Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0008049

Physical Location & Seq

Genomic Coordinates Forward (+)

6906328 .. 6910957

Gene Structure 4630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1040700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGCTGGCAGTGACTGTGCCGGTCAGATTGAGATTTGGTGCGCATTTGCTTGGGATACACAAACCCCTGACGCTAATTCCAACTTCTTCTTCCTCAACACGCTGCTTCTTCCTCTTTCCCTCTCCTCCTACTCGAAACGTTTCGCTGAGTCAGACTCCTCGTGACCTCCTCCGCCGAAACGTTTCCCAAACCCCTGCCCCTGCGGCCAGTGATTCCGTTTCCGTTTCCGTTTCTTTCCCGAAAGACTCTCCTCTCTTTGGATTGGAGGATCTACTGGTGAGCTTTATCTTGGGGAAGAAGAGGGCCACAGAAGTTTCCCACTTGGTATGGAAACATGTTGTCCAAAAAGGTGATACGGTCATTGATGCCACTTGTGGCAATGGTCATGATACCTTAGCGATGCTCAAGATGGTCGCTGATGAATCGGGAAAGGGTTCTGTTTACGGACTTGACATTCAGGAAGCTGCTTTACAGAAAACTTCTTCTCTGCTGGAAGAATCGGTCACTCCAAATGAGAAGGGACTCGTTAAGCTGTTCTCCAAATGCCACAGTAAAATGCATGAAGTTCTACCAAGGAATACATCTGTTAGGCTTGTCGCTTTCAACCTAGGCTATCTTCCAGGGGGTGACAAATCACTCACCACGCAGTCAGACACAACACTAAAAGCATTGGAAGCTGCAAAAGGTATCCTGATGGATGGAGGGCTTATCAGCTTAGTGGTTTATGTGGGGCATCCTGGTGGATGGGAAGAACTGAAGACCGTCCAAGATTTCATCTCCAAATTACCGGTTGAGATGTGGATCTGCTCCGAGTTTCAGACGGTAAACCGATCATGGTCTCCAGTTCTTGTTTTCATATTCAAGAGATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

rRNA_methylase

Protein Analysis

291

Amino Acids

31.65

Weight (kDa)

8.93

Isoelectric Point (pI)

