Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004606.1

Orthogroup ID

OG0008049

Physical Location & Seq

Genomic Coordinates Reverse (-)

2617 .. 7262

Gene Structure 4646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004606.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

atgttggcagttgtgccacgggggttatcatgggggctccctcatctgctgagcacacagaagcagaaacctccaacgttccgaaacttttcgggtaattctgccggaaaccgctggttgggcaagtttgaactgaacgctgcaacttccaacgacttggtttcggtttctgtgcccaaacactctcctctctctggattggaggatctacttttgagctttatctcgggcaagaagaaggccacagaagttgctcactcggtttggaaacgtgtggtccaaaaaggagatacggtaattgatgccacttgtggcaatggccatgataccttagcaatgctcaagatggtagctgatgaatcgggtaagggttcagtttatggaatggatattcaggaagttgctttacagaaaacttcttctttgctggaagagtcggtcagtccaaaagagaaagaacttgttaagctcttctccaaatgtcacagtaaaatgcgtgaagttcttccgcaggatacatgtgttaggcttgttgctttcaacctaggctatcttcctggtggcgacaaaacaataatcactgaatcaggaacaacactgaaagcactggaagttgcaaaagatatcctactgccaggagggcttatcagcttagtggtttatgtggggcatcctggtggatgggaagaactgcagatggtacaacactttgtttctaaactatccgttgagaaatggatctgctcttcacagctctccttagtagacgaggatgaagttgtggatgtgaatgaggtttttggtgcctactgccttggatgtgcagctgtatcattttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

rRNA_methylase

Protein Analysis

279

Amino Acids

30.2

Weight (kDa)

6.18

Isoelectric Point (pI)

