FvH4_2g12790

Programmed cell death protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0011088
Physical Location & Seq
Forward (+)
11234328 .. 11238401
4074 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g12790.t1

Sequence Viewer

Length: 2190 bp
ATGAGCGGAATGGAGTTCAGTGATGGTTTTGTCTCAACTGAGCATCGGGAGCTCCATCATTCTGCTGCAGAAAGTGCAGATCCATTATCTGTTTCTCCACTGCACATTGGTCCCAAGTCTCCAAGGTCCCCAAAGTCTCCCAAATCGTCAAAGTCCCCAAACTCTCCAAGGTCCCCAAAGATGCAGGGAAAAACTGGAAAAGCAAGTCCACTTGCGCATGATAGGCAATCACATTCTTCTGTACATGGGCGTCCTAAAAAGGGTGGTTCTGGGGGGAAAGGCACCTGGGGTGGCTTACTTGATACTGAAAACACTTGCACTGTTGATCCGAGTAACCCAAACTTTGATAGCAGTGAGGAATGTGAACAATCAAATGCAAAAACTGAGAGAGTGGATTTTGAGGAATACAAAAAGAAAGCAACAATTATAGTGGAAGAATTCTTCGCTACCGATGACATTACCTCCACTGCAAATGAACTAAGAGAACTTGATATGCCTAGCTATAGCTTCTATTTTGTAAAGAAGCTTGTTTCTAAGGCTATGGATAGGCATGATAAGGAGAAAGAAATGGCTGCTGTTCTTTTATCTGCATTATATGCAGACTACATTGATCCCCCACAAGTTTACAAAGGGTTCTGTAAATTGGTAGAATCTGCAGATGACTTGATTGTGGATATACCTGATACAGTTGATGTTCTTGCATTGTTCATTGCCCGAGCTGTTGTTGATGACATACTTCCTCCTGCATTTTTGAAAAAACAAATGAATGATTTAACTAAGGATTCAAAAGGTGTTGAAGTTTTGAAGAGAGCTGAGAAGGGCTACTTAGCAGCCCCTCTCCATGCTGAGATCATTGAGCGGCGGTGGGGAGGTAGCAAGAAGAGAACTGTTGACGATGTCAAGGCTAAGATAAATAATCTGTTGATAGAGTATGTAGTCAGTGGTGACAAGAAAGAGGCTTGCAGATGCATCAAGGAGTTGAAAGTTCCTTTTTTCCACCATGAAATAGTTAAACGAGCTCTTGTAATGGCAATGGAGAGGCGTCAAGCTGAAGGCCGGCTACTAGATTTGCTGAAAGAAGCAGCTGAAGAAGGTTTAATCAACTCAAGCCAAGTATCAAAAGGCTTTGGTAGGATGATTGACTATGTTGATGATTTGTCACTTGACATACCAAACGCCCGGGGAATTTTACAGTCATTGATCTCTAAGGCAGCATCGGAGGGCTGGGTGTGTGCTTCTTCCTTAAAGTCACTCTCATTGGAACCAGAAAAGCCATCATTAGAAGATAGTGTCGCCAGAGCTTTTAAGATGAAAGCTCAATCTATTATTCAAGAGTACTTCTTGTCTGGGGATATCTCAGAGGTATGCAGTTGTCTGGAGTCAGAGAACATGACTTGCTCATCCGAACTGAATGCAATCTTCGTTAAAAGAATGATAACTCTAGCAATGGATCGGAAGAACAGAGAGAAGGAAATGGCATCTGTCTTACTGTCTTCTTTATGTTTTCCAGCTGATGATGTTGTAAATGGTTTTGTAATGTTGATAGAATCCGCAGATGACACAGCTCTGGATAATCCGGTTGTTGTTGAAGACCTTGCAATGTTTCTGGCTAGATCAGTGGTGGATGAAGTTCTAGCCCCACAACACTTGGAAGAGATTGGAAGTCAGTGTGTTGCACCTGATTCAATTGGGAGCAAAGTTCTTAAAATGTCAAAGTCATTGCTAAAGGCCCGGCTATCTGGGGAGCGAATACTAAGGTGTTGGGGTGGAGGGGGAAGCAGTAGACCTGGATGGGCAGTTGAGGATGTTAAGGACAAGATTGGGAAGTTGCTAGAAGAGTTCGAGTCAGGAGGTGGCGTTAGGGAGGCCTGTCGATGCATGAAGGAGTTAGGCATGCCATTTTTCAACCATGAGGTTGTCAAAAAAGCTTTGGTAACCATCATGGAAAAGAAGAAAGAAAGACTTTGGATTCTGCTCGAGGAATGTTTTGGCTCTGGACTCATAACAATGAACCAAATGACAAAGGGGTTCGGAAGAGTTGCAGAATCTCTAGATGATTTGGCTTTGGATGTTCCTGATGCCCAGAAACAATTCGCCCATTACGTCGAACGAGCAAAGACTGCAGGGTGGTTGGATTCTTCATTTTGTTTCAACAAATTAGGACATGTTACAGAAAATGGGACCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05205 ko05206 map05205 map05206
