Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0008049

Physical Location & Seq

Genomic Coordinates Forward (+)

39576465 .. 39582226

Gene Structure 5762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00196550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGTTGGCAGTTGTGCCACGGAGGTTATCATGGGGGCTCCCTCATTTGCTGAGCACACAGAAGCAGAAACCTCCAACGTTCCGAAACTTCTCGGGTAATGCTGCCGGAAACCGCTGTTTGGGCGAGTTTGAACTGAACGCTTCAACTTCCAACGACTTGGTTTCGGTTTCTGTGCCCAAACACTCTCCTCTCTCTGGTACTCTTCTTCCTTTATTTAGCTTCAAAACAAACACACTTGCAGCTTCTTCTGTTTGCATTGGAGGAGGGAGAGGGATTGGATTGGAGGATCTACTTTTGAGCTTTATCTCGGGCAAGAAGAAGGCCACAGAAGTTGCTCACTCGGTTTGGAAACGTGTGGTCCAAAAAGGAGATACGGTAATTGACGCCACTTGTGGCAATGGCCATGATACCTTAGCAATGCTCAAGATGGTAGCTGATGAATCAGGTAAGGGTTCAGTTTATGGAATGGATATTCAGGAAGTTGCTTTACAGAAAACGTCTTCTTTGCTGGAAGAGTCGGTCAGTCCAAAAGAGAAAGAACTTGTTAAGCTCTTCTCCAAATGTCACAGTAAAATGCGTGAAGTTCTTCCGCAGGATACATGTGTTAGGCTTGTTGCTTTCAACCTAGGCTATCTTCCTGGTGGCGACAAAACAATAATCACTGAATCAGGAACAACACTGAAAGCACTGGAAGTTGCAAAAGATATCCTGCTGCCAGGAGGGCTTATCAGCTTAGTGGTTTATGTGGGGCATCCTGGTGGATGGGAAGAACTGCAGATGGTACAACACTTTGTTTCTAAACTATCCGTTGAGAAATGGATCTGCTGTGAGTATCAGTCATCAAATCGATCATGGTCTCCAATACTTGTTTTCTTATTCAAAAGATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

rRNA_methylase

Protein Analysis

296

Amino Acids

32.18

Weight (kDa)

8.84

Isoelectric Point (pI)

