Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0008049

Physical Location & Seq

Genomic Coordinates Reverse (-)

10667628 .. 10677659

Gene Structure 10032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g12161.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGTTGGCAATGGCAGTGCCACTGAGGTTATCATGGGCTTGGGGTCACAAATCCCTCCCCACAATTTTCCAACACTTTCCCGGAAAATTTAACCTCAAAGCTTCAACTTCCAGCGACGACTTGGTTTCGCTTTCTTTGCCCCAAAACTCTCCTCTCTCTGGATTGGAGGATGTATTGTTGAGCTTTATCTTGGGCAAGAAGAGGGCCACAGAAGTTGCTCACTCGGTTTGGAGACGTGTGGTTCAAGAAGGAGATACGGTAATTGACACCACTTGTGGCAATGGTCATGATACCTTAGCAATGCTCAAGATGGTTGCTGATGCATCGGGTAAGGGTTCAATTTATGGAATGGATATTCAGGAAGTTGCTTTACAGAAAACTTCTTCTTTGCTGGAAGAATCAGTCAGCCTAAAAGAGAAAGAACTTGTTAAGCTCTTCTCCAAATGTCACAGTAAAATGCGTGAAATTCTTCCGCCGGATACCTGTGTTAGGCTTGTTGCTTTCAACCTAGGCTATCTTCCTGGTGGTGACAAAACAATAATCACTGAATCAGGAACAACACTGAAAGCATTGGAAGTTGCAAAAGATATCCTGCTGCCGGGAGGGCTTATCAGCTTAGTGGTTTATGTGGGGCATCCTGGTGGATGGGAAGAGCTGCAGATTGTACGACACTTTGTTTCTAGACTATCTGTTGAGAAATGGATCTGCTGTGAGTATCAGTCATCAAATCGATCAATGTCTCCAATACTTGTTTTCTTATTCAAAAGATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

rRNA_methylase

Protein Analysis

258

Amino Acids

28.32

Weight (kDa)

8.18

Isoelectric Point (pI)

