transcription, DNA-templated
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G35660 |
| fragaria_vesca | FvH4_2g11773 |
| malus_domestica | MD05G1041500.v1.1 MD10G1047900.v1.1 |
| prunus_persica | Prupe.8G057200_v2.0.a1 Prupe.8G057200_v2.0.a1 Prupe.8G057200_v2.0.a1 |
| pyrus_communis | pycom05g03420 pycom10g03390 |
| rosa_chinensis | RchiOBHm_Chr6g0272031 |
| rosa_laevigata | RLG00000013708 |
| rosa_multiflora | Rmu_sc0023166.1_g000001 |
| rosa_roxburghii | Rroxscaffold_173G00434950 Rroxscaffold_7G00196840 |
| rosa_rugosa | Rorug06G0065000 |
| rosa_samantha | Rh6AG182500 Rh6BG184700 Rh6CG183600 Rh6DG175200 |
| rosa_wichuraiana | Rw6G015700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1802 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2893 |
| AatII | GACGTC | 1 cut(s) | 505 |
| Acc36I | ACCTGC | 1 cut(s) | 1802 |
| AccB1I | GGYRCC | 1 cut(s) | 4181 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2493, 3999 |
| AccBSI | CCGCTC | 2 cut(s) | 131, 211 |
| AccI | GTMKAC | 2 cut(s) | 713, 2885 |
| AccII | CGCG | 1 cut(s) | 19 |
| AccIII | TCCGGA | 1 cut(s) | 251 |
| AclWI | GGATC | 2 cut(s) | 1220, 2305 |
| AcoI | YGGCCR | 1 cut(s) | 1053 |
| AcsI | RAATTY | 6 cut(s) | 544, 734, 1853, 2327, 3347, 3995 |
| AcuI | CTGAAG | 3 cut(s) | 690, 2565, 3722 |
| AcyI | GRCGYC | 1 cut(s) | 502 |
| AfaI | GTAC | 7 cut(s) | 1173, 1515, 1746, 2942, 3198, 3827, 3987 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 2482, 2493, 2960, 3999 |
| AflII | CTTAAG | 2 cut(s) | 2627, 3269 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3233 |
| AjnI | CCWGG | 8 cut(s) | 263, 637, 1016, 1228, 1747, 2031, 2040, 2829 |
| Alw21I | GWGCWC | 4 cut(s) | 163, 1414, 2432, 3858 |
| Alw26I | GTCTC | 7 cut(s) | 182, 493, 1896, 2820, 2901, 3308, 3451 |
| AlwI | GGATC | 2 cut(s) | 1220, 2305 |
| Ama87I | CYCGRG | 2 cut(s) | 681, 984 |
| Aor13HI | TCCGGA | 1 cut(s) | 251 |
| ApeKI | GCWGC | 5 cut(s) | 1949, 2644, 2685, 2987, 3359 |
| ApoI | RAATTY | 6 cut(s) | 544, 734, 1853, 2327, 3347, 3995 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 602, 634, 1808, 1840 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1372, 1845, 2151, 2572 |
| AspLEI | GCGC | 1 cut(s) | 2757 |
| AsuC2I | CCSGG | 1 cut(s) | 12 |
| AsuII | TTCGAA | 1 cut(s) | 565 |
| AvaI | CYCGRG | 2 cut(s) | 681, 984 |
| AvaII | GGWCC | 6 cut(s) | 1081, 1724, 2738, 2951, 3537, 4200 |
| BaeGI | GKGCMC | 1 cut(s) | 444 |
| BalI | TGGCCA | 1 cut(s) | 1055 |
| BanI | GGYRCC | 1 cut(s) | 4181 |
| BanII | GRGCYC | 2 cut(s) | 2432, 3858 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2062, 2094 |
