Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008049

Physical Location & Seq

Genomic Coordinates Forward (+)

3837949 .. 3840996

Gene Structure 3048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g03330.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGCTGGCAGTTGCAGTGCCGGTCAGATTGAGATTTGGCGCGCATTTGCTTGGTATACACAAACCCCTGACGGTAATACCAACTTCTTCTTCCTCAACACGCTGCTTCTTCCTCTTTCCCTCTCCTCCTCCTCGAAACGTTTCGCTGAGGCAGACTCCTCGTGACCTCTTCCGCCGAAACGTTTCCCAAACCCCTGCCCCTGCGGCCAGTGATTCCGTTTCCGTTTCTTTCCCGAAAGACTCTCCTCTCTTTGGATTGGAGGATCTACTAGTGAGCTTCATCTTGGGGAAGAAGAGGGCCACAGAAGTTTCCCACTTGGTATGGAAACATGTTGTCCAAAAAGGTGATACGGTCATTGATGCCACTTGTGGCAATGGTCATGATACCTTAGCGATGCTCAAGATGGTCGCTGATGAATCGGGAAAGGGTTCTGTTTATGGACTTGACATTCAAGAAGCTGCTTTGCAGAAAACTTCTTCTCTGCTGGAAGATTCGGTCACTCCAAATGAGAAGGGACTTGTTAAGCTGTTCTCCAAATGCCACAGTAAAATGCATGAAGTTCTACCAAGGAATACATCTGTTAGGCTTGTCGCTTTCAACCTAGGCTATCTTCCATGGGGTGACAAAACACTCACCACGCGGTCAGACACAACATTAAAAGCATTGGAAGCTACAAAAGGTATCCTGATGGACGGAGGGCTTATCAGCTTAGTGGTTTATGTGGGGCATCCTGGTGGATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

rRNA_methylase

Protein Analysis

248

Amino Acids

26.79

Weight (kDa)

9.4

Isoelectric Point (pI)