43.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_31	PF13847	83 - 130	9.8e-06	Methyltransferase domain
rRNA_methylase	PF06962	114 - 254	1.1e-41	Putative rRNA methylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16445
fragaria_vesca	FvH4_2g12161 FvH4_2g12161 FvH4_2g12161 FvH4_2g12161 FvH4_2g12161
malus_domestica	MD05G1040700.v1.1
prunus_persica	Prupe.8G055300_v2.0.a1 Prupe.8G055300_v2.0.a1 Prupe.8G055300_v2.0.a1 Prupe.8G055300_v2.0.a1 Prupe.8G055300_v2.0.a1
pyrus_communis	pycom05g03330
rosa_chinensis	RchiOBHm_Chr6g0272151
rosa_laevigata	RLG00000013697
rosa_multiflora	Rmu_sc0004606.1_g000002 Rmu_sc0013301.1_g000011
rosa_roxburghii	Rroxscaffold_7G00196550
rosa_rugosa	Rorug06G0066100
rosa_samantha	Rh6AG183300 Rh6BG183800 Rh6CG184600 Rh6DG176300
rosa_wichuraiana	Rw6G015780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	473
AclWI	GGATC	1 cut(s)	710
AcsI	RAATTY	2 cut(s)	86, 465
AfaI	GTAC	1 cut(s)	666
AfiI	CCNNNNNNNGG	3 cut(s)	158, 489, 598
AflIII	ACRYGT	1 cut(s)	235
AgsI	TTSAA	5 cut(s)	105, 245, 339, 505, 763
AjiI	CACGTC	1 cut(s)	236
AjnI	CCWGG	2 cut(s)	520, 637
AluBI	AGCT	5 cut(s)	101, 183, 433, 615, 655
AluI	AGCT	5 cut(s)	101, 183, 433, 615, 655
Alw26I	GTCTC	2 cut(s)	226, 744
AlwI	GGATC	1 cut(s)	710
AoxI	GGCC	1 cut(s)	204
ApeKI	GCWGC	2 cut(s)	595, 655
ApoI	RAATTY	2 cut(s)	86, 465
Asp700I	GAANNNNTTC	1 cut(s)	468
AspA2I	CCTAGG	1 cut(s)	508
AspS9I	GGNCC	1 cut(s)	204
AsuC2I	CCSGG	2 cut(s)	81, 600
AsuHPI	GGTGA	1 cut(s)	539
AvrII	CCTAGG	1 cut(s)	508
BaeI	ACNNNNGTAYC	2 cut(s)	471, 504
BarI	GAAGNNNNNNTAC	2 cut(s)	354, 386
BbvI	GCAGC	2 cut(s)	582, 642
BccI	CCATC	2 cut(s)	304, 639
BciT130I	CCWGG	2 cut(s)	522, 639
BciVI	GTATCC	1 cut(s)	472
BcnI	CCSGG	2 cut(s)	81, 600
BcoDI	GTCTC	2 cut(s)	226, 744
BfaI	CTAG	2 cut(s)	509, 681
BfmI	CTRYAG	1 cut(s)	656
BfuI	GTATCC	1 cut(s)	472
BglI	GCCNNNNNGGC	1 cut(s)	604
BisI	GCNGC	2 cut(s)	596, 656
BlnI	CCTAGG	1 cut(s)	508
BlsI	GCNGC	2 cut(s)	597, 657
Bme1390I	CCNGG	4 cut(s)	81, 522, 600, 639
BmgBI	CACGTC	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	204
BmrFI	CCNGG	4 cut(s)	81, 522, 600, 639
BmsI	GCATC	3 cut(s)	310, 332, 643
Bpu10I	CCTNAGC	1 cut(s)	295
BpuEI	CTTGAG	1 cut(s)	290
BpuMI	CCSGG	2 cut(s)	81, 600
Bsa29I	ATCGAT	1 cut(s)	730
BsaJI	CCNNGG	1 cut(s)	508
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bsc4I	CCNNNNNNNGG	3 cut(s)	158, 489, 598
Bse3DI	GCAATG	3 cut(s)	15, 286, 306
BseBI	CCWGG	2 cut(s)	522, 639
BseCI	ATCGAT	1 cut(s)	730
BseDI	CCNNGG	1 cut(s)	508
BseGI	GGATG	3 cut(s)	175, 634, 650
BseLI	CCNNNNNNNGG	3 cut(s)	158, 489, 598
BseMI	GCAATG	3 cut(s)	15, 286, 306
BseMII	CTCAG	1 cut(s)	14
