Rorug06G0065000

transcription, DNA-templated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0011317
Physical Location & Seq
Forward (+)
8613571 .. 8614131
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0065000.1

Sequence Viewer

Length: 561 bp
ATGGTAGATTATGTTTTGTGCAGAGAAGGTGCTGGTGATATCAATGACATTGAAGAAGACGACGGCAATATTATTGTGGATAATCAGGAAGGCGTTGATCAAGATAATGATGGTGATGAAGGCAATCATGAGAATGATCACGAGGAAGGCAACTTGGAAGCTAATAATCAAGGTGGAGGAGAAATTGATGATGTTGAATATGTTATTGATGAAGACGCGCCCGGCTTTAATCCACATGTCACAACAAGGAGTTTTAGAGTATACAAGATTGATCCAAATAATAACAATTTGCTTCCAGTGCAGAACTTGGGGGACCAAGTGTTCTTTTTGGGAGATGGTGGTGGTTCTGTCTCTCTTCCGTCCGGTAATTTCCCAGAAGTGAAAAGGAATTGTATTTATTTTGCAACAAATTATGTATGGAATGAGGAATTGACTCCTAAAACATATAGGTCTCGTGAGATCGGCATATTCTACTTAGATGGTGAAAGAATTAGACGGCCTTTTTCGAGTGTCAAAATATCATTGTCGTATCAAGCCACATGGTTCACTCTAAGTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

20.9

Weight (kDa)

4.14

Isoelectric Point (pI)