| BbsI | GAAGAC | 5 cut(s) | 813, 2349, 3232, 3396, 3528 |
| Bbv12I | GWGCWC | 4 cut(s) | 163, 1414, 2432, 3858 |
| BbvCI | CCTCAGC | 2 cut(s) | 2307, 4130 |
| BbvI | GCAGC | 5 cut(s) | 1936, 2656, 2697, 2999, 3371 |
| BceAI | ACGGC | 2 cut(s) | 286, 382 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 545, 579 |
| BciT130I | CCWGG | 8 cut(s) | 265, 639, 1018, 1230, 1749, 2033, 2042, 2831 |
| BclI | TGATCA | 5 cut(s) | 492, 526, 1678, 2410, 3181 |
| BcnI | CCSGG | 1 cut(s) | 12 |
| BcoDI | GTCTC | 7 cut(s) | 182, 493, 1896, 2820, 2901, 3308, 3451 |
| BfaI | CTAG | 9 cut(s) | 297, 1022, 1038, 1542, 1694, 1772, 2724, 3012, 3039 |
| BfmI | CTRYAG | 3 cut(s) | 1638, 1875, 4091 |
| BfrI | CTTAAG | 2 cut(s) | 2627, 3269 |
| BfuAI | ACCTGC | 1 cut(s) | 1802 |
| BglII | AGATCT | 2 cut(s) | 1871, 4109 |
| BisI | GCNGC | 9 cut(s) | 82, 1950, 1997, 2645, 2686, 2988, 3100, 3360, 3663 |
| BlsI | GCNGC | 9 cut(s) | 83, 1951, 1998, 2646, 2687, 2989, 3101, 3361, 3664 |
| Bme1390I | CCNGG | 9 cut(s) | 12, 265, 639, 1018, 1230, 1749, 2033, 2042, 2831 |
| Bme18I | GGWCC | 6 cut(s) | 1081, 1724, 2738, 2951, 3537, 4200 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3233 |
| BmeT110I | CYCGRG | 2 cut(s) | 681, 984 |
| BmiI | GGNNCC | 5 cut(s) | 1202, 1437, 2016, 3538, 4183 |
| BmrFI | CCNGG | 9 cut(s) | 12, 265, 639, 1018, 1230, 1749, 2033, 2042, 2831 |
| BmrI | ACTGGG | 2 cut(s) | 471, 2934 |
| BmuI | ACTGGG | 2 cut(s) | 471, 2934 |
| BpiI | GAAGAC | 5 cut(s) | 813, 2349, 3232, 3396, 3528 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2447, 2479 |
| BpmI | CTGGAG | 5 cut(s) | 202, 660, 1251, 3332, 3531 |
| Bpu10I | CCTNAGC | 3 cut(s) | 2307, 2535, 4130 |
| Bpu14I | TTCGAA | 1 cut(s) | 565 |
| BpuEI | CTTGAG | 5 cut(s) | 362, 1318, 1611, 1953, 2040 |
| BpuMI | CCSGG | 1 cut(s) | 12 |
| Bsa29I | ATCGAT | 1 cut(s) | 3261 |
| BsaAI | YACGTR | 1 cut(s) | 1517 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1055 |
| BsaHI | GRCGYC | 1 cut(s) | 502 |
| BsaI | GGTCTC | 1 cut(s) | 2820 |
| BsaWI | WCCGGW | 2 cut(s) | 251, 2557 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 2482, 2493, 2960, 3999 |
| Bse3DI | GCAATG | 1 cut(s) | 3094 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1055 |
| BseAI | TCCGGA | 1 cut(s) | 251 |
| BseBI | CCWGG | 8 cut(s) | 265, 639, 1018, 1230, 1749, 2033, 2042, 2831 |
| BseCI | ATCGAT | 1 cut(s) | 3261 |
| BseGI | GGATG | 9 cut(s) | 180, 1159, 1998, 2248, 2465, 2881, 3083, 3758, 3814 |
| BseJI | GATNNNNATC | 1 cut(s) | 1055 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 2482, 2493, 2960, 3999 |
| BseMI | GCAATG | 1 cut(s) | 3094 |
| BseRI | GAGGAG | 3 cut(s) | 153, 203, 1927 |