BseRI	GAGGAG	1 cut(s)	141
BseXI	GCAGC	2 cut(s)	582, 642
BshFI	GGCC	1 cut(s)	206
BshVI	ATCGAT	1 cut(s)	730
BsiSI	CCGG	3 cut(s)	81, 476, 599
BslI	CCNNNNNNNGG	3 cut(s)	158, 489, 598
BsmAI	GTCTC	2 cut(s)	226, 744
BsmBI	CGTCTC	1 cut(s)	226
BsnI	GGCC	1 cut(s)	206
Bsp143I	GATC	2 cut(s)	702, 731
BspACI	CCGC	1 cut(s)	473
BspANI	GGCC	1 cut(s)	206
BspCNI	CTCAG	1 cut(s)	15
BspDI	ATCGAT	1 cut(s)	730
BspHI	TCATGA	1 cut(s)	286
BspMAI	CTGCAG	1 cut(s)	660
BspPI	GGATC	1 cut(s)	710
BspQI	GCTCTTC	2 cut(s)	440, 645
BsrDI	GCAATG	3 cut(s)	15, 286, 306
BssECI	CCNNGG	1 cut(s)	508
BssMI	GATC	2 cut(s)	702, 731
BssT1I	CCWWGG	1 cut(s)	508
Bst2UI	CCWGG	2 cut(s)	522, 639
Bst4CI	ACNGT	2 cut(s)	259, 452
Bst6I	CTCTTC	3 cut(s)	194, 440, 645
BstDEI	CTNAG	3 cut(s)	23, 295, 616
BstENI	CCTNNNNNAGG	1 cut(s)	487
BstF5I	GGATG	3 cut(s)	175, 634, 650
BstKTI	GATC	2 cut(s)	705, 734
BstMAI	GTCTC	2 cut(s)	226, 744
BstMBI	GATC	2 cut(s)	702, 731
BstMWI	GCNNNNNNNGC	2 cut(s)	136, 604
BstNI	CCWGG	2 cut(s)	522, 639
BstSCI	CCNGG	4 cut(s)	79, 520, 598, 637
BstSFI	CTRYAG	1 cut(s)	656
BstV1I	GCAGC	2 cut(s)	582, 642
BstX2I	RGATCY	1 cut(s)	702
BstYI	RGATCY	1 cut(s)	702
Bsu15I	ATCGAT	1 cut(s)	730
BsuI	GTATCC	1 cut(s)	472
BsuRI	GGCC	1 cut(s)	206
BsuTUI	ATCGAT	1 cut(s)	730
BtrI	CACGTC	1 cut(s)	236
BtsCI	GGATG	3 cut(s)	175, 634, 650
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	4 cut(s)	20, 21, 543, 560
CciI	TCATGA	1 cut(s)	286
Cfr13I	GGNCC	1 cut(s)	204
ClaI	ATCGAT	1 cut(s)	730
Csp6I	GTAC	1 cut(s)	665
CspCI	CAANNNNNGTGG	2 cut(s)	196, 231
CviAII	CATG	2 cut(s)	33, 287
CviQI	GTAC	1 cut(s)	665
DdeI	CTNAG	3 cut(s)	23, 295, 616
DpnI	GATC	2 cut(s)	704, 733
DpnII	GATC	2 cut(s)	702, 731
Eam1104I	CTCTTC	3 cut(s)	194, 440, 645
EarI	CTCTTC	3 cut(s)	194, 440, 645
EciI	GGCGGA	1 cut(s)	462
Eco130I	CCWWGG	1 cut(s)	508
Eco32I	GATATC	1 cut(s)	589
EcoNI	CCTNNNNNAGG	1 cut(s)	487
EcoRII	CCWGG	2 cut(s)	520, 637
EcoRV	GATATC	1 cut(s)	589
EcoT14I	CCWWGG	1 cut(s)	508
EcoT22I	ATGCAT	1 cut(s)	325
ErhI	CCWWGG	1 cut(s)	508
Esp3I	CGTCTC	1 cut(s)	226
FaeI	CATG	2 cut(s)	36, 290
FaiI	YATR	4 cut(s)	34, 288, 345, 627
FatI	CATG	2 cut(s)	32, 286
Fnu4HI	GCNGC	2 cut(s)	596, 656
FokI	GGATG	3 cut(s)	182, 621, 657
Fsp4HI	GCNGC	2 cut(s)	596, 656
FspBI	CTAG	2 cut(s)	509, 681
GluI	GCNGC	2 cut(s)	596, 656
HaeIII	GGCC	1 cut(s)	206
HapII	CCGG	3 cut(s)	81, 476, 599
Hin1II	CATG	2 cut(s)	36, 290
HindIII	AAGCTT	1 cut(s)	99
HinfI	GANTC	2 cut(s)	398, 548
HpaII	CCGG	3 cut(s)	81, 476, 599
HphI	GGTGA	1 cut(s)	539
Hpy188III	TCNNGA	7 cut(s)	159, 245, 287, 307, 359, 552, 681
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	1 cut(s)	242