42.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16445
fragaria_vesca	FvH4_2g12161 FvH4_2g12161 FvH4_2g12161 FvH4_2g12161 FvH4_2g12161
malus_domestica	MD05G1040700.v1.1
prunus_persica	Prupe.8G055300_v2.0.a1 Prupe.8G055300_v2.0.a1 Prupe.8G055300_v2.0.a1 Prupe.8G055300_v2.0.a1 Prupe.8G055300_v2.0.a1
pyrus_communis	pycom05g03330
rosa_chinensis	RchiOBHm_Chr6g0272151
rosa_laevigata	RLG00000013697
rosa_multiflora	Rmu_sc0004606.1_g000002 Rmu_sc0013301.1_g000011
rosa_roxburghii	Rroxscaffold_7G00196550
rosa_rugosa	Rorug06G0066100
rosa_samantha	Rh6AG183300 Rh6BG183800 Rh6CG184600 Rh6DG176300
rosa_wichuraiana	Rw6G015780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	55
AccII	CGCG	2 cut(s)	41, 640
AciI	CCGC	3 cut(s)	172, 203, 640
AclI	AACGTT	2 cut(s)	138, 180
AclWI	GGATC	1 cut(s)	270
AcoI	YGGCCR	1 cut(s)	204
AfiI	CCNNNNNNNGG	1 cut(s)	251
AflIII	ACRYGT	1 cut(s)	328
AgsI	TTSAA	2 cut(s)	452, 598
AhlI	ACTAGT	1 cut(s)	268
AjnI	CCWGG	1 cut(s)	730
AjuI	GAANNNNNNNTTGG	2 cut(s)	73, 105
AluBI	AGCT	5 cut(s)	276, 458, 526, 671, 708
AluI	AGCT	5 cut(s)	276, 458, 526, 671, 708
AlwI	GGATC	1 cut(s)	270
AoxI	GGCC	2 cut(s)	204, 297
ApeKI	GCWGC	2 cut(s)	102, 458
Asp700I	GAANNNNTTC	3 cut(s)	139, 181, 427
AspA2I	CCTAGG	1 cut(s)	601
AspLEI	GCGC	2 cut(s)	41, 43
AspS9I	GGNCC	1 cut(s)	297
AsuHPI	GGTGA	3 cut(s)	356, 625, 632
AvrII	CCTAGG	1 cut(s)	601
BauI	CACGAG	1 cut(s)	159
BbvCI	CCTCAGC	1 cut(s)	146
BbvI	GCAGC	2 cut(s)	89, 445
BccI	CCATC	3 cut(s)	397, 682, 732
BcgI	CGANNNNNNTGC	2 cut(s)	140, 174
BciT130I	CCWGG	1 cut(s)	732
BciVI	GTATCC	1 cut(s)	692
BcuI	ACTAGT	1 cut(s)	268
BfaI	CTAG	2 cut(s)	269, 602
BfuI	GTATCC	1 cut(s)	692
BglI	GCCNNNNNGGC	1 cut(s)	203
BisI	GCNGC	3 cut(s)	103, 204, 459
BlnI	CCTAGG	1 cut(s)	601
BlsI	GCNGC	3 cut(s)	104, 205, 460
Bme1390I	CCNGG	1 cut(s)	732
BmgT120I	GGNCC	1 cut(s)	297
BmrFI	CCNGG	1 cut(s)	732
BmsI	GCATC	3 cut(s)	349, 384, 736
BplI	GAGNNNNNCTC	2 cut(s)	139, 171
Bpu10I	CCTNAGC	2 cut(s)	146, 388
BpuEI	CTTGAG	1 cut(s)	383
BsaJI	CCNNGG	3 cut(s)	566, 601, 614
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse118I	RCCGGY	1 cut(s)	19
Bse1I	ACTGG	1 cut(s)	207
Bse3DI	GCAATG	1 cut(s)	379
BseBI	CCWGG	1 cut(s)	732
BseDI	CCNNGG	3 cut(s)	566, 601, 614
BseGI	GGATG	2 cut(s)	727, 743
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMI	GCAATG	1 cut(s)	379
BseMII	CTCAG	1 cut(s)	137
BseNI	ACTGG	1 cut(s)	207
BsePI	GCGCGC	1 cut(s)	39
BseRI	GAGGAG	5 cut(s)	114, 117, 120, 147, 234
BseXI	GCAGC	2 cut(s)	89, 445
Bsh1236I	CGCG	2 cut(s)	41, 640
BshFI	GGCC	2 cut(s)	206, 299
BsiSI	CCGG	1 cut(s)	20
BslFI	GGGAC	1 cut(s)	528
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	528
BsnI	GGCC	2 cut(s)	206, 299
Bsp143I	GATC	1 cut(s)	262
Bsp19I	CCATGG	1 cut(s)	614
BspACI	CCGC	3 cut(s)	172, 203, 640