Pfam Domains
Protein Families
MA3

Protein Analysis

730

Amino Acids

80.46

Weight (kDa)

5.71

Isoelectric Point (pI)

49.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MA3 PF02847 137 - 247 5.5e-22 MA3 domain
MA3 PF02847 301 - 409 3.3e-28 MA3 domain
MA3 PF02847 435 - 545 1.1e-18 MA3 domain
MA3 PF02847 603 - 712 4.5e-29 MA3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22730
fragaria_vesca FvH4_2g12790
malus_domestica MD05G1036500.v1.1 MD10G1038400.v1.1
prunus_persica Prupe.8G044800_v2.0.a1
pyrus_communis pycom05g02690 pycom10g02640 pycom10g02760
rosa_chinensis RchiOBHm_Chr6g0273671
rosa_laevigata RLG00000013603
rosa_multiflora Rmu_sc0002231.1_g000021
rosa_roxburghii Rroxscaffold_7G00195170
rosa_rugosa Rorug06G0076800 Rorug06G0076900 Rorug06G0077000
rosa_samantha Rh6AG191400 Rh6BG195400 Rh6CG194900 Rh6DG186800
rosa_wichuraiana Rw6G016750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 216
AccB1I GGYRCC 1 cut(s) 281
AccBSI CCGCTC 2 cut(s) 6, 859
AccI GTMKAC 1 cut(s) 1783
AciI CCGC 4 cut(s) 6, 859, 862, 1551
AclWI GGATC 4 cut(s) 74, 320, 605, 1458
AcsI RAATTY 2 cut(s) 437, 1185
AcuI CTGAAG 2 cut(s) 1071, 1107
AcyI GRCGYC 2 cut(s) 250, 1042
AfaI GTAC 2 cut(s) 243, 1337
AfiI CCNNNNNNNGG 1 cut(s) 260
AflIII ACRYGT 1 cut(s) 2164
AjnI CCWGG 2 cut(s) 284, 1786
Alw21I GWGCWC 2 cut(s) 54, 1021
Alw26I GTCTC 3 cut(s) 37, 123, 141
AlwI GGATC 4 cut(s) 74, 320, 605, 1458
Ama87I CYCGRG 3 cut(s) 714, 1179, 1976
AoxI GGCC 3 cut(s) 1054, 1728, 1866
ApeKI GCWGC 5 cut(s) 65, 572, 830, 1082, 1211
ApoI RAATTY 2 cut(s) 437, 1185
Asp700I GAANNNNTTC 1 cut(s) 2090
AspLEI GCGC 1 cut(s) 217
AspS9I GGNCC 5 cut(s) 110, 126, 171, 1729, 2181
AsuC2I CCSGG 3 cut(s) 1180, 1181, 1732
AsuHPI GGTGA 1 cut(s) 956
AvaI CYCGRG 3 cut(s) 714, 1179, 1976
AvaII GGWCC 4 cut(s) 110, 126, 171, 2181
BanI GGYRCC 1 cut(s) 281
BanII GRGCYC 2 cut(s) 54, 1021
BarI GAAGNNNNNNTAC 2 cut(s) 1044, 1076
BbsI GAAGAC 2 cut(s) 1485, 1596
Bbv12I GWGCWC 2 cut(s) 54, 1021