HpyCH4III	ACNGT	2 cut(s)	259, 452
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	3 cut(s)	323, 581, 658
HpyF10VI	GCNNNNNNNGC	2 cut(s)	136, 604
HpyF3I	CTNAG	3 cut(s)	23, 295, 616
HpySE526I	ACGT	1 cut(s)	235
Hsp92II	CATG	2 cut(s)	36, 290
Kzo9I	GATC	2 cut(s)	702, 731
LguI	GCTCTTC	2 cut(s)	440, 645
Lsp1109I	GCAGC	2 cut(s)	582, 642
LweI	GCATC	3 cut(s)	310, 332, 643
MaeI	CTAG	2 cut(s)	509, 681
MaeII	ACGT	1 cut(s)	235
MaeIII	GTNAC	3 cut(s)	44, 446, 527
MalI	GATC	2 cut(s)	704, 733
MboI	GATC	2 cut(s)	702, 731
MboII	GAAGA	7 cut(s)	211, 375, 407, 427, 461, 509, 662
MflI	RGATCY	1 cut(s)	702
MluCI	AATT	5 cut(s)	63, 86, 261, 339, 465
MmeI	TCCRAC	1 cut(s)	94
MnlI	CCTC	7 cut(s)	18, 65, 104, 160, 162, 195, 596
Mph1103I	ATGCAT	1 cut(s)	325
MroXI	GAANNNNTTC	1 cut(s)	468
MseI	TTAA	2 cut(s)	90, 429
MslI	CAYNNNNRTG	1 cut(s)	639
MspI	CCGG	3 cut(s)	81, 476, 599
MspR9I	CCNGG	4 cut(s)	81, 522, 600, 639
MvaI	CCWGG	2 cut(s)	522, 639
MwoI	GCNNNNNNNGC	2 cut(s)	136, 604
NciI	CCSGG	2 cut(s)	81, 600
NdeII	GATC	2 cut(s)	702, 731
NlaIII	CATG	2 cut(s)	36, 290
NmuCI	GTSAC	3 cut(s)	44, 446, 527
NsiI	ATGCAT	1 cut(s)	325
PagI	TCATGA	1 cut(s)	286
PciSI	GCTCTTC	2 cut(s)	440, 645
PdmI	GAANNNNTTC	1 cut(s)	468
PfeI	GAWTC	2 cut(s)	398, 548
PfoI	TCCNGGA	1 cut(s)	79
PkrI	GCNGC	2 cut(s)	597, 657
Psp6I	CCWGG	2 cut(s)	520, 637
PspGI	CCWGG	2 cut(s)	520, 637
PspPI	GGNCC	1 cut(s)	204
PstI	CTGCAG	1 cut(s)	660
PsuI	RGATCY	1 cut(s)	702
RsaI	GTAC	1 cut(s)	666
RsaNI	GTAC	1 cut(s)	665
RseI	CAYNNNNRTG	1 cut(s)	639
SapI	GCTCTTC	2 cut(s)	440, 645
SaqAI	TTAA	2 cut(s)	90, 429
SatI	GCNGC	2 cut(s)	596, 656
Sau3AI	GATC	2 cut(s)	702, 731
Sau96I	GGNCC	1 cut(s)	204
ScrFI	CCNGG	4 cut(s)	81, 522, 600, 639
SfaNI	GCATC	3 cut(s)	310, 332, 643
SfcI	CTRYAG	1 cut(s)	656
SmiMI	CAYNNNNRTG	1 cut(s)	639
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	5 cut(s)	63, 86, 261, 339, 465
SsiI	CCGC	1 cut(s)	473
SspMI	CTAG	2 cut(s)	509, 681
StyD4I	CCNGG	4 cut(s)	79, 520, 598, 637
StyI	CCWWGG	1 cut(s)	508
TaaI	ACNGT	2 cut(s)	259, 452
TaiI	ACGT	1 cut(s)	238
TaqI	TCGA	1 cut(s)	730
TasI	AATT	5 cut(s)	63, 86, 261, 339, 465
TfiI	GAWTC	2 cut(s)	398, 548
Tru1I	TTAA	2 cut(s)	90, 429
Tru9I	TTAA	2 cut(s)	90, 429
TscAI	CASTG	4 cut(s)	21, 27, 550, 567
TseFI	GTSAC	3 cut(s)	44, 446, 527
TseI	GCWGC	2 cut(s)	595, 655
Tsp45I	GTSAC	3 cut(s)	44, 446, 527
TspRI	CASTG	4 cut(s)	21, 27, 550, 567
XagI	CCTNNNNNAGG	1 cut(s)	487
XapI	RAATTY	2 cut(s)	86, 465
XbaI	TCTAGA	1 cut(s)	680
XcmI	CCANNNNNNNNNTGG	1 cut(s)	118
XmaJI	CCTAGG	1 cut(s)	508
XmnI	GAANNNNTTC	1 cut(s)	468
XspI	CTAG	2 cut(s)	509, 681
Zsp2I	ATGCAT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.