44.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_31	PF13847	116 - 162	5.3e-07	Methyltransferase domain
rRNA_methylase	PF06962	147 - 287	6.1e-42	Putative rRNA methylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16445
fragaria_vesca	FvH4_2g12161 FvH4_2g12161 FvH4_2g12161 FvH4_2g12161 FvH4_2g12161
malus_domestica	MD05G1040700.v1.1
prunus_persica	Prupe.8G055300_v2.0.a1 Prupe.8G055300_v2.0.a1 Prupe.8G055300_v2.0.a1 Prupe.8G055300_v2.0.a1 Prupe.8G055300_v2.0.a1
pyrus_communis	pycom05g03330
rosa_chinensis	RchiOBHm_Chr6g0272151
rosa_laevigata	RLG00000013697
rosa_multiflora	Rmu_sc0004606.1_g000002 Rmu_sc0013301.1_g000011
rosa_roxburghii	Rroxscaffold_7G00196550
rosa_rugosa	Rorug06G0066100
rosa_samantha	Rh6AG183300 Rh6BG183800 Rh6CG184600 Rh6DG176300
rosa_wichuraiana	Rw6G015780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	42
AciI	CCGC	2 cut(s)	172, 203
AclI	AACGTT	2 cut(s)	138, 180
AclWI	GGATC	2 cut(s)	276, 809
AcoI	YGGCCR	1 cut(s)	204
AcuI	CTGAAG	1 cut(s)	776
AfiI	CCNNNNNNNGG	1 cut(s)	257
AflIII	ACRYGT	1 cut(s)	334
AgeI	ACCGGT	1 cut(s)	787
AgsI	TTSAA	2 cut(s)	604, 862
AjnI	CCWGG	2 cut(s)	619, 736
AjuI	GAANNNNNNNTTGG	2 cut(s)	73, 105
AluBI	AGCT	5 cut(s)	282, 464, 532, 677, 714
AluI	AGCT	5 cut(s)	282, 464, 532, 677, 714
Alw26I	GTCTC	1 cut(s)	843
AlwI	GGATC	2 cut(s)	276, 809
AlwNI	CAGNNNCTG	1 cut(s)	14
AoxI	GGCC	2 cut(s)	204, 303
ApeKI	GCWGC	3 cut(s)	102, 464, 677
AsiGI	ACCGGT	1 cut(s)	787
Asp700I	GAANNNNTTC	3 cut(s)	139, 181, 433
AspA2I	CCTAGG	1 cut(s)	607
AspLEI	GCGC	1 cut(s)	43
AspS9I	GGNCC	1 cut(s)	303
AsuHPI	GGTGA	4 cut(s)	289, 362, 631, 638
AvrII	CCTAGG	1 cut(s)	607
BarI	GAAGNNNNNNTAC	2 cut(s)	453, 485
BauI	CACGAG	1 cut(s)	159
BbsI	GAAGAC	1 cut(s)	764
BbvI	GCAGC	3 cut(s)	89, 451, 664
BccI	CCATC	4 cut(s)	403, 688, 692, 738
BciT130I	CCWGG	2 cut(s)	621, 738
BciVI	GTATCC	2 cut(s)	48, 698
BcoDI	GTCTC	1 cut(s)	843
BfaI	CTAG	1 cut(s)	608
BfuI	GTATCC	2 cut(s)	48, 698
BglI	GCCNNNNNGGC	1 cut(s)	203
BisI	GCNGC	4 cut(s)	103, 204, 465, 678
BlnI	CCTAGG	1 cut(s)	607
BlsI	GCNGC	4 cut(s)	104, 205, 466, 679
Bme1390I	CCNGG	2 cut(s)	621, 738
BmgT120I	GGNCC	1 cut(s)	303
BmrFI	CCNGG	2 cut(s)	621, 738
BmsI	GCATC	3 cut(s)	355, 390, 742
BpiI	GAAGAC	1 cut(s)	764
BplI	GAGNNNNNCTC	2 cut(s)	139, 171
BpmI	CTGGAG	1 cut(s)	825
Bpu10I	CCTNAGC	1 cut(s)	394
BpuEI	CTTGAG	1 cut(s)	389
BsaBI	GATNNNNATC	1 cut(s)	800
BsaI	GGTCTC	1 cut(s)	843
BsaJI	CCNNGG	3 cut(s)	572, 607, 620
BsaWI	WCCGGW	1 cut(s)	787
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
Bse118I	RCCGGY	2 cut(s)	19, 787
Bse1I	ACTGG	3 cut(s)	207, 279, 842
Bse3DI	GCAATG	1 cut(s)	385
Bse8I	GATNNNNATC	1 cut(s)	800
BseBI	CCWGG	2 cut(s)	621, 738
BseDI	CCNNGG	3 cut(s)	572, 607, 620
BseGI	GGATG	3 cut(s)	703, 733, 749
BseJI	GATNNNNATC	1 cut(s)	800
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseMI	GCAATG	1 cut(s)	385
BseMII	CTCAG	1 cut(s)	137
BseNI	ACTGG	3 cut(s)	207, 279, 842
BseRI	GAGGAG	4 cut(s)	114, 147, 158, 240
BseXI	GCAGC	3 cut(s)	89, 451, 664
BshFI	GGCC	2 cut(s)	206, 305