BbvI GCAGC 5 cut(s) 52, 559, 842, 1094, 1223
BccI CCATC 5 cut(s) 17, 63, 1282, 1785, 1946
BcgI CGANNNNNNTGC 2 cut(s) 1394, 1428
BciT130I CCWGG 2 cut(s) 286, 1788
BcnI CCSGG 3 cut(s) 1180, 1181, 1732
BcoDI GTCTC 3 cut(s) 37, 123, 141
BfaI CTAG 7 cut(s) 498, 1064, 1442, 1611, 1634, 1832, 2051
BfmI CTRYAG 4 cut(s) 66, 502, 654, 2121
BisI GCNGC 6 cut(s) 66, 573, 831, 860, 1083, 1212
BlsI GCNGC 6 cut(s) 67, 574, 832, 861, 1084, 1213
BmcAI AGTACT 1 cut(s) 1337
Bme1390I CCNGG 5 cut(s) 286, 1180, 1181, 1732, 1788
Bme18I GGWCC 4 cut(s) 110, 126, 171, 2181
BmeT110I CYCGRG 3 cut(s) 714, 1179, 1976
BmgT120I GGNCC 5 cut(s) 110, 126, 171, 1729, 2181
BmiI GGNNCC 6 cut(s) 112, 128, 173, 283, 1263, 2182
BmrFI CCNGG 5 cut(s) 286, 1180, 1181, 1732, 1788
BmsI GCATC 8 cut(s) 52, 171, 956, 978, 1223, 1487, 1865, 2068
BpiI GAAGAC 2 cut(s) 1485, 1596
BpmI CTGGAG 1 cut(s) 1397
BpuEI CTTGAG 1 cut(s) 1090
BpuMI CCSGG 3 cut(s) 1180, 1181, 1732
BsaHI GRCGYC 2 cut(s) 250, 1042
BsaJI CCNNGG 5 cut(s) 122, 167, 285, 1179, 1180
BsaWI WCCGGW 1 cut(s) 1576
BsaXI ACNNNNNCTCC 4 cut(s) 446, 476, 1842, 1872
Bsc4I CCNNNNNNNGG 1 cut(s) 260
Bse118I RCCGGY 1 cut(s) 1056
Bse1I ACTGG 1 cut(s) 199
Bse3DI GCAATG 5 cut(s) 708, 1038, 1452, 1605, 1718
BseBI CCWGG 2 cut(s) 286, 1788
BseDI CCNNGG 5 cut(s) 122, 167, 285, 1179, 1180
BseGI GGATG 6 cut(s) 1140, 1400, 1630, 1796, 1810, 2074
BseLI CCNNNNNNNGG 1 cut(s) 260
BseMI GCAATG 5 cut(s) 708, 1038, 1452, 1605, 1718
BseMII CTCAG 5 cut(s) 30, 375, 804, 837, 1371
BseNI ACTGG 1 cut(s) 199
BseXI GCAGC 5 cut(s) 52, 559, 842, 1094, 1223
BseYI CCCAGC 1 cut(s) 1224
BsgI GTGCAG 2 cut(s) 86, 96
BshFI GGCC 3 cut(s) 1056, 1730, 1868
BshNI GGYRCC 1 cut(s) 281
BsiHKAI GWGCWC 2 cut(s) 54, 1021
BsiHKCI CYCGRG 3 cut(s) 714, 1179, 1976
BsiSI CCGG 4 cut(s) 1057, 1180, 1577, 1732
BslFI GGGAC 4 cut(s) 96, 112, 139, 157
BslI CCNNNNNNNGG 1 cut(s) 260
BsmAI GTCTC 3 cut(s) 37, 123, 141
BsmFI GGGAC 4 cut(s) 96, 112, 139, 157
BsmI GAATGC 1 cut(s) 1417
BsnI GGCC 3 cut(s) 1056, 1730, 1868
BsoBI CYCGRG 3 cut(s) 714, 1179, 1976
Bsp1286I GDGCHC 2 cut(s) 54, 1021
Bsp1407I TGTACA 1 cut(s) 241
Bsp143I GATC 7 cut(s) 79, 325, 610, 849, 1200, 1450, 1613
BspACI CCGC 4 cut(s) 6, 859, 862, 1551
BspANI GGCC 3 cut(s) 1056, 1730, 1868
BspCNI CTCAG 5 cut(s) 31, 376, 805, 838, 1370
