Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0008049

Physical Location & Seq

Genomic Coordinates Reverse (-)

29748511 .. 29753785

Gene Structure 5275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG184600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGTTGGCAGTTGTGCCCCGGAGGTTATCATGGGGGCTCCCTCATTTGCTGAGCACACAGAAGCAGAAACCTCCAACGTTCCGAAACTTTTCGGGTAATTCTGCCGGAAACCGCTGGTTGGGCAAGTTTGAACTGAACGCTGCAACTTCCAACGACTTGGTTTCGGTTTCTGTGCCCAAACACTCTCCTCTCTCTGGATTGGAGGATCTACTTTTGAGCTTTATCTCGGGCAAGAAGAAGGCCACAGAAGTTGCTCACTCGGTTTGGAAACGTGTGGTCCAAAAAGGAGATACGGTAATTGACGCCACTTGTGGCAATGGCCATGATACCTTAGCAATGCTCAAGATGGTAGCTGATGAATCAGGTAAGGGTTCAGTTTATGGAATGGATATTCAGGAAGTTGCTTTACAGAAAACTTCTTCTTTGCTGGAAGAGTCGGTCAGTCCAAAAGAGAAAGAACTTGTTAAGCTCTTCTCCAATTGTCACAGTAAAATGCGTGAAGTTCTTCCACAGGATACATGTGTTAGGCTTGTTGCTTTCAACCTAGGCTATCTTCCTGGTGGCGACAAAACAATAATCACTGAATCAGGAACAACACTGAAAGCACTGGAAGTTGCAAAAGATATCCTGCTGCCAGGAGGGCTTATCAGCTTAGTGGTTTATGTGGGGCATCCTGGTGGATGGGAAGAACTGCAGATGGTACAACACTTTGTTTCTAAACTATCTGTTGAGAAATGGATCTGCTGTGAGTATCAGTCATCAAATCGATCATGGTCTCCAATACTTGTTTGCTTATTCAAAAGATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

rRNA_methylase

Protein Analysis

269

Amino Acids

29.54

Weight (kDa)