| BseSI | GKGCMC | 1 cut(s) | 444 |
| BseXI | GCAGC | 5 cut(s) | 1936, 2656, 2697, 2999, 3371 |
| BseYI | CCCAGC | 2 cut(s) | 1256, 2638 |
| BsgI | GTGCAG | 2 cut(s) | 2644, 2672 |
| Bsh1236I | CGCG | 1 cut(s) | 19 |
| BshNI | GGYRCC | 1 cut(s) | 4181 |
| BshVI | ATCGAT | 1 cut(s) | 3261 |
| BsiHKAI | GWGCWC | 4 cut(s) | 163, 1414, 2432, 3858 |
| BsiHKCI | CYCGRG | 2 cut(s) | 681, 984 |
| BsiSI | CCGG | 3 cut(s) | 11, 252, 2558 |
| BslFI | GGGAC | 6 cut(s) | 281, 675, 706, 786, 989, 1405 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 2482, 2493, 2960, 3999 |
| BsmAI | GTCTC | 7 cut(s) | 182, 493, 1896, 2820, 2901, 3308, 3451 |
| BsmBI | CGTCTC | 1 cut(s) | 493 |
| BsmFI | GGGAC | 6 cut(s) | 281, 675, 706, 786, 989, 1405 |
| BsmI | GAATGC | 3 cut(s) | 556, 3277, 3471 |
| Bso31I | GGTCTC | 1 cut(s) | 2820 |
| BsoBI | CYCGRG | 2 cut(s) | 681, 984 |
| Bsp119I | TTCGAA | 1 cut(s) | 565 |
| Bsp1286I | GDGCHC | 5 cut(s) | 163, 444, 1414, 2432, 3858 |
| Bsp13I | TCCGGA | 1 cut(s) | 251 |
| Bsp19I | CCATGG | 2 cut(s) | 3220, 3789 |
| Bsp68I | TCGCGA | 1 cut(s) | 19 |
| BspDI | ATCGAT | 1 cut(s) | 3261 |
| BspEI | TCCGGA | 1 cut(s) | 251 |
| BspFNI | CGCG | 1 cut(s) | 19 |
| BspLI | GGNNCC | 5 cut(s) | 1202, 1437, 2016, 3538, 4183 |
| BspMAI | CTGCAG | 1 cut(s) | 4095 |
| BspMI | ACCTGC | 1 cut(s) | 1802 |
| BspPI | GGATC | 2 cut(s) | 1220, 2305 |
| BspQI | GCTCTTC | 1 cut(s) | 3042 |
| BspT104I | TTCGAA | 1 cut(s) | 565 |
| BspT107I | GGYRCC | 1 cut(s) | 4181 |
| BspTI | CTTAAG | 2 cut(s) | 2627, 3269 |
| BspTNI | GGTCTC | 1 cut(s) | 2820 |
| BsrBI | CCGCTC | 2 cut(s) | 131, 211 |
| BsrDI | GCAATG | 1 cut(s) | 3094 |
| BssNAI | GTATAC | 1 cut(s) | 714 |
| BssNI | GRCGYC | 1 cut(s) | 502 |
| BssT1I | CCWWGG | 5 cut(s) | 2487, 2944, 3220, 3762, 3789 |
| Bst1107I | GTATAC | 1 cut(s) | 714 |
| Bst2UI | CCWGG | 8 cut(s) | 265, 639, 1018, 1230, 1749, 2033, 2042, 2831 |
| Bst6I | CTCTTC | 7 cut(s) | 471, 1315, 2483, 2556, 3042, 3237, 3962 |
| BstACI | GRCGYC | 1 cut(s) | 502 |
| BstAFI | CTTAAG | 2 cut(s) | 2627, 3269 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1457, 2650, 3602 |
| BstBAI | YACGTR | 1 cut(s) | 1517 |
| BstBI | TTCGAA | 1 cut(s) | 565 |
| BstC8I | GCNNGC | 8 cut(s) | 908, 965, 1220, 1596, 2284, 2707, 3684, 3688 |
| BstDSI | CCRYGG | 2 cut(s) | 3220, 3789 |
| BstF5I | GGATG | 9 cut(s) | 180, 1159, 1998, 2248, 2465, 2881, 3083, 3758, 3814 |
| BstFNI | CGCG | 1 cut(s) | 19 |
| BstHHI | GCGC | 1 cut(s) | 2757 |
| BstMAI | GTCTC | 7 cut(s) | 182, 493, 1896, 2820, 2901, 3308, 3451 |
| BstNI | CCWGG | 8 cut(s) | 265, 639, 1018, 1230, 1749, 2033, 2042, 2831 |