30.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16445
fragaria_vesca	FvH4_2g12161 FvH4_2g12161 FvH4_2g12161 FvH4_2g12161 FvH4_2g12161
malus_domestica	MD05G1040700.v1.1
prunus_persica	Prupe.8G055300_v2.0.a1 Prupe.8G055300_v2.0.a1 Prupe.8G055300_v2.0.a1 Prupe.8G055300_v2.0.a1 Prupe.8G055300_v2.0.a1
pyrus_communis	pycom05g03330
rosa_chinensis	RchiOBHm_Chr6g0272151
rosa_laevigata	RLG00000013697
rosa_multiflora	Rmu_sc0004606.1_g000002 Rmu_sc0013301.1_g000011
rosa_roxburghii	Rroxscaffold_7G00196550
rosa_rugosa	Rorug06G0066100
rosa_samantha	Rh6AG183300 Rh6BG183800 Rh6CG184600 Rh6DG176300
rosa_wichuraiana	Rw6G015780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	803
AccI	GTMKAC	1 cut(s)	765
AciI	CCGC	2 cut(s)	112, 509
AclI	AACGTT	1 cut(s)	77
AclWI	GGATC	2 cut(s)	213, 746
AcoI	YGGCCR	1 cut(s)	319
AfaI	GTAC	1 cut(s)	702
AfiI	CCNNNNNNNGG	2 cut(s)	118, 194
AflIII	ACRYGT	2 cut(s)	271, 518
AgsI	TTSAA	2 cut(s)	131, 541
AjnI	CCWGG	3 cut(s)	556, 634, 673
AluBI	AGCT	6 cut(s)	219, 353, 469, 651, 754, 827
AluI	AGCT	6 cut(s)	219, 353, 469, 651, 754, 827
Alw21I	GWGCWC	1 cut(s)	56
AlwI	GGATC	2 cut(s)	213, 746
Ama87I	CYCGRG	1 cut(s)	226
AoxI	GGCC	2 cut(s)	240, 319
ApeKI	GCWGC	2 cut(s)	140, 824
Asp700I	GAANNNNTTC	2 cut(s)	88, 504
AspA2I	CCTAGG	1 cut(s)	544
AspS9I	GGNCC	1 cut(s)	277
AvaI	CYCGRG	1 cut(s)	226
AvaII	GGWCC	1 cut(s)	277
AvrII	CCTAGG	1 cut(s)	544
BaeGI	GKGCMC	1 cut(s)	177
BaeI	ACNNNNGTAYC	2 cut(s)	507, 540
BalI	TGGCCA	1 cut(s)	321
BanI	GGYRCC	1 cut(s)	803
BanII	GRGCYC	1 cut(s)	39
BarI	GAAGNNNNNNTAC	2 cut(s)	390, 422
Bbv12I	GWGCWC	1 cut(s)	56
BbvI	GCAGC	2 cut(s)	127, 836
BccI	CCATC	3 cut(s)	340, 675, 691
BciT130I	CCWGG	3 cut(s)	558, 636, 675
BciVI	GTATCC	1 cut(s)	508
BfaI	CTAG	1 cut(s)	545
BfmI	CTRYAG	1 cut(s)	692
BfuI	GTATCC	1 cut(s)	508
BglI	GCCNNNNNGGC	1 cut(s)	640
BisI	GCNGC	2 cut(s)	141, 825
BlnI	CCTAGG	1 cut(s)	544
BlpI	GCTNAGC	1 cut(s)	50
BlsI	GCNGC	2 cut(s)	142, 826
Bme1390I	CCNGG	3 cut(s)	558, 636, 675
Bme18I	GGWCC	1 cut(s)	277
BmeT110I	CYCGRG	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	2 cut(s)	38, 805
BmrFI	CCNGG	3 cut(s)	558, 636, 675
BmsI	GCATC	2 cut(s)	292, 679
Bpu10I	CCTNAGC	1 cut(s)	331
Bpu1102I	GCTNAGC	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	326
BsaJI	CCNNGG	3 cut(s)	17, 544, 814
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 194
Bse1I	ACTGG	1 cut(s)	612
Bse3DI	GCAATG	2 cut(s)	322, 342
BseBI	CCWGG	3 cut(s)	558, 636, 675
BseDI	CCNNGG	3 cut(s)	17, 544, 814
BseGI	GGATG	5 cut(s)	670, 686, 778, 790, 824
BseLI	CCNNNNNNNGG	2 cut(s)	118, 194
BseMI	GCAATG	2 cut(s)	322, 342
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	612
BseRI	GAGGAG	1 cut(s)	177
BseSI	GKGCMC	1 cut(s)	177
BseXI	GCAGC	2 cut(s)	127, 836
BshFI	GGCC	2 cut(s)	242, 321
BshNI	GGYRCC	1 cut(s)	803
BsiHKAI	GWGCWC	1 cut(s)	56
BsiHKCI	CYCGRG	1 cut(s)	226