35.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_31	PF13847	122 - 168	2.1e-06	Methyltransferase domain
rRNA_methylase	PF06962	153 - 293	5.4e-42	Putative rRNA methylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16445
fragaria_vesca	FvH4_2g12161 FvH4_2g12161 FvH4_2g12161 FvH4_2g12161 FvH4_2g12161
malus_domestica	MD05G1040700.v1.1
prunus_persica	Prupe.8G055300_v2.0.a1 Prupe.8G055300_v2.0.a1 Prupe.8G055300_v2.0.a1 Prupe.8G055300_v2.0.a1 Prupe.8G055300_v2.0.a1
pyrus_communis	pycom05g03330
rosa_chinensis	RchiOBHm_Chr6g0272151
rosa_laevigata	RLG00000013697
rosa_multiflora	Rmu_sc0004606.1_g000002 Rmu_sc0013301.1_g000011
rosa_roxburghii	Rroxscaffold_7G00196550
rosa_rugosa	Rorug06G0066100
rosa_samantha	Rh6AG183300 Rh6BG183800 Rh6CG184600 Rh6DG176300
rosa_wichuraiana	Rw6G015780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	112, 590
AclI	AACGTT	1 cut(s)	77
AclWI	GGATC	2 cut(s)	294, 827
AcoI	YGGCCR	1 cut(s)	400
AcyI	GRCGYC	1 cut(s)	384
AfaI	GTAC	2 cut(s)	199, 783
AfiI	CCNNNNNNNGG	2 cut(s)	118, 194
AflIII	ACRYGT	2 cut(s)	352, 599
AgsI	TTSAA	5 cut(s)	131, 144, 223, 622, 880
AjnI	CCWGG	3 cut(s)	637, 715, 754
AluBI	AGCT	6 cut(s)	219, 242, 300, 434, 550, 732
AluI	AGCT	6 cut(s)	219, 242, 300, 434, 550, 732
Alw21I	GWGCWC	1 cut(s)	56
Alw26I	GTCTC	1 cut(s)	861
AlwI	GGATC	2 cut(s)	294, 827
Ama87I	CYCGRG	2 cut(s)	91, 307
AoxI	GGCC	2 cut(s)	321, 400
ApeKI	GCWGC	3 cut(s)	101, 239, 712
Asp700I	GAANNNNTTC	1 cut(s)	585
AspA2I	CCTAGG	1 cut(s)	625
AspS9I	GGNCC	1 cut(s)	358
AvaI	CYCGRG	2 cut(s)	91, 307
AvaII	GGWCC	1 cut(s)	358
AvrII	CCTAGG	1 cut(s)	625
BaeGI	GKGCMC	1 cut(s)	177
BaeI	ACNNNNGTAYC	2 cut(s)	588, 621
BalI	TGGCCA	1 cut(s)	402
BanII	GRGCYC	1 cut(s)	39
BarI	GAAGNNNNNNTAC	2 cut(s)	471, 503
BbsI	GAAGAC	1 cut(s)	492
Bbv12I	GWGCWC	1 cut(s)	56
BbvI	GCAGC	3 cut(s)	88, 251, 699
BccI	CCATC	3 cut(s)	421, 756, 772
BciT130I	CCWGG	3 cut(s)	639, 717, 756
BciVI	GTATCC	1 cut(s)	589
BcoDI	GTCTC	1 cut(s)	861
BfaI	CTAG	1 cut(s)	626
BfmI	CTRYAG	1 cut(s)	773
BfuI	GTATCC	1 cut(s)	589
BglI	GCCNNNNNGGC	1 cut(s)	721
BisI	GCNGC	3 cut(s)	102, 240, 713
BlnI	CCTAGG	1 cut(s)	625
BlpI	GCTNAGC	1 cut(s)	50
BlsI	GCNGC	3 cut(s)	103, 241, 714
Bme1390I	CCNGG	3 cut(s)	639, 717, 756
Bme18I	GGWCC	1 cut(s)	358
BmeT110I	CYCGRG	2 cut(s)	91, 307
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	1 cut(s)	38
BmrFI	CCNGG	3 cut(s)	639, 717, 756
BmsI	GCATC	2 cut(s)	760, 875
BpiI	GAAGAC	1 cut(s)	492
Bpu10I	CCTNAGC	1 cut(s)	412
Bpu1102I	GCTNAGC	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	407
Bsa29I	ATCGAT	1 cut(s)	847
BsaHI	GRCGYC	1 cut(s)	384
BsaI	GGTCTC	1 cut(s)	861
BsaJI	CCNNGG	2 cut(s)	17, 625
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 194
Bse1I	ACTGG	1 cut(s)	693
Bse3DI	GCAATG	2 cut(s)	403, 423
BseBI	CCWGG	3 cut(s)	639, 717, 756
BseCI	ATCGAT	1 cut(s)	847
BseDI	CCNNGG	2 cut(s)	17, 625
BseGI	GGATG	2 cut(s)	751, 767
BseLI	CCNNNNNNNGG	2 cut(s)	118, 194
BseMI	GCAATG	2 cut(s)	403, 423
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	693
BseRI	GAGGAG	2 cut(s)	177, 276