| BstNSI | RCATGY | 6 cut(s) | 910, 2109, 2286, 2651, 3529, 3992 |
| BstSCI | CCNGG | 9 cut(s) | 10, 263, 637, 1016, 1228, 1747, 2031, 2040, 2829 |
| BstSFI | CTRYAG | 3 cut(s) | 1638, 1875, 4091 |
| BstSLI | GKGCMC | 1 cut(s) | 444 |
| BstUI | CGCG | 1 cut(s) | 19 |
| BstV1I | GCAGC | 5 cut(s) | 1936, 2656, 2697, 2999, 3371 |
| BstV2I | GAAGAC | 5 cut(s) | 813, 2349, 3232, 3396, 3528 |
| BstX2I | RGATCY | 3 cut(s) | 1225, 1871, 4109 |
| BstYI | RGATCY | 3 cut(s) | 1225, 1871, 4109 |
| BstZ17I | GTATAC | 1 cut(s) | 714 |
| Bsu15I | ATCGAT | 1 cut(s) | 3261 |
| BsuTUI | ATCGAT | 1 cut(s) | 3261 |
| BtgI | CCRYGG | 2 cut(s) | 3220, 3789 |
| BtgZI | GCGATG | 3 cut(s) | 1338, 2919, 4131 |
| BtsCI | GGATG | 9 cut(s) | 180, 1159, 1998, 2248, 2465, 2881, 3083, 3758, 3814 |
| BtsI | GCAGTG | 1 cut(s) | 2716 |
| BtsIMutI | CAGTG | 9 cut(s) | 163, 183, 2031, 2716, 2895, 2906, 3308, 3498, 3617 |
| BtuMI | TCGCGA | 1 cut(s) | 19 |
| BveI | ACCTGC | 1 cut(s) | 1802 |
| Cac8I | GCNNGC | 8 cut(s) | 908, 965, 1220, 1596, 2284, 2707, 3684, 3688 |
| CfoI | GCGC | 1 cut(s) | 2757 |
| ClaI | ATCGAT | 1 cut(s) | 3261 |
| CsiI | ACCWGGT | 1 cut(s) | 1747 |
| Csp6I | GTAC | 7 cut(s) | 1172, 1514, 1745, 2941, 3197, 3826, 3986 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1428, 1463 |
| CviQI | GTAC | 7 cut(s) | 1172, 1514, 1745, 2941, 3197, 3826, 3986 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2893 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3233 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2893 |
| EaeI | YGGCCR | 1 cut(s) | 1053 |
| Eam1104I | CTCTTC | 7 cut(s) | 471, 1315, 2483, 2556, 3042, 3237, 3962 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3233 |
| EarI | CTCTTC | 7 cut(s) | 471, 1315, 2483, 2556, 3042, 3237, 3962 |
| Ecl136II | GAGCTC | 2 cut(s) | 2430, 3856 |
| Eco130I | CCWWGG | 5 cut(s) | 2487, 2944, 3220, 3762, 3789 |
| Eco24I | GRGCYC | 2 cut(s) | 2432, 3858 |
| Eco31I | GGTCTC | 1 cut(s) | 2820 |
| Eco47I | GGWCC | 6 cut(s) | 1081, 1724, 2738, 2951, 3537, 4200 |
| Eco53kI | GAGCTC | 2 cut(s) | 2430, 3856 |
| Eco57I | CTGAAG | 3 cut(s) | 690, 2565, 3722 |
| Eco88I | CYCGRG | 2 cut(s) | 681, 984 |
| EcoICRI | GAGCTC | 2 cut(s) | 2430, 3856 |
| EcoO109I | RGGNCCY | 2 cut(s) | 310, 2951 |
| EcoRI | GAATTC | 1 cut(s) | 734 |
| EcoRII | CCWGG | 8 cut(s) | 263, 637, 1016, 1228, 1747, 2031, 2040, 2829 |
| EcoT14I | CCWWGG | 5 cut(s) | 2487, 2944, 3220, 3762, 3789 |
| EcoT22I | ATGCAT | 5 cut(s) | 558, 3279, 3298, 3531, 3760 |
| EcoT38I | GRGCYC | 2 cut(s) | 2432, 3858 |
| ErhI | CCWWGG | 5 cut(s) | 2487, 2944, 3220, 3762, 3789 |
