 341, 995
HpyF10VI	GCNNNNNNNGC	5 cut(s)	238, 936, 1355, 1478, 1499
HpyF3I	CTNAG	9 cut(s)	177, 221, 525, 641, 756, 822, 970, 1011, 1238
HspAI	GCGC	1 cut(s)	232
Kpn2I	TCCGGA	1 cut(s)	62
Kzo9I	GATC	7 cut(s)	515, 637, 1090, 1150, 1435, 1519, 1523
LmnI	GCTCC	2 cut(s)	650, 656
Lsp1109I	GCAGC	3 cut(s)	172, 866, 896
LweI	GCATC	7 cut(s)	219, 322, 481, 538, 1294, 1315, 1480
MaeI	CTAG	1 cut(s)	896
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	7 cut(s)	517, 639, 1092, 1152, 1437, 1521, 1525
MboI	GATC	7 cut(s)	515, 637, 1090, 1150, 1435, 1519, 1523
MboII	GAAGA	9 cut(s)	165, 548, 647, 691, 865, 1058, 1131, 1355, 1361
MflI	RGATCY	1 cut(s)	637
MhlI	GDGCHC	2 cut(s)	647, 971
MlyI	GAGTC	2 cut(s)	53, 434
MmeI	TCCRAC	2 cut(s)	398, 706
MnlI	CCTC	7 cut(s)	103, 451, 534, 707, 817, 1228, 1259
Mph1103I	ATGCAT	1 cut(s)	22
MroI	TCCGGA	1 cut(s)	62
MroXI	GAANNNNTTC	4 cut(s)	369, 566, 793, 1084
MseI	TTAA	5 cut(s)	213, 306, 840, 1034, 1064
MspA1I	CMGCKG	1 cut(s)	782
MspI	CCGG	1 cut(s)	63
MspR9I	CCNGG	1 cut(s)	269
MvaI	CCWGG	1 cut(s)	269
MvnI	CGCG	1 cut(s)	1095
MwoI	GCNNNNNNNGC	5 cut(s)	238, 936, 1355, 1478, 1499
NcoI	CCATGG	1 cut(s)	658
NdeI	CATATG	1 cut(s)	1006
NdeII	GATC	7 cut(s)	515, 637, 1090, 1150, 1435, 1519, 1523
NlaIV	GGNNCC	1 cut(s)	1206
NmuCI	GTSAC	1 cut(s)	353
NsiI	ATGCAT	1 cut(s)	22
NspI	RCATGY	2 cut(s)	146, 327
NspV	TTCGAA	1 cut(s)	1142
PciI	ACATGT	1 cut(s)	142
PdmI	GAANNNNTTC	4 cut(s)	369, 566, 793, 1084
PfeI	GAWTC	2 cut(s)	251, 1175
PkrI	GCNGC	3 cut(s)	187, 881, 911
PleI	GAGTC	2 cut(s)	53, 433
PpsI	GAGTC	2 cut(s)	53, 433
PscI	ACATGT	1 cut(s)	142
PsiI	TTATAA	1 cut(s)	453
Psp124BI	GAGCTC	1 cut(s)	647
Psp6I	CCWGG	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	1 cut(s)	1206
PspPI	GGNCC	5 cut(s)	265, 388, 705, 1205, 1289
PstI	CTGCAG	4 cut(s)	115, 884, 1297, 1387
PstNI	CAGNNNCTG	3 cut(s)	80, 532, 1307
PsuI	RGATCY	1 cut(s)	637
RsaI	GTAC	4 cut(s)	84, 766, 1134, 1280
RsaNI	GTAC	4 cut(s)	83, 765, 1133, 1279
SacI	GAGCTC	1 cut(s)	647
SaqAI	TTAA	5 cut(s)	213, 306, 840, 1034, 1064
SatI	GCNGC	3 cut(s)	186, 880, 910
Sau3AI	GATC	7 cut(s)	515, 637, 1090, 1150, 1435, 1519, 1523
Sau96I	GGNCC	5 cut(s)	265, 388, 705, 1205, 1289
SchI	GAGTC	2 cut(s)	53, 434
ScrFI	CCNGG	1 cut(s)	269
SduI	GDGCHC	2 cut(s)	647, 971
SfaNI	GCATC	7 cut(s)	219, 322, 481, 538, 1294, 1315, 1480
SfcI	CTRYAG	4 cut(s)	111, 880, 1293, 1383
SfuI	TTCGAA	1 cut(s)	1142
SinI	GGWCC	3 cut(s)	265, 388, 1289
SmlI	CTYRAG	2 cut(s)	204, 848
SmoI	CTYRAG	2 cut(s)	204, 848
SsiI	CCGC	2 cut(s)	782, 1095
SspI	AATATT	1 cut(s)	794
SspMI	CTAG	1 cut(s)	896
SstI	GAGCTC	1 cut(s)	647
StyD4I	CCNGG	1 cut(s)	267
StyI	CCWWGG	3 cut(s)	658, 708, 1282
TaaI	ACNGT	3 cut(s)	157, 341, 995
TaqI	TCGA	6 cut(s)	345, 591, 675, 1142, 1438, 1522
TatI	WGTACW	2 cut(s)	764, 1132
TfiI	GAWTC	2 cut(s)	251, 1175
Tru1I	TTAA	5 cut(s)	213, 306, 840, 1034, 1064
Tru9I	TTAA	5 cut(s)	213, 306, 840, 1034, 1064
TscAI	CASTG	3 cut(s)	726, 937, 946
TseFI	GTSAC	1 cut(s)	353
TseI	GCWGC	3 cut(s)	185, 879, 909
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	9 cut(s)	288, 538, 564, 575, 876, 1265, 1356, 1418, 1443
TspGWI	ACGGA	2 cut(s)	153, 730
TspRI	CASTG	3 cut(s)	726, 937, 946
VpaK11BI	GGWCC	3 cut(s)	265, 388, 1289
XapI	RAATTY	5 cut(s)	88, 545, 587, 743, 1475
XceI	RCATGY	2 cut(s)	146, 327
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1115
XmiI	GTMKAC	1 cut(s)	869
XmnI	GAANNNNTTC	4 cut(s)	369, 566, 793, 1084
XspI	CTAG	1 cut(s)	896
Zsp2I	ATGCAT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.