BsiSI	CCGG	1 cut(s)	105
BslI	CCNNNNNNNGG	2 cut(s)	118, 194
BsnI	GGCC	2 cut(s)	242, 321
BsoBI	CYCGRG	1 cut(s)	226
Bsp1286I	GDGCHC	3 cut(s)	39, 56, 177
Bsp143I	GATC	2 cut(s)	205, 738
Bsp1720I	GCTNAGC	1 cut(s)	50
BspACI	CCGC	2 cut(s)	112, 509
BspANI	GGCC	2 cut(s)	242, 321
BspCNI	CTCAG	1 cut(s)	42
BspLI	GGNNCC	2 cut(s)	38, 805
BspMAI	CTGCAG	1 cut(s)	696
BspPI	GGATC	2 cut(s)	213, 746
BspQI	GCTCTTC	2 cut(s)	476, 751
BspT107I	GGYRCC	1 cut(s)	803
BsrDI	GCAATG	2 cut(s)	322, 342
BsrI	ACTGG	1 cut(s)	612
BssECI	CCNNGG	3 cut(s)	17, 544, 814
BssMI	GATC	2 cut(s)	205, 738
BssT1I	CCWWGG	2 cut(s)	544, 814
Bst2UI	CCWGG	3 cut(s)	558, 636, 675
Bst4CI	ACNGT	2 cut(s)	295, 488
Bst6I	CTCTTC	3 cut(s)	426, 476, 751
BstDEI	CTNAG	4 cut(s)	50, 331, 652, 760
BstDSI	CCRYGG	1 cut(s)	17
BstF5I	GGATG	5 cut(s)	670, 686, 778, 790, 824
BstKTI	GATC	2 cut(s)	208, 741
BstMBI	GATC	2 cut(s)	205, 738
BstMWI	GCNNNNNNNGC	2 cut(s)	120, 640
BstNI	CCWGG	3 cut(s)	558, 636, 675
BstNSI	RCATGY	1 cut(s)	522
BstSCI	CCNGG	3 cut(s)	556, 634, 673
BstSFI	CTRYAG	1 cut(s)	692
BstSLI	GKGCMC	1 cut(s)	177
BstV1I	GCAGC	2 cut(s)	127, 836
BstX2I	RGATCY	2 cut(s)	205, 738
BstXI	CCANNNNNNTGG	1 cut(s)	157
BstYI	RGATCY	2 cut(s)	205, 738
BsuI	GTATCC	1 cut(s)	508
BsuRI	GGCC	2 cut(s)	242, 321
BtgI	CCRYGG	1 cut(s)	17
BtsCI	GGATG	5 cut(s)	670, 686, 778, 790, 824
BtsIMutI	CAGTG	3 cut(s)	579, 596, 605
Cfr13I	GGNCC	1 cut(s)	277
Csp6I	GTAC	1 cut(s)	701
CspCI	CAANNNNNGTGG	2 cut(s)	232, 267
CviAII	CATG	3 cut(s)	30, 323, 519
CviQI	GTAC	1 cut(s)	701
DdeI	CTNAG	4 cut(s)	50, 331, 652, 760
DpnI	GATC	2 cut(s)	207, 740
DpnII	GATC	2 cut(s)	205, 738
EaeI	YGGCCR	1 cut(s)	319
Eam1104I	CTCTTC	3 cut(s)	426, 476, 751
EarI	CTCTTC	3 cut(s)	426, 476, 751
Eco130I	CCWWGG	2 cut(s)	544, 814
Eco24I	GRGCYC	1 cut(s)	39
Eco32I	GATATC	1 cut(s)	625
Eco47I	GGWCC	1 cut(s)	277
Eco88I	CYCGRG	1 cut(s)	226
EcoRII	CCWGG	3 cut(s)	556, 634, 673
EcoRV	GATATC	1 cut(s)	625
EcoT14I	CCWWGG	2 cut(s)	544, 814
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	2 cut(s)	544, 814
FaeI	CATG	3 cut(s)	33, 326, 522
FaiI	YATR	5 cut(s)	31, 324, 381, 520, 663
FatI	CATG	3 cut(s)	29, 322, 518
FblI	GTMKAC	1 cut(s)	765
Fnu4HI	GCNGC	2 cut(s)	141, 825
FokI	GGATG	5 cut(s)	657, 693, 785, 797, 831
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	2 cut(s)	141, 825
FspBI	CTAG	1 cut(s)	545
GluI	GCNGC	2 cut(s)	141, 825
HaeIII	GGCC	2 cut(s)	242, 321
HapII	CCGG	1 cut(s)	105
Hin1II	CATG	3 cut(s)	33, 326, 522
HinfI	GANTC	3 cut(s)	359, 434, 584
HpaII	CCGG	1 cut(s)	105
Hpy166II	GTNNAC	1 cut(s)	766
Hpy188I	TCNGA	1 cut(s)	83
Hpy188III	TCNNGA	4 cut(s)	195, 343, 395, 588
Hpy8I	GTNNAC	1 cut(s)	766
HpyAV	CCTTC	1 cut(s)	232
HpyCH4III	ACNGT	2 cut(s)	295, 488
HpyCH4IV	ACGT	2 cut(s)	77, 271
HpyCH4V	TGCA	4 cut(s)	143, 617, 694, 824
HpyF10VI	GCNNNNNNNGC	2 cut(s)	120, 640
HpyF3I	CTNAG	4 cut(s)	50, 331, 652, 760
