Rw6G016750

Programmed cell death protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0011088
Physical Location & Seq
Forward (+)
33023069 .. 33025727
2659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G016750.1

Sequence Viewer

Length: 2199 bp
ATGGAGTTCAGTGATGGTTTTGTCTCAAATGAGCATCGGGAGCTCCACCGTTCTGCTACAGAAAGTGCAGATCCATTATCTGCCTCTCTGCTGCACATTGGTCCAAAGTCTCCAAGGTCCCCAAAGTCTCCCAAATCCCCAAAGTCTCCCAAATCCCCAAAGTCCCCAAACTCTCCAAGGTCCCCAAAGGTGCAGCGAAAAACTGGAAAAGTTAGTCCACTCGCGCATGATAGGCATTCACATTCTTCTGTAGATGGGCGTCCTAAAAAGGGTGGTTCTGGGGGAAAAGGCACCTGGGGAGGGTTACTTGATACCGACGACAGTTGCACCGTTGAGTCTAGTGACCCTAACTTTGATAGCAGTGAGGAATGTGAACAATCAAATGCAAAATCTGAGAGAGTGGATTTCGAGGAATACAAAAAGAAAGCAACAGTAATAGTGGAGGAATTCTTTGCTACCGATGACATTACCTCCACTGCAAATGAACTAAGAGAGCTTGATATGCCTAGCTATAGCTTCTACTTTGTAAAGAAACTTGTTTCTAAGGCTATGGATAGGCATGACAAGGAGAAAGAAATGGCTGCTGTTCTTTTATCTGCATTATATGCTGATTTCATTGATCCCCCACAGGTTTACAAAGGGTTCTGTAAATTGGTAGAATCTGCAGATGACTTGATTGTGGATATACCGGATACAGTTGATGTTCTTGCACTTTTCATTGCCCGAGCTGTTGTTGATGACATACTTCCTCCTGCATTTTTGAAAAAACAAATGAATTATTTACCTGAGGACTCAAAAGGGGTTGAAGTTTTGAAGAGAGCTGAGAAGGGCTACTTAGCAGCCCCTCTCCACGCTGAAATCATCGAGCGGCGGTGGGGAGGTAGCAAAAAGAGAACTGTTGAGGATGTTAAGGCTAAGATAAATAATTTGTTGATAGAGTATGTAGTCAGTGGTGACAAGAAAGAGGCTTGCAGATGCATCAAGGATTTGAAAGTTCCTTTTTTCCACCATGAAATAGTTAAGCGAGCTCTTGTAATGGCAATGGAGAGGCGGCAAGCTGAAGGCCGGCTACTAGATTTGCTGAAAGAAGCTGCCGAAGAAGGTTTAATCAACTCAAGCCAAGTATCAAAAGGCTTTGGTAGGATGATCGACTATGTTGATGACTTGTCGCTTGACATACCAAATGCCCGGGGAATATTACAGTCATTGATCTCTAAGGCAGCATCGGAGGGCTGGGTGTGTGCTTCGTCCTTAAAGTCACTCTCATTGGAGCCAGAAAAGCCATCATTAGAAGATAGCGTTGCCAGAGCTTTCAAGATGAAGGCACAATCTATTATTCAAGAGTACTTCTTGTCTGGCGATATCTCAGAGGTAAGCAGTTGTCTAGAGTCAGAGAACAGTACTTGCTTGTCCGAACTGAATGCTATCTTTGTTAAAAGACTGATAACTCTAGCAATGGATCGGAAGAACAGGGAGAAGGAAATGGCATCCGTGTTGCTGTCTTCTCTATGTTTTCCAGCTGATGATGTTGTAAATGGGTTTGTAATGCTGATAGAATCCGCAGATGACACAGCTCTGGATAATCCTGTTGTTGTTGAAGACCTTGCAATGTTTCTTGCTAGATCAGTGGTGGATGAAGTTCTAGCCCCACAACATTTGGAAGAGATTGGAAGTCAGTGTGTGGCACCTGATTCAATTGGTAGCAAGGTTCTTAAAATGGCAAAGTCACTGCTAAAGGCCCGGCTTTCTGGGGAGCGAATACTAAGGTGTTGGGGTGGTGGAGGAAGCAGCAGGCCTGGATGGGCAGTTGAGGATGTTAAGGACAAGATTGGGAAGTTGCTAGAAGAGTTTGAGTCTGGAGGTGGAGTGAGGGAGGCTTGCCGCTGCATGAAGGAGTTAGGCATGCCATTTTTCAACCATGAGGTTGTCAAAAAAGCTTTGGTCAGCATTATGGAAAAGAAGAATGAAAGACTTTGGATTCTGCTCGAGGAATGTTTTGGTTCTGGACTCATAACAATGAACCAAATGACCAAGGGATTCGGGAGAGTTGCAGAATCTCTAGATGATTTAGCTTTGGATGTTCCTGATGCCCAGAAACAATTCGGTCGTTACGTCGAACGAGCAAAGACTGCAGGGTGGTTGGATTCCTCATTTTGTTTCAGCAAATCTGGACATGTCACAGAGAATGGGACCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05205 ko05206 map05205 map05206
Pfam Domains
Protein Families
MA3