BspLI GGNNCC 6 cut(s) 112, 128, 173, 283, 1263, 2182
BspMAI CTGCAG 3 cut(s) 70, 658, 2125
BspPI GGATC 4 cut(s) 74, 320, 605, 1458
BspT107I GGYRCC 1 cut(s) 281
BsrBI CCGCTC 2 cut(s) 6, 859
BsrDI GCAATG 5 cut(s) 708, 1038, 1452, 1605, 1718
BsrFI RCCGGY 1 cut(s) 1056
BsrGI TGTACA 1 cut(s) 241
BsrI ACTGG 1 cut(s) 199
BssAI RCCGGY 1 cut(s) 1056
BssECI CCNNGG 5 cut(s) 122, 167, 285, 1179, 1180
BssMI GATC 7 cut(s) 79, 325, 610, 849, 1200, 1450, 1613
BssNI GRCGYC 2 cut(s) 250, 1042
BssT1I CCWWGG 2 cut(s) 122, 167
Bst2UI CCWGG 2 cut(s) 286, 1788
Bst4CI ACNGT 5 cut(s) 322, 688, 889, 1194, 1491
Bst6I CTCTTC 5 cut(s) 800, 875, 1647, 1830, 2029
BstACI GRCGYC 2 cut(s) 250, 1042
BstAPI GCANNNNNTGC 3 cut(s) 74, 596, 2120
BstAUI TGTACA 1 cut(s) 241
BstC8I GCNNGC 3 cut(s) 961, 1058, 1895
BstEII GGTNACC 1 cut(s) 1933
BstF5I GGATG 6 cut(s) 1140, 1400, 1630, 1796, 1810, 2074
BstHHI GCGC 1 cut(s) 217
BstKTI GATC 7 cut(s) 82, 328, 613, 852, 1203, 1453, 1616
BstMAI GTCTC 3 cut(s) 37, 123, 141
BstMBI GATC 7 cut(s) 79, 325, 610, 849, 1200, 1450, 1613
BstMWI GCNNNNNNNGC 5 cut(s) 49, 74, 223, 596, 2120
BstNI CCWGG 2 cut(s) 286, 1788
BstNSI RCATGY 2 cut(s) 1897, 2168
BstPI GGTNACC 1 cut(s) 1933
BstSCI CCNGG 5 cut(s) 284, 1178, 1179, 1730, 1786
BstSFI CTRYAG 4 cut(s) 66, 502, 654, 2121
BstV1I GCAGC 5 cut(s) 52, 559, 842, 1094, 1223
BstV2I GAAGAC 2 cut(s) 1485, 1596
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
BsuRI GGCC 3 cut(s) 1056, 1730, 1868
BtsCI GGATG 6 cut(s) 1140, 1400, 1630, 1796, 1810, 2074
BtsI GCAGTG 3 cut(s) 98, 358, 465
BtsIMutI CAGTG 8 cut(s) 25, 98, 318, 358, 465, 946, 1623, 1673
Cac8I GCNNGC 3 cut(s) 961, 1058, 1895
CfoI GCGC 1 cut(s) 217
Cfr10I RCCGGY 1 cut(s) 1056
Cfr13I GGNCC 5 cut(s) 110, 126, 171, 1729, 2181
Cfr9I CCCGGG 1 cut(s) 1179
CseI GACGC 2 cut(s) 239, 1031
Csp6I GTAC 2 cut(s) 242, 1336
CspCI CAANNNNNGTGG 4 cut(s) 411, 446, 1629, 1664
CviQI GTAC 2 cut(s) 242, 1336
DpnI GATC 7 cut(s) 81, 327, 612, 851, 1202, 1452, 1615
DpnII GATC 7 cut(s) 79, 325, 610, 849, 1200, 1450, 1613
Eam1104I CTCTTC 5 cut(s) 800, 875, 1647, 1830, 2029
EarI CTCTTC 5 cut(s) 800, 875, 1647, 1830, 2029
Ecl136II GAGCTC 2 cut(s) 52, 1019
Eco130I CCWWGG 2 cut(s) 122, 167
Eco147I AGGCCT 1 cut(s) 1868
Eco24I GRGCYC 2 cut(s) 54, 1021