BspANI	GGCC	2 cut(s)	206, 299
BspCNI	CTCAG	1 cut(s)	138
BspFNI	CGCG	2 cut(s)	41, 640
BspHI	TCATGA	1 cut(s)	379
BspPI	GGATC	1 cut(s)	270
BsrDI	GCAATG	1 cut(s)	379
BsrFI	RCCGGY	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	207
BssAI	RCCGGY	1 cut(s)	19
BssECI	CCNNGG	3 cut(s)	566, 601, 614
BssHII	GCGCGC	1 cut(s)	39
BssMI	GATC	1 cut(s)	262
BssNAI	GTATAC	1 cut(s)	56
BssSI	CACGAG	1 cut(s)	159
BssT1I	CCWWGG	3 cut(s)	566, 601, 614
Bst1107I	GTATAC	1 cut(s)	56
Bst2BI	CACGAG	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	732
Bst4CI	ACNGT	3 cut(s)	73, 352, 545
Bst6I	CTCTTC	2 cut(s)	173, 287
BstC8I	GCNNGC	2 cut(s)	6, 41
BstDEI	CTNAG	3 cut(s)	146, 388, 709
BstDSI	CCRYGG	1 cut(s)	614
BstF5I	GGATG	2 cut(s)	727, 743
BstFNI	CGCG	2 cut(s)	41, 640
BstHHI	GCGC	2 cut(s)	41, 43
BstKTI	GATC	1 cut(s)	265
BstMBI	GATC	1 cut(s)	262
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 668
BstNI	CCWGG	1 cut(s)	732
BstNSI	RCATGY	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	730
BstUI	CGCG	2 cut(s)	41, 640
BstV1I	GCAGC	2 cut(s)	89, 445
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
BstZ17I	GTATAC	1 cut(s)	56
BsuI	GTATCC	1 cut(s)	692
BsuRI	GGCC	2 cut(s)	206, 299
BtgI	CCRYGG	1 cut(s)	614
BtgZI	GCGATG	1 cut(s)	407
BtsCI	GGATG	2 cut(s)	727, 743
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	2 cut(s)	21, 214
Cac8I	GCNNGC	2 cut(s)	6, 41
CciI	TCATGA	1 cut(s)	379
CfoI	GCGC	2 cut(s)	41, 43
Cfr10I	RCCGGY	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	297
CviAII	CATG	4 cut(s)	329, 380, 554, 615
DdeI	CTNAG	3 cut(s)	146, 388, 709
DpnI	GATC	1 cut(s)	264
DpnII	GATC	1 cut(s)	262
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	2 cut(s)	173, 287
EarI	CTCTTC	2 cut(s)	173, 287
EciI	GGCGGA	1 cut(s)	161
Eco130I	CCWWGG	3 cut(s)	566, 601, 614
EcoRII	CCWGG	1 cut(s)	730
EcoT14I	CCWWGG	3 cut(s)	566, 601, 614
EcoT22I	ATGCAT	1 cut(s)	555
ErhI	CCWWGG	3 cut(s)	566, 601, 614
FaeI	CATG	4 cut(s)	332, 383, 557, 618
FaiI	YATR	8 cut(s)	56, 322, 330, 381, 438, 555, 616, 720
FaqI	GGGAC	1 cut(s)	528
FatI	CATG	4 cut(s)	328, 379, 553, 614
FblI	GTMKAC	1 cut(s)	55
Fnu4HI	GCNGC	3 cut(s)	103, 204, 459
FokI	GGATG	1 cut(s)	714
Fsp4HI	GCNGC	3 cut(s)	103, 204, 459
FspBI	CTAG	2 cut(s)	269, 602
GlaI	GCGC	2 cut(s)	40, 42
GluI	GCNGC	3 cut(s)	103, 204, 459
HaeIII	GGCC	2 cut(s)	206, 299
HapII	CCGG	1 cut(s)	20
HhaI	GCGC	2 cut(s)	41, 43
Hin1II	CATG	4 cut(s)	332, 383, 557, 618
Hin6I	GCGC	2 cut(s)	39, 41
HinP1I	GCGC	2 cut(s)	39, 41
HinfI	GANTC	5 cut(s)	154, 212, 239, 416, 491
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	3 cut(s)	356, 625, 632
Hpy166II	GTNNAC	1 cut(s)	56
Hpy188I	TCNGA	2 cut(s)	26, 646
Hpy188III	TCNNGA	7 cut(s)	161, 232, 380, 400, 420, 452, 685
Hpy8I	GTNNAC	1 cut(s)	56
HpyAV	CCTTC	1 cut(s)	505