BshTI	ACCGGT	1 cut(s)	787
BsiSI	CCGG	2 cut(s)	20, 788
BslFI	GGGAC	1 cut(s)	534
BslI	CCNNNNNNNGG	1 cut(s)	257
BsmAI	GTCTC	1 cut(s)	843
BsmFI	GGGAC	1 cut(s)	534
BsnI	GGCC	2 cut(s)	206, 305
Bso31I	GGTCTC	1 cut(s)	843
Bsp143I	GATC	3 cut(s)	268, 801, 830
BspACI	CCGC	2 cut(s)	172, 203
BspANI	GGCC	2 cut(s)	206, 305
BspCNI	CTCAG	1 cut(s)	138
BspHI	TCATGA	1 cut(s)	385
BspPI	GGATC	2 cut(s)	276, 809
BspTNI	GGTCTC	1 cut(s)	843
BsrDI	GCAATG	1 cut(s)	385
BsrFI	RCCGGY	2 cut(s)	19, 787
BsrI	ACTGG	3 cut(s)	207, 279, 842
BssAI	RCCGGY	2 cut(s)	19, 787
BssECI	CCNNGG	3 cut(s)	572, 607, 620
BssMI	GATC	3 cut(s)	268, 801, 830
BssSI	CACGAG	1 cut(s)	159
BssT1I	CCWWGG	2 cut(s)	572, 607
Bst2BI	CACGAG	1 cut(s)	159
Bst2UI	CCWGG	2 cut(s)	621, 738
Bst4CI	ACNGT	5 cut(s)	16, 358, 551, 763, 823
Bst6I	CTCTTC	1 cut(s)	293
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	3 cut(s)	146, 394, 715
BstF5I	GGATG	3 cut(s)	703, 733, 749
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	3 cut(s)	271, 804, 833
BstMAI	GTCTC	1 cut(s)	843
BstMBI	GATC	3 cut(s)	268, 801, 830
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 674
BstNI	CCWGG	2 cut(s)	621, 738
BstNSI	RCATGY	1 cut(s)	338
BstSCI	CCNGG	2 cut(s)	619, 736
BstV1I	GCAGC	3 cut(s)	89, 451, 664
BstV2I	GAAGAC	1 cut(s)	764
BstX2I	RGATCY	2 cut(s)	268, 801
BstYI	RGATCY	2 cut(s)	268, 801
BsuI	GTATCC	2 cut(s)	48, 698
BsuRI	GGCC	2 cut(s)	206, 305
BtgZI	GCGATG	1 cut(s)	413
BtsCI	GGATG	3 cut(s)	703, 733, 749
BtsI	GCAGTG	1 cut(s)	15
BtsIMutI	CAGTG	2 cut(s)	15, 214
Cac8I	GCNNGC	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	14
CciI	TCATGA	1 cut(s)	385
CfoI	GCGC	1 cut(s)	43
Cfr10I	RCCGGY	2 cut(s)	19, 787
Cfr13I	GGNCC	1 cut(s)	303
CseI	GACGC	1 cut(s)	79
CspAI	ACCGGT	1 cut(s)	787
CviAII	CATG	4 cut(s)	335, 386, 560, 834
DdeI	CTNAG	3 cut(s)	146, 394, 715
DpnI	GATC	3 cut(s)	270, 803, 832
DpnII	GATC	3 cut(s)	268, 801, 830
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	293
EciI	GGCGGA	1 cut(s)	161
Eco130I	CCWWGG	2 cut(s)	572, 607
Eco31I	GGTCTC	1 cut(s)	843
Eco57I	CTGAAG	1 cut(s)	776
EcoRII	CCWGG	2 cut(s)	619, 736
EcoT14I	CCWWGG	2 cut(s)	572, 607
EcoT22I	ATGCAT	1 cut(s)	561
ErhI	CCWWGG	2 cut(s)	572, 607
FaeI	CATG	4 cut(s)	338, 389, 563, 837
FaiI	YATR	7 cut(s)	328, 336, 387, 561, 726, 835, 857
FaqI	GGGAC	1 cut(s)	534
FatI	CATG	4 cut(s)	334, 385, 559, 833
Fnu4HI	GCNGC	4 cut(s)	103, 204, 465, 678
FokI	GGATG	3 cut(s)	710, 720, 756
Fsp4HI	GCNGC	4 cut(s)	103, 204, 465, 678
FspAI	RTGCGCAY	1 cut(s)	42
FspBI	CTAG	1 cut(s)	608
FspI	TGCGCA	1 cut(s)	42
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	4 cut(s)	103, 204, 465, 678
GsuI	CTGGAG	1 cut(s)	825
HaeIII	GGCC	2 cut(s)	206, 305
HapII	CCGG	2 cut(s)	20, 788
HgaI	GACGC	1 cut(s)	79
HhaI	GCGC	1 cut(s)	43
Hin1II	CATG	4 cut(s)	338, 389, 563, 837
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HinfI	GANTC	7 cut(s)	148, 154, 212, 245, 422, 497, 522
HpaII	CCGG	2 cut(s)	20, 788
HphI	GGTGA	4 cut(s)	289, 362, 631, 638
Hpy166II	GTNNAC	2 cut(s)	442, 826