Eco32I GATATC 1 cut(s) 1354
Eco47I GGWCC 4 cut(s) 110, 126, 171, 2181
Eco53kI GAGCTC 2 cut(s) 52, 1019
Eco57I CTGAAG 2 cut(s) 1071, 1107
Eco88I CYCGRG 3 cut(s) 714, 1179, 1976
Eco91I GGTNACC 1 cut(s) 1933
EcoICRI GAGCTC 2 cut(s) 52, 1019
EcoO109I RGGNCCY 3 cut(s) 126, 171, 2181
EcoO65I GGTNACC 1 cut(s) 1933
EcoRI GAATTC 1 cut(s) 437
EcoRII CCWGG 2 cut(s) 284, 1786
EcoRV GATATC 1 cut(s) 1354
EcoT14I CCWWGG 2 cut(s) 122, 167
EcoT22I ATGCAT 2 cut(s) 971, 1880
EcoT38I GRGCYC 2 cut(s) 54, 1021
ErhI CCWWGG 2 cut(s) 122, 167
FalI AAGNNNNNCTT 4 cut(s) 809, 841, 1947, 1979
FaqI GGGAC 4 cut(s) 96, 112, 139, 157
FblI GTMKAC 1 cut(s) 1783
Fnu4HI GCNGC 6 cut(s) 66, 573, 831, 860, 1083, 1212
FokI GGATG 6 cut(s) 1147, 1387, 1637, 1803, 1817, 2081
FriOI GRGCYC 2 cut(s) 54, 1021
Fsp4HI GCNGC 6 cut(s) 66, 573, 831, 860, 1083, 1212
FspBI CTAG 7 cut(s) 498, 1064, 1442, 1611, 1634, 1832, 2051
FspI TGCGCA 1 cut(s) 216
GlaI GCGC 1 cut(s) 216
GluI GCNGC 6 cut(s) 66, 573, 831, 860, 1083, 1212
GsaI CCCAGC 1 cut(s) 1228
GsuI CTGGAG 1 cut(s) 1397
HaeIII GGCC 3 cut(s) 1056, 1730, 1868
HapII CCGG 4 cut(s) 1057, 1180, 1577, 1732
HgaI GACGC 2 cut(s) 239, 1031
HhaI GCGC 1 cut(s) 217
Hin1I GRCGYC 2 cut(s) 250, 1042
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HincII GTYRAC 1 cut(s) 892
HindII GTYRAC 1 cut(s) 892
HindIII AAGCTT 2 cut(s) 524, 1926
HpaII CCGG 4 cut(s) 1057, 1180, 1577, 1732
HphI GGTGA 1 cut(s) 956
Hpy166II GTNNAC 5 cut(s) 209, 365, 625, 892, 1784
Hpy188I TCNGA 7 cut(s) 330, 1219, 1360, 1384, 1405, 1455, 2033
Hpy188III TCNNGA 8 cut(s) 47, 1331, 1376, 1568, 1848, 1995, 2051, 2075
Hpy8I GTNNAC 5 cut(s) 209, 365, 625, 892, 1784
Hpy99I CGWCG 1 cut(s) 2108
HpyAV CCTTC 5 cut(s) 811, 1046, 1085, 1462, 1876
HpyCH4III ACNGT 5 cut(s) 322, 688, 889, 1194, 1491
HpyCH4IV ACGT 1 cut(s) 2103
HpyF10VI GCNNNNNNNGC 5 cut(s) 49, 74, 223, 596, 2120
HpySE526I ACGT 1 cut(s) 2103
Hsp92I GRCGYC 2 cut(s) 250, 1042
HspAI GCGC 1 cut(s) 215
KroI GCCGGC 1 cut(s) 1056
KroNI GCCGGC 1 cut(s) 1058
Kzo9I GATC 7 cut(s) 79, 325, 610, 849, 1200, 1450, 1613
LmnI GCTCC 4 cut(s) 49, 57, 1692, 1744
Lsp1109I GCAGC 5 cut(s) 52, 559, 842, 1094, 1223
LweI GCATC 8 cut(s) 52, 171, 956, 978, 1223, 1487, 1865, 2068
MaeI CTAG 7 cut(s) 498, 1064, 1442, 1611, 1634, 1832, 2051