| Esp3I | CGTCTC | 1 cut(s) | 493 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2826, 2858 |
| FaqI | GGGAC | 6 cut(s) | 281, 675, 706, 786, 989, 1405 |
| FauI | CCCGC | 2 cut(s) | 373, 3735 |
| FauNDI | CATATG | 2 cut(s) | 3298, 3667 |
| FbaI | TGATCA | 5 cut(s) | 492, 526, 1678, 2410, 3181 |
| FblI | GTMKAC | 2 cut(s) | 713, 2885 |
| Fnu4HI | GCNGC | 9 cut(s) | 82, 1950, 1997, 2645, 2686, 2988, 3100, 3360, 3663 |
| FokI | GGATG | 9 cut(s) | 187, 1146, 2005, 2255, 2452, 2888, 3090, 3745, 3801 |
| FriOI | GRGCYC | 2 cut(s) | 2432, 3858 |
| Fsp4HI | GCNGC | 9 cut(s) | 82, 1950, 1997, 2645, 2686, 2988, 3100, 3360, 3663 |
| FspBI | CTAG | 9 cut(s) | 297, 1022, 1038, 1542, 1694, 1772, 2724, 3012, 3039 |
| GlaI | GCGC | 1 cut(s) | 2756 |
| GluI | GCNGC | 9 cut(s) | 82, 1950, 1997, 2645, 2686, 2988, 3100, 3360, 3663 |
| GsaI | CCCAGC | 2 cut(s) | 1260, 2642 |
| GsuI | CTGGAG | 5 cut(s) | 202, 660, 1251, 3332, 3531 |
| HapII | CCGG | 3 cut(s) | 11, 252, 2558 |
| HhaI | GCGC | 1 cut(s) | 2757 |
| Hin1I | GRCGYC | 1 cut(s) | 502 |
| Hin6I | GCGC | 1 cut(s) | 2755 |
| HinP1I | GCGC | 1 cut(s) | 2755 |
| HincII | GTYRAC | 2 cut(s) | 2886, 4035 |
| HindII | GTYRAC | 2 cut(s) | 2886, 4035 |
| HindIII | AAGCTT | 4 cut(s) | 573, 792, 2229, 2259 |
| HpaII | CCGG | 3 cut(s) | 11, 252, 2558 |
| Hpy166II | GTNNAC | 6 cut(s) | 714, 2738, 2886, 3644, 4035, 4200 |
| Hpy8I | GTNNAC | 6 cut(s) | 714, 2738, 2886, 3644, 4035, 4200 |
| Hpy99I | CGWCG | 3 cut(s) | 71, 1365, 3946 |
| HpyAV | CCTTC | 7 cut(s) | 121, 683, 1214, 1356, 2260, 3607, 3920 |
| HpyCH4IV | ACGT | 3 cut(s) | 502, 1516, 1908 |
| HpySE526I | ACGT | 3 cut(s) | 502, 1516, 1908 |
| Hsp92I | GRCGYC | 1 cut(s) | 502 |
| HspAI | GCGC | 1 cut(s) | 2755 |
| Kpn2I | TCCGGA | 1 cut(s) | 251 |
| Ksp22I | TGATCA | 5 cut(s) | 492, 526, 1678, 2410, 3181 |
| LguI | GCTCTTC | 1 cut(s) | 3042 |
| LmnI | GCTCC | 6 cut(s) | 166, 216, 367, 1232, 1441, 4135 |
| Lsp1109I | GCAGC | 5 cut(s) | 1936, 2656, 2697, 2999, 3371 |
| MabI | ACCWGGT | 1 cut(s) | 1747 |
| MaeI | CTAG | 9 cut(s) | 297, 1022, 1038, 1542, 1694, 1772, 2724, 3012, 3039 |
| MaeII | ACGT | 3 cut(s) | 502, 1516, 1908 |
| MaeIII | GTNAC | 9 cut(s) | 280, 806, 920, 1088, 1814, 2135, 2250, 3974, 4039 |
| MbiI | CCGCTC | 2 cut(s) | 131, 211 |
| MfeI | CAATTG | 1 cut(s) | 2958 |
| MflI | RGATCY | 3 cut(s) | 1225, 1871, 4109 |
| MhlI | GDGCHC | 5 cut(s) | 163, 444, 1414, 2432, 3858 |
| MlsI | TGGCCA | 1 cut(s) | 1055 |
| MluNI | TGGCCA | 1 cut(s) | 1055 |
| MlyI | GAGTC | 9 cut(s) | 842, 1387, 1762, 2891, 3386, 3453, 3953, 3971, 4180 |
| MmeI | TCCRAC | 5 cut(s) | 1919, 2148, 3498, 3924, 4128 |