BseSI	GKGCMC	1 cut(s)	177
BseXI	GCAGC	3 cut(s)	88, 251, 699
BshFI	GGCC	2 cut(s)	323, 402
BshVI	ATCGAT	1 cut(s)	847
BsiHKAI	GWGCWC	1 cut(s)	56
BsiHKCI	CYCGRG	2 cut(s)	91, 307
BsiSI	CCGG	1 cut(s)	105
BslI	CCNNNNNNNGG	2 cut(s)	118, 194
BsmAI	GTCTC	1 cut(s)	861
BsnI	GGCC	2 cut(s)	323, 402
Bso31I	GGTCTC	1 cut(s)	861
BsoBI	CYCGRG	2 cut(s)	91, 307
Bsp1286I	GDGCHC	3 cut(s)	39, 56, 177
Bsp143I	GATC	3 cut(s)	286, 819, 848
Bsp1720I	GCTNAGC	1 cut(s)	50
BspACI	CCGC	2 cut(s)	112, 590
BspANI	GGCC	2 cut(s)	323, 402
BspCNI	CTCAG	1 cut(s)	42
BspDI	ATCGAT	1 cut(s)	847
BspLI	GGNNCC	1 cut(s)	38
BspMAI	CTGCAG	1 cut(s)	777
BspPI	GGATC	2 cut(s)	294, 827
BspQI	GCTCTTC	1 cut(s)	557
BspTNI	GGTCTC	1 cut(s)	861
BsrDI	GCAATG	2 cut(s)	403, 423
BsrI	ACTGG	1 cut(s)	693
BssECI	CCNNGG	2 cut(s)	17, 625
BssMI	GATC	3 cut(s)	286, 819, 848
BssNI	GRCGYC	1 cut(s)	384
BssT1I	CCWWGG	1 cut(s)	625
Bst2UI	CCWGG	3 cut(s)	639, 717, 756
Bst4CI	ACNGT	2 cut(s)	376, 569
Bst6I	CTCTTC	3 cut(s)	207, 507, 557
BstACI	GRCGYC	1 cut(s)	384
BstDEI	CTNAG	3 cut(s)	50, 412, 733
BstDSI	CCRYGG	1 cut(s)	17
BstF5I	GGATG	2 cut(s)	751, 767
BstKTI	GATC	3 cut(s)	289, 822, 851
BstMAI	GTCTC	1 cut(s)	861
BstMBI	GATC	3 cut(s)	286, 819, 848
BstMWI	GCNNNNNNNGC	2 cut(s)	120, 721
BstNI	CCWGG	3 cut(s)	639, 717, 756
BstNSI	RCATGY	1 cut(s)	603
BstSCI	CCNGG	3 cut(s)	637, 715, 754
BstSFI	CTRYAG	1 cut(s)	773
BstSLI	GKGCMC	1 cut(s)	177
BstV1I	GCAGC	3 cut(s)	88, 251, 699
BstV2I	GAAGAC	1 cut(s)	492
BstX2I	RGATCY	2 cut(s)	286, 819
BstXI	CCANNNNNNTGG	1 cut(s)	157
BstYI	RGATCY	2 cut(s)	286, 819
Bsu15I	ATCGAT	1 cut(s)	847
BsuI	GTATCC	1 cut(s)	589
BsuRI	GGCC	2 cut(s)	323, 402
BsuTUI	ATCGAT	1 cut(s)	847
BtgI	CCRYGG	1 cut(s)	17
BtsCI	GGATG	2 cut(s)	751, 767
BtsIMutI	CAGTG	3 cut(s)	660, 677, 686
Cfr13I	GGNCC	1 cut(s)	358
ClaI	ATCGAT	1 cut(s)	847
CseI	GACGC	1 cut(s)	392
Csp6I	GTAC	2 cut(s)	198, 782
CspCI	CAANNNNNGTGG	2 cut(s)	313, 348
CviAII	CATG	4 cut(s)	30, 404, 600, 852
CviQI	GTAC	2 cut(s)	198, 782
DdeI	CTNAG	3 cut(s)	50, 412, 733
DpnI	GATC	3 cut(s)	288, 821, 850
DpnII	GATC	3 cut(s)	286, 819, 848
EaeI	YGGCCR	1 cut(s)	400
Eam1104I	CTCTTC	3 cut(s)	207, 507, 557
EarI	CTCTTC	3 cut(s)	207, 507, 557
Eco130I	CCWWGG	1 cut(s)	625
Eco24I	GRGCYC	1 cut(s)	39
Eco31I	GGTCTC	1 cut(s)	861
Eco32I	GATATC	1 cut(s)	706
Eco47I	GGWCC	1 cut(s)	358
Eco88I	CYCGRG	2 cut(s)	91, 307
EcoRII	CCWGG	3 cut(s)	637, 715, 754
EcoRV	GATATC	1 cut(s)	706
EcoT14I	CCWWGG	1 cut(s)	625
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	625
FaeI	CATG	4 cut(s)	33, 407, 603, 855
FaiI	YATR	6 cut(s)	31, 405, 462, 601, 744, 853
FatI	CATG	4 cut(s)	29, 403, 599, 851
Fnu4HI	GCNGC	3 cut(s)	102, 240, 713
FokI	GGATG	2 cut(s)	738, 774
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	3 cut(s)	102, 240, 713
FspBI	CTAG	1 cut(s)	626
GluI	GCNGC	3 cut(s)	102, 240, 713
HaeIII	GGCC	2 cut(s)	323, 402
HapII	CCGG	1 cut(s)	105
HgaI	GACGC	1 cut(s)	392
Hin1I	GRCGYC	1 cut(s)	384
Hin1II	CATG	4 cut(s)	33, 407, 603, 855
HinfI	GANTC	3 cut(s)	440, 515, 665
HpaII	CCGG	1 cut(s)	105
Hpy188I	TCNGA	1 cut(s)	83