MaeII ACGT 1 cut(s) 2103
MaeIII GTNAC 6 cut(s) 332, 944, 1158, 1248, 1933, 2167
MalI GATC 7 cut(s) 81, 327, 612, 851, 1202, 1452, 1615
MbiI CCGCTC 2 cut(s) 6, 859
MboI GATC 7 cut(s) 79, 325, 610, 849, 1200, 1450, 1613
MfeI CAATTG 1 cut(s) 1686
MflI RGATCY 1 cut(s) 79
MhlI GDGCHC 2 cut(s) 54, 1021
MluCI AATT 7 cut(s) 423, 437, 641, 1185, 1686, 2090, 2156
MlyI GAGTC 3 cut(s) 1388, 1853, 1992
MmeI TCCRAC 1 cut(s) 2112
Mph1103I ATGCAT 2 cut(s) 971, 1880
MroNI GCCGGC 1 cut(s) 1056
MroXI GAANNNNTTC 1 cut(s) 2090
MseI TTAA 8 cut(s) 773, 1011, 1097, 1244, 1305, 1425, 1704, 1809
MslI CAYNNNNRTG 1 cut(s) 2006
MspA1I CMGCKG 2 cut(s) 1085, 1511
MspI CCGG 4 cut(s) 1057, 1180, 1577, 1732
MspR9I CCNGG 5 cut(s) 286, 1180, 1181, 1732, 1788
MunI CAATTG 1 cut(s) 1686
Mva1269I GAATGC 1 cut(s) 1417
MvaI CCWGG 2 cut(s) 286, 1788
MwoI GCNNNNNNNGC 5 cut(s) 49, 74, 223, 596, 2120
NaeI GCCGGC 1 cut(s) 1058
NciI CCSGG 3 cut(s) 1180, 1181, 1732
NdeII GATC 7 cut(s) 79, 325, 610, 849, 1200, 1450, 1613
NgoMIV GCCGGC 1 cut(s) 1056
NlaIV GGNNCC 6 cut(s) 112, 128, 173, 283, 1263, 2182
NmuCI GTSAC 3 cut(s) 944, 1158, 1248
NsbI TGCGCA 1 cut(s) 216
NsiI ATGCAT 2 cut(s) 971, 1880
NspI RCATGY 2 cut(s) 1897, 2168
PaeI GCATGC 1 cut(s) 1897
PaeR7I CTCGAG 1 cut(s) 1976
PceI AGGCCT 1 cut(s) 1868
PciI ACATGT 1 cut(s) 2164
PcsI WCGNNNNNNNCGW 1 cut(s) 2100
PctI GAATGC 1 cut(s) 1417
PdiI GCCGGC 1 cut(s) 1058
PdmI GAANNNNTTC 1 cut(s) 2090
PfeI GAWTC 7 cut(s) 650, 782, 1547, 1682, 1969, 2045, 2135
PflFI GACNNNGTC 1 cut(s) 896
PkrI GCNGC 6 cut(s) 67, 574, 832, 861, 1084, 1213
PleI GAGTC 3 cut(s) 1387, 1852, 1992
PpsI GAGTC 3 cut(s) 1387, 1852, 1992
PpuMI RGGWCCY 3 cut(s) 126, 171, 2181
PscI ACATGT 1 cut(s) 2164
Psp124BI GAGCTC 2 cut(s) 54, 1021
Psp5II RGGWCCY 3 cut(s) 126, 171, 2181
Psp6I CCWGG 2 cut(s) 284, 1786
PspEI GGTNACC 1 cut(s) 1933
PspFI CCCAGC 1 cut(s) 1224
PspGI CCWGG 2 cut(s) 284, 1786
PspN4I GGNNCC 6 cut(s) 112, 128, 173, 283, 1263, 2182
PspPI GGNCC 5 cut(s) 110, 126, 171, 1729, 2181
PspPPI RGGWCCY 3 cut(s) 126, 171, 2181
PspXI VCTCGAGB 1 cut(s) 1976
PstI CTGCAG 3 cut(s) 70, 658, 2125
PsuI RGATCY 1 cut(s) 79
PsyI GACNNNGTC 1 cut(s) 896
PvuII CAGCTG 2 cut(s) 1085, 1511
RsaI GTAC 2 cut(s) 243, 1337
RsaNI GTAC 2 cut(s) 242, 1336
RseI CAYNNNNRTG 1 cut(s) 2006