| Mox20I | TGGCCA | 1 cut(s) | 1055 |
| Mph1103I | ATGCAT | 5 cut(s) | 558, 3279, 3298, 3531, 3760 |
| MroI | TCCGGA | 1 cut(s) | 251 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1372, 1845, 2151, 2572 |
| MscI | TGGCCA | 1 cut(s) | 1055 |
| MslI | CAYNNNNRTG | 3 cut(s) | 672, 1164, 3888 |
| Msp20I | TGGCCA | 1 cut(s) | 1055 |
| MspA1I | CMGCKG | 5 cut(s) | 368, 433, 2688, 3742, 3908 |
| MspCI | CTTAAG | 2 cut(s) | 2627, 3269 |
| MspI | CCGG | 3 cut(s) | 11, 252, 2558 |
| MspR9I | CCNGG | 9 cut(s) | 12, 265, 639, 1018, 1230, 1749, 2033, 2042, 2831 |
| MunI | CAATTG | 1 cut(s) | 2958 |
| Mva1269I | GAATGC | 3 cut(s) | 556, 3277, 3471 |
| MvaI | CCWGG | 8 cut(s) | 265, 639, 1018, 1230, 1749, 2033, 2042, 2831 |
| MvnI | CGCG | 1 cut(s) | 19 |
| NciI | CCSGG | 1 cut(s) | 12 |
| NcoI | CCATGG | 2 cut(s) | 3220, 3789 |
| NdeI | CATATG | 2 cut(s) | 3298, 3667 |
| NlaIV | GGNNCC | 5 cut(s) | 1202, 1437, 2016, 3538, 4183 |
| NmeAIII | GCCGAG | 1 cut(s) | 4063 |
| NmuCI | GTSAC | 7 cut(s) | 280, 806, 920, 1814, 2135, 3974, 4039 |
| NruI | TCGCGA | 1 cut(s) | 19 |
| NsiI | ATGCAT | 5 cut(s) | 558, 3279, 3298, 3531, 3760 |
| NspI | RCATGY | 6 cut(s) | 910, 2109, 2286, 2651, 3529, 3992 |
| NspV | TTCGAA | 1 cut(s) | 565 |
| PaeI | GCATGC | 2 cut(s) | 910, 2286 |
| PaqCI | CACCTGC | 1 cut(s) | 1802 |
| PciSI | GCTCTTC | 1 cut(s) | 3042 |
| PctI | GAATGC | 3 cut(s) | 556, 3277, 3471 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1372, 1845, 2151, 2572 |
| PflFI | GACNNNGTC | 1 cut(s) | 1028 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2493, 3999 |
| PfoI | TCCNGGA | 1 cut(s) | 1228 |
| PkrI | GCNGC | 9 cut(s) | 83, 1951, 1998, 2646, 2687, 2989, 3101, 3361, 3664 |
| PleI | GAGTC | 9 cut(s) | 841, 1387, 1762, 2890, 3386, 3453, 3953, 3971, 4179 |
| PpsI | GAGTC | 9 cut(s) | 841, 1387, 1762, 2890, 3386, 3453, 3953, 3971, 4179 |
| Ppu21I | YACGTR | 1 cut(s) | 1517 |
| PpuMI | RGGWCCY | 1 cut(s) | 2951 |
| Psp124BI | GAGCTC | 2 cut(s) | 2432, 3858 |
| Psp5II | RGGWCCY | 1 cut(s) | 2951 |
| Psp6I | CCWGG | 8 cut(s) | 263, 637, 1016, 1228, 1747, 2031, 2040, 2829 |
| PspFI | CCCAGC | 2 cut(s) | 1256, 2638 |
| PspGI | CCWGG | 8 cut(s) | 263, 637, 1016, 1228, 1747, 2031, 2040, 2829 |
| PspN4I | GGNNCC | 5 cut(s) | 1202, 1437, 2016, 3538, 4183 |
| PspPPI | RGGWCCY | 1 cut(s) | 2951 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2507, 2539 |
| PstI | CTGCAG | 1 cut(s) | 4095 |
| PsuI | RGATCY | 3 cut(s) | 1225, 1871, 4109 |
| PsyI | GACNNNGTC | 1 cut(s) | 1028 |
| PvuII | CAGCTG | 2 cut(s) | 2688, 3908 |
| RruI | TCGCGA | 1 cut(s) | 19 |