HpyCH4III	ACNGT	3 cut(s)	73, 352, 545
HpyCH4IV	ACGT	2 cut(s)	138, 180
HpyCH4V	TGCA	3 cut(s)	14, 466, 553
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 668
HpyF3I	CTNAG	3 cut(s)	146, 388, 709
HpySE526I	ACGT	2 cut(s)	138, 180
Hsp92II	CATG	4 cut(s)	332, 383, 557, 618
HspAI	GCGC	2 cut(s)	39, 41
Kzo9I	GATC	1 cut(s)	262
LpnPI	CCDG	8 cut(s)	33, 80, 207, 213, 220, 470, 698, 717
Lsp1109I	GCAGC	2 cut(s)	89, 445
LweI	GCATC	3 cut(s)	349, 384, 736
MaeI	CTAG	2 cut(s)	269, 602
MaeII	ACGT	2 cut(s)	138, 180
MaeIII	GTNAC	3 cut(s)	161, 496, 620
MalI	GATC	1 cut(s)	264
MboI	GATC	1 cut(s)	262
MboII	GAAGA	9 cut(s)	78, 81, 100, 160, 301, 304, 468, 500, 602
MflI	RGATCY	1 cut(s)	262
MlyI	GAGTC	2 cut(s)	148, 233
Mph1103I	ATGCAT	1 cut(s)	555
MroXI	GAANNNNTTC	3 cut(s)	139, 181, 427
MseI	TTAA	2 cut(s)	522, 656
MslI	CAYNNNNRTG	1 cut(s)	732
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	732
MvaI	CCWGG	1 cut(s)	732
MvnI	CGCG	2 cut(s)	41, 640
MwoI	GCNNNNNNNGC	2 cut(s)	203, 668
NcoI	CCATGG	1 cut(s)	614
NdeII	GATC	1 cut(s)	262
NlaIII	CATG	4 cut(s)	332, 383, 557, 618
NmuCI	GTSAC	3 cut(s)	161, 496, 620
NsiI	ATGCAT	1 cut(s)	555
NspI	RCATGY	1 cut(s)	332
PagI	TCATGA	1 cut(s)	379
PauI	GCGCGC	1 cut(s)	39
PciI	ACATGT	1 cut(s)	328
PdmI	GAANNNNTTC	3 cut(s)	139, 181, 427
PfeI	GAWTC	3 cut(s)	212, 416, 491
PkrI	GCNGC	3 cut(s)	104, 205, 460
PleI	GAGTC	2 cut(s)	148, 233
PpsI	GAGTC	2 cut(s)	148, 233
PscI	ACATGT	1 cut(s)	328
Psp1406I	AACGTT	2 cut(s)	138, 180
Psp6I	CCWGG	1 cut(s)	730
PspGI	CCWGG	1 cut(s)	730
PspPI	GGNCC	1 cut(s)	297
PsuI	RGATCY	1 cut(s)	262
PteI	GCGCGC	1 cut(s)	39
RseI	CAYNNNNRTG	1 cut(s)	732
SaqAI	TTAA	2 cut(s)	522, 656
SatI	GCNGC	3 cut(s)	103, 204, 459
Sau3AI	GATC	1 cut(s)	262
Sau96I	GGNCC	1 cut(s)	297
SchI	GAGTC	2 cut(s)	148, 233
ScrFI	CCNGG	1 cut(s)	732
SfaNI	GCATC	3 cut(s)	349, 384, 736
SmiMI	CAYNNNNRTG	1 cut(s)	732
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
SpeI	ACTAGT	1 cut(s)	268
SsiI	CCGC	3 cut(s)	172, 203, 640
SspMI	CTAG	2 cut(s)	269, 602
StyD4I	CCNGG	1 cut(s)	730
StyI	CCWWGG	3 cut(s)	566, 601, 614
TaaI	ACNGT	3 cut(s)	73, 352, 545
TaiI	ACGT	2 cut(s)	141, 183
TaqI	TCGA	1 cut(s)	133
TaqII	GACCGA	1 cut(s)	484
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	3 cut(s)	212, 416, 491
Tru1I	TTAA	2 cut(s)	522, 656
Tru9I	TTAA	2 cut(s)	522, 656
TscAI	CASTG	2 cut(s)	21, 214
TseFI	GTSAC	3 cut(s)	161, 496, 620
TseI	GCWGC	2 cut(s)	102, 458
Tsp45I	GTSAC	3 cut(s)	161, 496, 620
TspDTI	ATGAA	3 cut(s)	268, 429, 570
TspGWI	ACGGA	3 cut(s)	205, 211, 708
TspRI	CASTG	2 cut(s)	21, 214
XceI	RCATGY	1 cut(s)	332
XmaJI	CCTAGG	1 cut(s)	601
XmiI	GTMKAC	1 cut(s)	55
XmnI	GAANNNNTTC	3 cut(s)	139, 181, 427
XspI	CTAG	2 cut(s)	269, 602
Zsp2I	ATGCAT	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.