39.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 77 - 157 1.8e-13 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 261
AccII CGCG 1 cut(s) 218
AclWI GGATC 1 cut(s) 266
AflIII ACRYGT 1 cut(s) 235
AgsI TTSAA 2 cut(s) 53, 197
AloI GAACNNNNNNTCC 2 cut(s) 305, 337
AluBI AGCT 1 cut(s) 161
AluI AGCT 1 cut(s) 161
Alw26I GTCTC 2 cut(s) 355, 456
AlwI GGATC 1 cut(s) 266
AoxI GGCC 1 cut(s) 497
AspLEI GCGC 1 cut(s) 220
AspS9I GGNCC 1 cut(s) 313
AsuC2I CCSGG 1 cut(s) 222
AsuHPI GGTGA 3 cut(s) 47, 125, 494
AvaII GGWCC 1 cut(s) 313
BauI CACGAG 2 cut(s) 140, 453
BbsI GAAGAC 2 cut(s) 63, 219
BccI CCATC 3 cut(s) 104, 329, 473
BceAI ACGGC 2 cut(s) 79, 512
BclI TGATCA 2 cut(s) 97, 136
BcnI CCSGG 1 cut(s) 222
BcoDI GTCTC 2 cut(s) 355, 456
Bme1390I CCNGG 1 cut(s) 222
Bme18I GGWCC 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 313
BmiI GGNNCC 1 cut(s) 314
BmrFI CCNGG 1 cut(s) 222
BpiI GAAGAC 2 cut(s) 63, 219
BpuMI CCSGG 1 cut(s) 222
BsaI GGTCTC 1 cut(s) 456
BsaWI WCCGGW 1 cut(s) 362
Bse1I ACTGG 1 cut(s) 296
BseNI ACTGG 1 cut(s) 296
BseRI GAGGAG 1 cut(s) 192
BsgI GTGCAG 2 cut(s) 40, 320
Bsh1236I CGCG 1 cut(s) 218
BshFI GGCC 1 cut(s) 499
BsiSI CCGG 2 cut(s) 222, 363
BslFI GGGAC 1 cut(s) 326
BsmAI GTCTC 2 cut(s) 355, 456
BsmFI GGGAC 1 cut(s) 326
BsnI GGCC 1 cut(s) 499
Bso31I GGTCTC 1 cut(s) 456
Bsp143I GATC 4 cut(s) 97, 136, 271, 459
BspANI GGCC 1 cut(s) 499
BspFNI CGCG 1 cut(s) 218
BspHI TCATGA 1 cut(s) 127
BspLI GGNNCC 1 cut(s) 314
BspPI GGATC 1 cut(s) 266
BspTNI GGTCTC 1 cut(s) 456
BsrI ACTGG 1 cut(s) 296
BssMI GATC 4 cut(s) 97, 136, 271, 459
BssNAI GTATAC 1 cut(s) 262
BssSI CACGAG 2 cut(s) 140, 453
Bst1107I GTATAC 1 cut(s) 262
Bst2BI CACGAG 2 cut(s) 140, 453
Bst6I CTCTTC 1 cut(s) 360
BstDEI CTNAG 2 cut(s) 475, 551
BstFNI CGCG 1 cut(s) 218
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 4 cut(s) 100, 139, 274, 462
BstMAI GTCTC 2 cut(s) 355, 456
BstMBI GATC 4 cut(s) 97, 136, 271, 459
BstMWI GCNNNNNNNGC 1 cut(s) 298
BstNSI RCATGY 1 cut(s) 239
BstSCI CCNGG 1 cut(s) 220
BstUI CGCG 1 cut(s) 218
BstV2I GAAGAC 2 cut(s) 63, 219
BstZ17I GTATAC 1 cut(s) 262
BsuRI GGCC 1 cut(s) 499
BtsIMutI CAGTG 1 cut(s) 303
CciI TCATGA 1 cut(s) 127
CfoI GCGC 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 313
CseI GACGC 1 cut(s) 224
CviAII CATG 3 cut(s) 128, 236, 540
CviJI RGCY 4 cut(s) 161, 225, 499, 536
CviKI_1 RGCY 4 cut(s) 161, 225, 499, 536
DdeI CTNAG 2 cut(s) 475, 551
DpnI GATC 4 cut(s) 99, 138, 273, 461
DpnII GATC 4 cut(s) 97, 136, 271, 459
Eam1104I CTCTTC 1 cut(s) 360
EarI CTCTTC 1 cut(s) 360
Eco31I GGTCTC 1 cut(s) 456
Eco32I GATATC 1 cut(s) 40
Eco47I GGWCC 1 cut(s) 313
EcoRV GATATC 1 cut(s) 40
FaeI CATG 3 cut(s) 131, 239, 543
FaqI GGGAC 1 cut(s) 326
FatI CATG 3 cut(s) 127, 235, 539
FbaI TGATCA 2 cut(s) 97, 136
FblI GTMKAC 1 cut(s) 261
GlaI GCGC 1 cut(s) 219
HaeIII GGCC 1 cut(s) 499
HapII CCGG 2 cut(s) 222, 363
HgaI GACGC 1 cut(s) 224
HhaI GCGC 1 cut(s) 220
Hin1II CATG 3 cut(s) 131, 239, 543
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HinfI GANTC 1 cut(s) 433
HpaII CCGG 2 cut(s) 222, 363
HphI GGTGA 3 cut(s) 47, 125, 494
Hpy166II GTNNAC 2 cut(s) 262, 546
Hpy188III TCNNGA 5 cut(s) 86, 101, 128, 140, 455
Hpy8I GTNNAC 2 cut(s) 262, 546
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 4 cut(s) 20, 83, 113, 140
HpyCH4V TGCA 3 cut(s) 21, 301, 404
HpyF10VI GCNNNNNNNGC 1 cut(s) 298
HpyF3I CTNAG 2 cut(s) 475, 551
Hsp92II CATG 3 cut(s) 131, 239, 543
HspAI GCGC 1 cut(s) 218
Ksp22I TGATCA 2 cut(s) 97, 136
Kzo9I GATC 4 cut(s) 97, 136, 271, 459
LpnPI CCDG 6 cut(s) 18, 71, 235, 309, 376, 387
MaeIII GTNAC 1 cut(s) 238
MalI GATC 4 cut(s) 99, 138, 273, 461
MboI GATC 4 cut(s) 97, 136, 271, 459
MboII GAAGA 4 cut(s) 65, 68, 224, 347
MluCI AATT 7 cut(s) 183, 286, 367, 388, 409, 428, 489
MlyI GAGTC 1 cut(s) 427
MnlI CCTC 3 cut(s) 136, 170, 418
MseI TTAA 1 cut(s) 228
MslI CAYNNNNRTG 1 cut(s) 132
MspI CCGG 2 cut(s) 222, 363
MspR9I CCNGG 1 cut(s) 222
MvnI CGCG 1 cut(s) 218
MwoI GCNNNNNNNGC 1 cut(s) 298
NciI CCSGG 1 cut(s) 222
NdeII GATC 4 cut(s) 97, 136, 271, 459
NlaIII CATG 3 cut(s) 131, 239, 543
NlaIV GGNNCC 1 cut(s) 314
NmuCI GTSAC 1 cut(s) 238
NspI RCATGY 1 cut(s) 239
PagI TCATGA 1 cut(s) 127
PciI ACATGT 1 cut(s) 235
PleI GAGTC 1 cut(s) 427
PpsI GAGTC 1 cut(s) 427
PscI ACATGT 1 cut(s) 235
PspN4I GGNNCC 1 cut(s) 314
PspPI GGNCC 1 cut(s) 313
RseI CAYNNNNRTG 1 cut(s) 132
SaqAI TTAA 1 cut(s) 228
Sau3AI GATC 4 cut(s) 97, 136, 271, 459
Sau96I GGNCC 1 cut(s) 313
SchI GAGTC 1 cut(s) 427
ScrFI CCNGG 1 cut(s) 222
SetI ASST 4 cut(s) 31, 163, 175, 452
SinI GGWCC 1 cut(s) 313
SmiMI CAYNNNNRTG 1 cut(s) 132
Sse9I AATT 7 cut(s) 183, 286, 367, 388, 409, 428, 489
SspI AATATT 1 cut(s) 70
StyD4I CCNGG 1 cut(s) 220
TaqI TCGA 1 cut(s) 506
TasI AATT 7 cut(s) 183, 286, 367, 388, 409, 428, 489
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TscAI CASTG 1 cut(s) 303
TseFI GTSAC 1 cut(s) 238
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 2 cut(s) 132, 225
TspGWI ACGGA 1 cut(s) 348
TspRI CASTG 1 cut(s) 303
VpaK11BI GGWCC 1 cut(s) 313
XceI RCATGY 1 cut(s) 239
XmiI GTMKAC 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.