SacI GAGCTC 2 cut(s) 54, 1021
SaqAI TTAA 8 cut(s) 773, 1011, 1097, 1244, 1305, 1425, 1704, 1809
SatI GCNGC 6 cut(s) 66, 573, 831, 860, 1083, 1212
Sau3AI GATC 7 cut(s) 79, 325, 610, 849, 1200, 1450, 1613
Sau96I GGNCC 5 cut(s) 110, 126, 171, 1729, 2181
ScaI AGTACT 1 cut(s) 1337
SchI GAGTC 3 cut(s) 1388, 1853, 1992
ScrFI CCNGG 5 cut(s) 286, 1180, 1181, 1732, 1788
SduI GDGCHC 2 cut(s) 54, 1021
SfaNI GCATC 8 cut(s) 52, 171, 956, 978, 1223, 1487, 1865, 2068
SfcI CTRYAG 4 cut(s) 66, 502, 654, 2121
Sfr274I CTCGAG 1 cut(s) 1976
SinI GGWCC 4 cut(s) 110, 126, 171, 2181
SlaI CTCGAG 1 cut(s) 1976
SmaI CCCGGG 1 cut(s) 1181
SmiMI CAYNNNNRTG 1 cut(s) 2006
SmlI CTYRAG 2 cut(s) 1105, 1976
SmoI CTYRAG 2 cut(s) 1105, 1976
SphI GCATGC 1 cut(s) 1897
Sse9I AATT 7 cut(s) 423, 437, 641, 1185, 1686, 2090, 2156
SseBI AGGCCT 1 cut(s) 1868
SsiI CCGC 4 cut(s) 6, 859, 862, 1551
SspMI CTAG 7 cut(s) 498, 1064, 1442, 1611, 1634, 1832, 2051
SstI GAGCTC 2 cut(s) 54, 1021
StuI AGGCCT 1 cut(s) 1868
StyD4I CCNGG 5 cut(s) 284, 1178, 1179, 1730, 1786
StyI CCWWGG 2 cut(s) 122, 167
TaaI ACNGT 5 cut(s) 322, 688, 889, 1194, 1491
TaiI ACGT 1 cut(s) 2106
TaqI TCGA 4 cut(s) 1842, 1873, 1977, 2106
TasI AATT 7 cut(s) 423, 437, 641, 1185, 1686, 2090, 2156
TatI WGTACW 2 cut(s) 241, 1335
TauI GCSGC 1 cut(s) 862
TfiI GAWTC 7 cut(s) 650, 782, 1547, 1682, 1969, 2045, 2135
Tru1I TTAA 8 cut(s) 773, 1011, 1097, 1244, 1305, 1425, 1704, 1809
Tru9I TTAA 8 cut(s) 773, 1011, 1097, 1244, 1305, 1425, 1704, 1809
TscAI CASTG 8 cut(s) 25, 105, 325, 358, 472, 946, 1623, 1673
TseFI GTSAC 3 cut(s) 944, 1158, 1248
TseI GCWGC 5 cut(s) 65, 572, 830, 1082, 1211
Tsp45I GTSAC 3 cut(s) 944, 1158, 1248
TspDTI ATGAA 9 cut(s) 489, 697, 779, 1017, 1325, 1641, 1895, 2024, 2130
TspMI CCCGGG 1 cut(s) 1179
TspRI CASTG 8 cut(s) 25, 105, 325, 358, 472, 946, 1623, 1673
Tth111I GACNNNGTC 1 cut(s) 896
VpaK11BI GGWCC 4 cut(s) 110, 126, 171, 2181
XapI RAATTY 2 cut(s) 437, 1185
XbaI TCTAGA 1 cut(s) 2050
XceI RCATGY 2 cut(s) 1897, 2168
XhoI CTCGAG 1 cut(s) 1976
XmaI CCCGGG 1 cut(s) 1179
XmiI GTMKAC 1 cut(s) 1783
XmnI GAANNNNTTC 1 cut(s) 2090
XspI CTAG 7 cut(s) 498, 1064, 1442, 1611, 1634, 1832, 2051
ZrmI AGTACT 1 cut(s) 1337
Zsp2I ATGCAT 2 cut(s) 971, 1880
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.