Hpy188I	TCNGA	5 cut(s)	26, 153, 652, 811, 819
Hpy188III	TCNNGA	8 cut(s)	161, 238, 386, 406, 426, 458, 691, 862
Hpy8I	GTNNAC	2 cut(s)	442, 826
HpyAV	CCTTC	1 cut(s)	511
HpyCH4III	ACNGT	5 cut(s)	16, 358, 551, 763, 823
HpyCH4IV	ACGT	2 cut(s)	138, 180
HpyCH4V	TGCA	2 cut(s)	559, 680
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 674
HpyF3I	CTNAG	3 cut(s)	146, 394, 715
HpySE526I	ACGT	2 cut(s)	138, 180
Hsp92II	CATG	4 cut(s)	338, 389, 563, 837
HspAI	GCGC	1 cut(s)	41
Kzo9I	GATC	3 cut(s)	268, 801, 830
LmnI	GCTCC	1 cut(s)	812
Lsp1109I	GCAGC	3 cut(s)	89, 451, 664
LweI	GCATC	3 cut(s)	355, 390, 742
MaeI	CTAG	1 cut(s)	608
MaeII	ACGT	2 cut(s)	138, 180
MaeIII	GTNAC	4 cut(s)	10, 161, 502, 626
MalI	GATC	3 cut(s)	270, 803, 832
MboI	GATC	3 cut(s)	268, 801, 830
MflI	RGATCY	2 cut(s)	268, 801
MluCI	AATT	2 cut(s)	75, 782
MlyI	GAGTC	4 cut(s)	148, 157, 239, 516
MmeI	TCCRAC	1 cut(s)	104
Mph1103I	ATGCAT	1 cut(s)	561
MroXI	GAANNNNTTC	3 cut(s)	139, 181, 433
MseI	TTAA	1 cut(s)	528
MslI	CAYNNNNRTG	1 cut(s)	738
MspI	CCGG	2 cut(s)	20, 788
MspR9I	CCNGG	2 cut(s)	621, 738
MvaI	CCWGG	2 cut(s)	621, 738
MwoI	GCNNNNNNNGC	2 cut(s)	203, 674
NdeII	GATC	3 cut(s)	268, 801, 830
NlaIII	CATG	4 cut(s)	338, 389, 563, 837
NmuCI	GTSAC	4 cut(s)	10, 161, 502, 626
NsbI	TGCGCA	1 cut(s)	42
NsiI	ATGCAT	1 cut(s)	561
NspI	RCATGY	1 cut(s)	338
PagI	TCATGA	1 cut(s)	385
PciI	ACATGT	1 cut(s)	334
PdmI	GAANNNNTTC	3 cut(s)	139, 181, 433
PfeI	GAWTC	3 cut(s)	212, 422, 497
PinAI	ACCGGT	1 cut(s)	787
PkrI	GCNGC	4 cut(s)	104, 205, 466, 679
PleI	GAGTC	4 cut(s)	148, 156, 239, 516
PpsI	GAGTC	4 cut(s)	148, 156, 239, 516
PscI	ACATGT	1 cut(s)	334
Psp1406I	AACGTT	2 cut(s)	138, 180
Psp6I	CCWGG	2 cut(s)	619, 736
PspGI	CCWGG	2 cut(s)	619, 736
PspPI	GGNCC	1 cut(s)	303
PstNI	CAGNNNCTG	1 cut(s)	14
PsuI	RGATCY	2 cut(s)	268, 801
RseI	CAYNNNNRTG	1 cut(s)	738
SaqAI	TTAA	1 cut(s)	528
SatI	GCNGC	4 cut(s)	103, 204, 465, 678
Sau3AI	GATC	3 cut(s)	268, 801, 830
Sau96I	GGNCC	1 cut(s)	303
SchI	GAGTC	4 cut(s)	148, 157, 239, 516
ScrFI	CCNGG	2 cut(s)	621, 738
SfaNI	GCATC	3 cut(s)	355, 390, 742
SmiMI	CAYNNNNRTG	1 cut(s)	738
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
Sse9I	AATT	2 cut(s)	75, 782
SsiI	CCGC	2 cut(s)	172, 203
SspMI	CTAG	1 cut(s)	608
StyD4I	CCNGG	2 cut(s)	619, 736
StyI	CCWWGG	2 cut(s)	572, 607
TaaI	ACNGT	5 cut(s)	16, 358, 551, 763, 823
TaiI	ACGT	2 cut(s)	141, 183
TaqI	TCGA	1 cut(s)	133
TaqII	GACCGA	1 cut(s)	490
TasI	AATT	2 cut(s)	75, 782
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	3 cut(s)	212, 422, 497
Tru1I	TTAA	1 cut(s)	528
Tru9I	TTAA	1 cut(s)	528
TscAI	CASTG	2 cut(s)	15, 214
TseFI	GTSAC	4 cut(s)	10, 161, 502, 626
TseI	GCWGC	3 cut(s)	102, 464, 677
Tsp45I	GTSAC	4 cut(s)	10, 161, 502, 626
TspDTI	ATGAA	4 cut(s)	435, 576, 763, 844
TspGWI	ACGGA	4 cut(s)	205, 211, 217, 459
TspRI	CASTG	2 cut(s)	15, 214
XceI	RCATGY	1 cut(s)	338
XmaJI	CCTAGG	1 cut(s)	607
XmnI	GAANNNNTTC	3 cut(s)	139, 181, 433
XspI	CTAG	1 cut(s)	608
Zsp2I	ATGCAT	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.