| RsaI | GTAC | 7 cut(s) | 1173, 1515, 1746, 2942, 3198, 3827, 3987 |
| RsaNI | GTAC | 7 cut(s) | 1172, 1514, 1745, 2941, 3197, 3826, 3986 |
| RseI | CAYNNNNRTG | 3 cut(s) | 672, 1164, 3888 |
| SacI | GAGCTC | 2 cut(s) | 2432, 3858 |
| SalI | GTCGAC | 1 cut(s) | 2884 |
| SapI | GCTCTTC | 1 cut(s) | 3042 |
| SatI | GCNGC | 9 cut(s) | 82, 1950, 1997, 2645, 2686, 2988, 3100, 3360, 3663 |
| SchI | GAGTC | 9 cut(s) | 842, 1387, 1762, 2891, 3386, 3453, 3953, 3971, 4180 |
| ScrFI | CCNGG | 9 cut(s) | 12, 265, 639, 1018, 1230, 1749, 2033, 2042, 2831 |
| SduI | GDGCHC | 5 cut(s) | 163, 444, 1414, 2432, 3858 |
| SexAI | ACCWGGT | 1 cut(s) | 1747 |
| SfcI | CTRYAG | 3 cut(s) | 1638, 1875, 4091 |
| SfuI | TTCGAA | 1 cut(s) | 565 |
| SinI | GGWCC | 6 cut(s) | 1081, 1724, 2738, 2951, 3537, 4200 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 672, 1164, 3888 |
| SmlI | CTYRAG | 7 cut(s) | 377, 1333, 1626, 1968, 2055, 2627, 3269 |
| SmoI | CTYRAG | 7 cut(s) | 377, 1333, 1626, 1968, 2055, 2627, 3269 |
| SphI | GCATGC | 2 cut(s) | 910, 2286 |
| SspI | AATATT | 1 cut(s) | 2934 |
| SspMI | CTAG | 9 cut(s) | 297, 1022, 1038, 1542, 1694, 1772, 2724, 3012, 3039 |
| SstI | GAGCTC | 2 cut(s) | 2432, 3858 |
| StyD4I | CCNGG | 9 cut(s) | 10, 263, 637, 1016, 1228, 1747, 2031, 2040, 2829 |
| StyI | CCWWGG | 5 cut(s) | 2487, 2944, 3220, 3762, 3789 |
| TaiI | ACGT | 3 cut(s) | 505, 1519, 1911 |
| TatI | WGTACW | 1 cut(s) | 3196 |
| TauI | GCSGC | 4 cut(s) | 84, 1999, 3102, 3665 |
| TscAI | CASTG | 9 cut(s) | 163, 190, 2031, 2716, 2895, 2906, 3315, 3498, 3624 |
| TseFI | GTSAC | 7 cut(s) | 280, 806, 920, 1814, 2135, 3974, 4039 |
| TseI | GCWGC | 5 cut(s) | 1949, 2644, 2685, 2987, 3359 |
| Tsp45I | GTSAC | 7 cut(s) | 280, 806, 920, 1814, 2135, 3974, 4039 |
| TspGWI | ACGGA | 5 cut(s) | 409, 1378, 2027, 3664, 4178 |
| TspRI | CASTG | 9 cut(s) | 163, 190, 2031, 2716, 2895, 2906, 3315, 3498, 3624 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1028 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2493, 3999 |
| Vha464I | CTTAAG | 2 cut(s) | 2627, 3269 |
| VpaK11BI | GGWCC | 6 cut(s) | 1081, 1724, 2738, 2951, 3537, 4200 |
| XapI | RAATTY | 6 cut(s) | 544, 734, 1853, 2327, 3347, 3995 |
| XbaI | TCTAGA | 1 cut(s) | 1771 |
| XceI | RCATGY | 6 cut(s) | 910, 2109, 2286, 2651, 3529, 3992 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2164 |
| XmiI | GTMKAC | 2 cut(s) | 713, 2885 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1372, 1845, 2151, 2572 |
| XspI | CTAG | 9 cut(s) | 297, 1022, 1038, 1542, 1694, 1772, 2724, 3012, 3039 |
| ZraI | GACGTC | 1 cut(s) | 503 |
| Zsp2I | ATGCAT | 5 cut(s) | 558, 3279, 3298, 3531, 3760 |