8.77

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_31	PF13847	95 - 141	1.7e-06	Methyltransferase domain
rRNA_methylase	PF06962	126 - 266	5.1e-42	Putative rRNA methylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16445
fragaria_vesca	FvH4_2g12161 FvH4_2g12161 FvH4_2g12161 FvH4_2g12161 FvH4_2g12161
malus_domestica	MD05G1040700.v1.1
prunus_persica	Prupe.8G055300_v2.0.a1 Prupe.8G055300_v2.0.a1 Prupe.8G055300_v2.0.a1 Prupe.8G055300_v2.0.a1 Prupe.8G055300_v2.0.a1
pyrus_communis	pycom05g03330
rosa_chinensis	RchiOBHm_Chr6g0272151
rosa_laevigata	RLG00000013697
rosa_multiflora	Rmu_sc0004606.1_g000002 Rmu_sc0013301.1_g000011
rosa_roxburghii	Rroxscaffold_7G00196550
rosa_rugosa	Rorug06G0066100
rosa_samantha	Rh6AG183300 Rh6BG183800 Rh6CG184600 Rh6DG176300
rosa_wichuraiana	Rw6G015780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	112
AclI	AACGTT	1 cut(s)	77
AclWI	GGATC	2 cut(s)	213, 746
AcoI	YGGCCR	1 cut(s)	319
AcyI	GRCGYC	1 cut(s)	303
AfaI	GTAC	1 cut(s)	702
AfiI	CCNNNNNNNGG	2 cut(s)	118, 194
AflIII	ACRYGT	2 cut(s)	271, 518
AgsI	TTSAA	3 cut(s)	131, 541, 799
AjnI	CCWGG	3 cut(s)	556, 634, 673
AluBI	AGCT	4 cut(s)	219, 353, 469, 651
AluI	AGCT	4 cut(s)	219, 353, 469, 651
Alw21I	GWGCWC	1 cut(s)	56
Alw26I	GTCTC	1 cut(s)	780
AlwI	GGATC	2 cut(s)	213, 746
Ama87I	CYCGRG	1 cut(s)	226
AoxI	GGCC	2 cut(s)	240, 319
ApeKI	GCWGC	2 cut(s)	140, 631
Asp700I	GAANNNNTTC	2 cut(s)	88, 504
AspA2I	CCTAGG	1 cut(s)	544
AspS9I	GGNCC	1 cut(s)	277
AsuC2I	CCSGG	1 cut(s)	19
AvaI	CYCGRG	1 cut(s)	226
AvaII	GGWCC	1 cut(s)	277
AvrII	CCTAGG	1 cut(s)	544
BaeGI	GKGCMC	2 cut(s)	18, 177
BaeI	ACNNNNGTAYC	2 cut(s)	507, 540
BalI	TGGCCA	1 cut(s)	321
BanII	GRGCYC	1 cut(s)	39
BarI	GAAGNNNNNNTAC	2 cut(s)	390, 422
Bbv12I	GWGCWC	1 cut(s)	56
BbvI	GCAGC	2 cut(s)	127, 618
BccI	CCATC	3 cut(s)	340, 675, 691
BciT130I	CCWGG	3 cut(s)	558, 636, 675
BciVI	GTATCC	1 cut(s)	508
BcnI	CCSGG	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	780
BfaI	CTAG	1 cut(s)	545
BfmI	CTRYAG	1 cut(s)	692
BfuI	GTATCC	1 cut(s)	508
BglI	GCCNNNNNGGC	1 cut(s)	640
BisI	GCNGC	2 cut(s)	141, 632
BlnI	CCTAGG	1 cut(s)	544
BlpI	GCTNAGC	1 cut(s)	50
BlsI	GCNGC	2 cut(s)	142, 633
Bme1390I	CCNGG	4 cut(s)	19, 558, 636, 675
Bme18I	GGWCC	1 cut(s)	277
BmeT110I	CYCGRG	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	38
BmrFI	CCNGG	4 cut(s)	19, 558, 636, 675
BmsI	GCATC	2 cut(s)	679, 794
Bpu10I	CCTNAGC	1 cut(s)	331
Bpu1102I	GCTNAGC	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	326
BpuMI	CCSGG	1 cut(s)	19
Bsa29I	ATCGAT	1 cut(s)	766
BsaHI	GRCGYC	1 cut(s)	303
BsaI	GGTCTC	1 cut(s)	780
BsaJI	CCNNGG	2 cut(s)	17, 544
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 194
Bse1I	ACTGG	1 cut(s)	612
Bse3DI	GCAATG	2 cut(s)	322, 342
BseBI	CCWGG	3 cut(s)	558, 636, 675
BseCI	ATCGAT	1 cut(s)	766
BseDI	CCNNGG	2 cut(s)	17, 544
BseGI	GGATG	2 cut(s)	670, 686
BseLI	CCNNNNNNNGG	2 cut(s)	118, 194
BseMI	GCAATG	2 cut(s)	322, 342
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	612
BseRI	GAGGAG	1 cut(s)	177
BseSI	GKGCMC	2 cut(s)	18, 177