HpySE526I	ACGT	2 cut(s)	77, 271
Hsp92II	CATG	3 cut(s)	33, 326, 522
Kzo9I	GATC	2 cut(s)	205, 738
LguI	GCTCTTC	2 cut(s)	476, 751
LmnI	GCTCC	1 cut(s)	42
Lsp1109I	GCAGC	2 cut(s)	127, 836
LweI	GCATC	2 cut(s)	292, 679
MaeI	CTAG	1 cut(s)	545
MaeII	ACGT	2 cut(s)	77, 271
MaeIII	GTNAC	1 cut(s)	482
MalI	GATC	2 cut(s)	207, 740
MboI	GATC	2 cut(s)	205, 738
MboII	GAAGA	8 cut(s)	247, 411, 443, 463, 497, 545, 698, 738
MflI	RGATCY	2 cut(s)	205, 738
MhlI	GDGCHC	3 cut(s)	39, 56, 177
MlsI	TGGCCA	1 cut(s)	321
MluCI	AATT	2 cut(s)	97, 297
MluNI	TGGCCA	1 cut(s)	321
MlyI	GAGTC	1 cut(s)	443
MmeI	TCCRAC	2 cut(s)	98, 174
MnlI	CCTC	7 cut(s)	51, 81, 196, 198, 632, 763, 787
Mox20I	TGGCCA	1 cut(s)	321
MroXI	GAANNNNTTC	2 cut(s)	88, 504
MscI	TGGCCA	1 cut(s)	321
MseI	TTAA	1 cut(s)	465
MslI	CAYNNNNRTG	1 cut(s)	675
Msp20I	TGGCCA	1 cut(s)	321
MspA1I	CMGCKG	2 cut(s)	114, 827
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	3 cut(s)	558, 636, 675
MvaI	CCWGG	3 cut(s)	558, 636, 675
MwoI	GCNNNNNNNGC	2 cut(s)	120, 640
NdeII	GATC	2 cut(s)	205, 738
NlaIII	CATG	3 cut(s)	33, 326, 522
NlaIV	GGNNCC	2 cut(s)	38, 805
NmuCI	GTSAC	1 cut(s)	482
NspI	RCATGY	1 cut(s)	522
PciI	ACATGT	1 cut(s)	518
PciSI	GCTCTTC	2 cut(s)	476, 751
PdmI	GAANNNNTTC	2 cut(s)	88, 504
PfeI	GAWTC	2 cut(s)	359, 584
PkrI	GCNGC	2 cut(s)	142, 826
PleI	GAGTC	1 cut(s)	442
PpsI	GAGTC	1 cut(s)	442
PscI	ACATGT	1 cut(s)	518
Psp1406I	AACGTT	1 cut(s)	77
Psp6I	CCWGG	3 cut(s)	556, 634, 673
PspGI	CCWGG	3 cut(s)	556, 634, 673
PspN4I	GGNNCC	2 cut(s)	38, 805
PspPI	GGNCC	1 cut(s)	277
PstI	CTGCAG	1 cut(s)	696
PsuI	RGATCY	2 cut(s)	205, 738
PvuII	CAGCTG	1 cut(s)	827
RsaI	GTAC	1 cut(s)	702
RsaNI	GTAC	1 cut(s)	701
RseI	CAYNNNNRTG	1 cut(s)	675
SapI	GCTCTTC	2 cut(s)	476, 751
SaqAI	TTAA	1 cut(s)	465
SatI	GCNGC	2 cut(s)	141, 825
Sau3AI	GATC	2 cut(s)	205, 738
Sau96I	GGNCC	1 cut(s)	277
SchI	GAGTC	1 cut(s)	443
ScrFI	CCNGG	3 cut(s)	558, 636, 675
SduI	GDGCHC	3 cut(s)	39, 56, 177
SfaNI	GCATC	2 cut(s)	292, 679
SfcI	CTRYAG	1 cut(s)	692
SinI	GGWCC	1 cut(s)	277
SmiMI	CAYNNNNRTG	1 cut(s)	675
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	2 cut(s)	97, 297
SsiI	CCGC	2 cut(s)	112, 509
SspMI	CTAG	1 cut(s)	545
StyD4I	CCNGG	3 cut(s)	556, 634, 673
StyI	CCWWGG	2 cut(s)	544, 814
TaaI	ACNGT	2 cut(s)	295, 488
TaiI	ACGT	2 cut(s)	80, 274
TaqII	GACCGA	1 cut(s)	427
TasI	AATT	2 cut(s)	97, 297
TfiI	GAWTC	2 cut(s)	359, 584
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TscAI	CASTG	3 cut(s)	586, 603, 612
TseFI	GTSAC	1 cut(s)	482
TseI	GCWGC	2 cut(s)	140, 824
Tsp45I	GTSAC	1 cut(s)	482
TspDTI	ATGAA	2 cut(s)	372, 789
TspGWI	ACGGA	1 cut(s)	715
TspRI	CASTG	3 cut(s)	586, 603, 612
VpaK11BI	GGWCC	1 cut(s)	277
XceI	RCATGY	1 cut(s)	522
XmaJI	CCTAGG	1 cut(s)	544
XmiI	GTMKAC	1 cut(s)	765
XmnI	GAANNNNTTC	2 cut(s)	88, 504
XspI	CTAG	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.