Hpy188III	TCNNGA	3 cut(s)	424, 476, 669
HpyAV	CCTTC	1 cut(s)	313
HpyCH4III	ACNGT	2 cut(s)	376, 569
HpyCH4IV	ACGT	3 cut(s)	77, 352, 497
HpyCH4V	TGCA	4 cut(s)	239, 255, 698, 775
HpyF10VI	GCNNNNNNNGC	2 cut(s)	120, 721
HpyF3I	CTNAG	3 cut(s)	50, 412, 733
HpySE526I	ACGT	3 cut(s)	77, 352, 497
Hsp92I	GRCGYC	1 cut(s)	384
Hsp92II	CATG	4 cut(s)	33, 407, 603, 855
Kzo9I	GATC	3 cut(s)	286, 819, 848
LguI	GCTCTTC	1 cut(s)	557
LmnI	GCTCC	1 cut(s)	42
Lsp1109I	GCAGC	3 cut(s)	88, 251, 699
LweI	GCATC	2 cut(s)	760, 875
MaeI	CTAG	1 cut(s)	626
MaeII	ACGT	3 cut(s)	77, 352, 497
MaeIII	GTNAC	1 cut(s)	563
MalI	GATC	3 cut(s)	288, 821, 850
MboI	GATC	3 cut(s)	286, 819, 848
MflI	RGATCY	2 cut(s)	286, 819
MhlI	GDGCHC	3 cut(s)	39, 56, 177
MlsI	TGGCCA	1 cut(s)	402
MluCI	AATT	1 cut(s)	378
MluNI	TGGCCA	1 cut(s)	402
MlyI	GAGTC	1 cut(s)	524
MmeI	TCCRAC	2 cut(s)	98, 174
MnlI	CCTC	9 cut(s)	15, 51, 81, 198, 254, 257, 263, 277, 713
Mox20I	TGGCCA	1 cut(s)	402
MroXI	GAANNNNTTC	1 cut(s)	585
MscI	TGGCCA	1 cut(s)	402
MseI	TTAA	1 cut(s)	546
MslI	CAYNNNNRTG	1 cut(s)	756
Msp20I	TGGCCA	1 cut(s)	402
MspA1I	CMGCKG	1 cut(s)	114
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	3 cut(s)	639, 717, 756
MvaI	CCWGG	3 cut(s)	639, 717, 756
MwoI	GCNNNNNNNGC	2 cut(s)	120, 721
NdeII	GATC	3 cut(s)	286, 819, 848
NlaIII	CATG	4 cut(s)	33, 407, 603, 855
NlaIV	GGNNCC	1 cut(s)	38
NmuCI	GTSAC	1 cut(s)	563
NspI	RCATGY	1 cut(s)	603
PciI	ACATGT	1 cut(s)	599
PciSI	GCTCTTC	1 cut(s)	557
PdmI	GAANNNNTTC	1 cut(s)	585
PfeI	GAWTC	2 cut(s)	440, 665
PkrI	GCNGC	3 cut(s)	103, 241, 714
PleI	GAGTC	1 cut(s)	523
PpsI	GAGTC	1 cut(s)	523
PscI	ACATGT	1 cut(s)	599
Psp1406I	AACGTT	1 cut(s)	77
Psp6I	CCWGG	3 cut(s)	637, 715, 754
PspGI	CCWGG	3 cut(s)	637, 715, 754
PspN4I	GGNNCC	1 cut(s)	38
PspPI	GGNCC	1 cut(s)	358
PstI	CTGCAG	1 cut(s)	777
PsuI	RGATCY	2 cut(s)	286, 819
RsaI	GTAC	2 cut(s)	199, 783
RsaNI	GTAC	2 cut(s)	198, 782
RseI	CAYNNNNRTG	1 cut(s)	756
SapI	GCTCTTC	1 cut(s)	557
SaqAI	TTAA	1 cut(s)	546
SatI	GCNGC	3 cut(s)	102, 240, 713
Sau3AI	GATC	3 cut(s)	286, 819, 848
Sau96I	GGNCC	1 cut(s)	358
SchI	GAGTC	1 cut(s)	524
ScrFI	CCNGG	3 cut(s)	639, 717, 756
SduI	GDGCHC	3 cut(s)	39, 56, 177
SfaNI	GCATC	2 cut(s)	760, 875
SfcI	CTRYAG	1 cut(s)	773
SinI	GGWCC	1 cut(s)	358
SmiMI	CAYNNNNRTG	1 cut(s)	756
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	1 cut(s)	378
SsiI	CCGC	2 cut(s)	112, 590
SspMI	CTAG	1 cut(s)	626
StyD4I	CCNGG	3 cut(s)	637, 715, 754
StyI	CCWWGG	1 cut(s)	625
TaaI	ACNGT	2 cut(s)	376, 569
TaiI	ACGT	3 cut(s)	80, 355, 500
TaqI	TCGA	1 cut(s)	847
TaqII	GACCGA	1 cut(s)	508
TasI	AATT	1 cut(s)	378
TfiI	GAWTC	2 cut(s)	440, 665
Tru1I	TTAA	1 cut(s)	546
Tru9I	TTAA	1 cut(s)	546
TscAI	CASTG	3 cut(s)	667, 684, 693
TseFI	GTSAC	1 cut(s)	563
TseI	GCWGC	3 cut(s)	101, 239, 712
Tsp45I	GTSAC	1 cut(s)	563
TspDTI	ATGAA	1 cut(s)	453
TspGWI	ACGGA	2 cut(s)	34, 796
TspRI	CASTG	3 cut(s)	667, 684, 693
VpaK11BI	GGWCC	1 cut(s)	358
XceI	RCATGY	1 cut(s)	603
XmaJI	CCTAGG	1 cut(s)	625
XmnI	GAANNNNTTC	1 cut(s)	585
XspI	CTAG	1 cut(s)	626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.