BseXI	GCAGC	2 cut(s)	127, 618
BshFI	GGCC	2 cut(s)	242, 321
BshVI	ATCGAT	1 cut(s)	766
BsiHKAI	GWGCWC	1 cut(s)	56
BsiHKCI	CYCGRG	1 cut(s)	226
BsiSI	CCGG	2 cut(s)	19, 105
BslI	CCNNNNNNNGG	2 cut(s)	118, 194
BsmAI	GTCTC	1 cut(s)	780
BsnI	GGCC	2 cut(s)	242, 321
Bso31I	GGTCTC	1 cut(s)	780
BsoBI	CYCGRG	1 cut(s)	226
Bsp1286I	GDGCHC	4 cut(s)	18, 39, 56, 177
Bsp143I	GATC	3 cut(s)	205, 738, 767
Bsp1720I	GCTNAGC	1 cut(s)	50
BspACI	CCGC	1 cut(s)	112
BspANI	GGCC	2 cut(s)	242, 321
BspCNI	CTCAG	1 cut(s)	42
BspDI	ATCGAT	1 cut(s)	766
BspLI	GGNNCC	1 cut(s)	38
BspMAI	CTGCAG	1 cut(s)	696
BspPI	GGATC	2 cut(s)	213, 746
BspQI	GCTCTTC	1 cut(s)	476
BspTNI	GGTCTC	1 cut(s)	780
BsrDI	GCAATG	2 cut(s)	322, 342
BsrI	ACTGG	1 cut(s)	612
BssECI	CCNNGG	2 cut(s)	17, 544
BssMI	GATC	3 cut(s)	205, 738, 767
BssNI	GRCGYC	1 cut(s)	303
BssT1I	CCWWGG	1 cut(s)	544
Bst2UI	CCWGG	3 cut(s)	558, 636, 675
Bst4CI	ACNGT	2 cut(s)	295, 488
Bst6I	CTCTTC	2 cut(s)	426, 476
BstACI	GRCGYC	1 cut(s)	303
BstDEI	CTNAG	3 cut(s)	50, 331, 652
BstF5I	GGATG	2 cut(s)	670, 686
BstKTI	GATC	3 cut(s)	208, 741, 770
BstMAI	GTCTC	1 cut(s)	780
BstMBI	GATC	3 cut(s)	205, 738, 767
BstMWI	GCNNNNNNNGC	2 cut(s)	120, 640
BstNI	CCWGG	3 cut(s)	558, 636, 675
BstNSI	RCATGY	1 cut(s)	522
BstSCI	CCNGG	4 cut(s)	17, 556, 634, 673
BstSFI	CTRYAG	1 cut(s)	692
BstSLI	GKGCMC	2 cut(s)	18, 177
BstV1I	GCAGC	2 cut(s)	127, 618
BstX2I	RGATCY	2 cut(s)	205, 738
BstXI	CCANNNNNNTGG	1 cut(s)	157
BstYI	RGATCY	2 cut(s)	205, 738
Bsu15I	ATCGAT	1 cut(s)	766
BsuI	GTATCC	1 cut(s)	508
BsuRI	GGCC	2 cut(s)	242, 321
BsuTUI	ATCGAT	1 cut(s)	766
BtsCI	GGATG	2 cut(s)	670, 686
BtsIMutI	CAGTG	3 cut(s)	579, 596, 605
Cfr13I	GGNCC	1 cut(s)	277
ClaI	ATCGAT	1 cut(s)	766
CseI	GACGC	1 cut(s)	311
Csp6I	GTAC	1 cut(s)	701
CspCI	CAANNNNNGTGG	2 cut(s)	232, 267
CviAII	CATG	4 cut(s)	30, 323, 519, 771
CviQI	GTAC	1 cut(s)	701
DdeI	CTNAG	3 cut(s)	50, 331, 652
DpnI	GATC	3 cut(s)	207, 740, 769
DpnII	GATC	3 cut(s)	205, 738, 767
EaeI	YGGCCR	1 cut(s)	319
Eam1104I	CTCTTC	2 cut(s)	426, 476
EarI	CTCTTC	2 cut(s)	426, 476
Eco130I	CCWWGG	1 cut(s)	544
Eco24I	GRGCYC	1 cut(s)	39
Eco31I	GGTCTC	1 cut(s)	780
Eco32I	GATATC	1 cut(s)	625
Eco47I	GGWCC	1 cut(s)	277
Eco88I	CYCGRG	1 cut(s)	226
EcoRII	CCWGG	3 cut(s)	556, 634, 673
EcoRV	GATATC	1 cut(s)	625
EcoT14I	CCWWGG	1 cut(s)	544
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	544
FaeI	CATG	4 cut(s)	33, 326, 522, 774
FaiI	YATR	6 cut(s)	31, 324, 381, 520, 663, 772
FatI	CATG	4 cut(s)	29, 322, 518, 770
Fnu4HI	GCNGC	2 cut(s)	141, 632
FokI	GGATG	2 cut(s)	657, 693
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	2 cut(s)	141, 632
FspBI	CTAG	1 cut(s)	545
GluI	GCNGC	2 cut(s)	141, 632
HaeIII	GGCC	2 cut(s)	242, 321
HapII	CCGG	2 cut(s)	19, 105
HgaI	GACGC	1 cut(s)	311
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	4 cut(s)	33, 326, 522, 774
HinfI	GANTC	3 cut(s)	359, 434, 584
HpaII	CCGG	2 cut(s)	19, 105
Hpy188I	TCNGA	1 cut(s)	83
Hpy188III	TCNNGA	4 cut(s)	195, 343, 395, 588
HpyAV	CCTTC	1 cut(s)	232
HpyCH4III	ACNGT	2 cut(s)	295, 488
HpyCH4IV	ACGT	2 cut(s)	77, 271
HpyCH4V	TGCA	3 cut(s)	143, 617, 694
HpyF10VI	GCNNNNNNNGC	2 cut(s)	120, 640
HpyF3I	CTNAG	3 cut(s)	50, 331, 652
HpySE526I	ACGT	2 cut(s)	77, 271
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	4 cut(s)	33, 326, 522, 774
Kzo9I	GATC	3 cut(s)	205, 738, 767
LguI	GCTCTTC	1 cut(s)	476
LmnI	GCTCC	1 cut(s)	42
Lsp1109I	GCAGC	2 cut(s)	127, 618
LweI	GCATC	2 cut(s)	679, 794
MaeI	CTAG	1 cut(s)	545
MaeII	ACGT	2 cut(s)	77, 271
MaeIII	GTNAC	1 cut(s)	482
MalI	GATC	3 cut(s)	207, 740, 769
MboI	GATC	3 cut(s)	205, 738, 767
MboII	GAAGA	7 cut(s)	247, 411, 443, 463, 497, 545, 698
MfeI	CAATTG	1 cut(s)	478
MflI	RGATCY	2 cut(s)	205, 738
MhlI	GDGCHC	4 cut(s)	18, 39, 56, 177
MlsI	TGGCCA	1 cut(s)	321
MluCI	AATT	3 cut(s)	97, 297, 478
MluNI	TGGCCA	1 cut(s)	321
MlyI	GAGTC	1 cut(s)	443
MmeI	TCCRAC	2 cut(s)	98, 174
MnlI	CCTC	6 cut(s)	15, 51, 81, 196, 198, 632
Mox20I	TGGCCA	1 cut(s)	321
MroXI	GAANNNNTTC	2 cut(s)	88, 504
MscI	TGGCCA	1 cut(s)	321
MseI	TTAA	1 cut(s)	465
MslI	CAYNNNNRTG	1 cut(s)	675
Msp20I	TGGCCA	1 cut(s)	321
MspA1I	CMGCKG	1 cut(s)	114
MspI	CCGG	2 cut(s)	19, 105
MspR9I	CCNGG	4 cut(s)	19, 558, 636, 675
MunI	CAATTG	1 cut(s)	478
MvaI	CCWGG	3 cut(s)	558, 636, 675
MwoI	GCNNNNNNNGC	2 cut(s)	120, 640
NciI	CCSGG	1 cut(s)	19
NdeII	GATC	3 cut(s)	205, 738, 767
NlaIII	CATG	4 cut(s)	33, 326, 522, 774
NlaIV	GGNNCC	1 cut(s)	38
NmuCI	GTSAC	1 cut(s)	482
NspI	RCATGY	1 cut(s)	522
PciI	ACATGT	1 cut(s)	518
PciSI	GCTCTTC	1 cut(s)	476
PdmI	GAANNNNTTC	2 cut(s)	88, 504
PfeI	GAWTC	2 cut(s)	359, 584
PkrI	GCNGC	2 cut(s)	142, 633
PleI	GAGTC	1 cut(s)	442
PpsI	GAGTC	1 cut(s)	442
PscI	ACATGT	1 cut(s)	518
Psp1406I	AACGTT	1 cut(s)	77
Psp6I	CCWGG	3 cut(s)	556, 634, 673
PspGI	CCWGG	3 cut(s)	556, 634, 673
PspN4I	GGNNCC	1 cut(s)	38
PspPI	GGNCC	1 cut(s)	277
PstI	CTGCAG	1 cut(s)	696
PsuI	RGATCY	2 cut(s)	205, 738
RsaI	GTAC	1 cut(s)	702
RsaNI	GTAC	1 cut(s)	701
RseI	CAYNNNNRTG	1 cut(s)	675
SapI	GCTCTTC	1 cut(s)	476
SaqAI	TTAA	1 cut(s)	465
SatI	GCNGC	2 cut(s)	141, 632
Sau3AI	GATC	3 cut(s)	205, 738, 767
Sau96I	GGNCC	1 cut(s)	277
SchI	GAGTC	1 cut(s)	443
ScrFI	CCNGG	4 cut(s)	19, 558, 636, 675
SduI	GDGCHC	4 cut(s)	18, 39, 56, 177
SfaNI	GCATC	2 cut(s)	679, 794
SfcI	CTRYAG	1 cut(s)	692
SinI	GGWCC	1 cut(s)	277
SmiMI	CAYNNNNRTG	1 cut(s)	675
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	3 cut(s)	97, 297, 478
SsiI	CCGC	1 cut(s)	112
SspMI	CTAG	1 cut(s)	545
StyD4I	CCNGG	4 cut(s)	17, 556, 634, 673
StyI	CCWWGG	1 cut(s)	544
TaaI	ACNGT	2 cut(s)	295, 488
TaiI	ACGT	2 cut(s)	80, 274
TaqI	TCGA	1 cut(s)	766
TaqII	GACCGA	1 cut(s)	427
TasI	AATT	3 cut(s)	97, 297, 478
TfiI	GAWTC	2 cut(s)	359, 584
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TscAI	CASTG	3 cut(s)	586, 603, 612
TseFI	GTSAC	1 cut(s)	482
TseI	GCWGC	2 cut(s)	140, 631
Tsp45I	GTSAC	1 cut(s)	482
TspDTI	ATGAA	1 cut(s)	372
TspRI	CASTG	3 cut(s)	586, 603, 612
VpaK11BI	GGWCC	1 cut(s)	277
XceI	RCATGY	1 cut(s)	522
XmaJI	CCTAGG	1 cut(s)	544
XmnI	GAANNNNTTC	2 cut(s)	88, 504
XspI	CTAG	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.