Protein Analysis

732

Amino Acids

80.79

Weight (kDa)

5.64

Isoelectric Point (pI)

50.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MA3 PF02847 140 - 250 2e-21 MA3 domain
MA3 PF02847 304 - 412 6.4e-28 MA3 domain
MA3 PF02847 438 - 548 1.5e-17 MA3 domain
MA3 PF02847 606 - 715 8.1e-30 MA3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22730
fragaria_vesca FvH4_2g12790
malus_domestica MD05G1036500.v1.1 MD10G1038400.v1.1
prunus_persica Prupe.8G044800_v2.0.a1
pyrus_communis pycom05g02690 pycom10g02640 pycom10g02760
rosa_chinensis RchiOBHm_Chr6g0273671
rosa_laevigata RLG00000013603
rosa_multiflora Rmu_sc0002231.1_g000021
rosa_roxburghii Rroxscaffold_7G00195170
rosa_rugosa Rorug06G0076800 Rorug06G0076900 Rorug06G0077000
rosa_samantha Rh6AG191400 Rh6BG195400 Rh6CG194900 Rh6DG186800
rosa_wichuraiana Rw6G016750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 290, 1684
AccBSI CCGCTC 1 cut(s) 868
AccII CGCG 1 cut(s) 224
AciI CCGC 5 cut(s) 868, 871, 1051, 1560, 1882
AclWI GGATC 3 cut(s) 65, 614, 1467
AcsI RAATTY 1 cut(s) 446
AcuI CTGAAG 1 cut(s) 1080
AcyI GRCGYC 1 cut(s) 259
AfaI GTAC 2 cut(s) 1346, 1402
AfiI CCNNNNNNNGG 2 cut(s) 269, 300
AflIII ACRYGT 1 cut(s) 2173
AgsI TTSAA 9 cut(s) 763, 806, 814, 991, 1315, 1340, 1598, 1695, 1915
AjnI CCWGG 2 cut(s) 293, 1795
Alw21I GWGCWC 2 cut(s) 45, 1030
Alw26I GTCTC 4 cut(s) 28, 114, 132, 150
AlwI GGATC 3 cut(s) 65, 614, 1467
Ama87I CYCGRG 3 cut(s) 723, 1188, 1985
AoxI GGCC 3 cut(s) 1063, 1737, 1793
ApeKI GCWGC 8 cut(s) 91, 193, 581, 839, 1091, 1220, 1788, 1884
ApoI RAATTY 1 cut(s) 446
ArsI GACNNNNNNTTYG 2 cut(s) 335, 367
Asp700I GAANNNNTTC 1 cut(s) 2099
AspLEI GCGC 1 cut(s) 226
AspS9I GGNCC 5 cut(s) 101, 117, 180, 1738, 2190
AsuC2I CCSGG 3 cut(s) 1189, 1190, 1741
AsuHPI GGTGA 1 cut(s) 965
AvaI CYCGRG 3 cut(s) 723, 1188, 1985
AvaII GGWCC 4 cut(s) 101, 117, 180, 2190
AxyI CCTNAGG 1 cut(s) 786
BanI GGYRCC 2 cut(s) 290, 1684
BanII GRGCYC 2 cut(s) 45, 1030
BarI GAAGNNNNNNTAC 2 cut(s) 1053, 1085
BbsI GAAGAC 2 cut(s) 1494, 1605
Bbv12I GWGCWC 2 cut(s) 45, 1030
BbvI GCAGC 8 cut(s) 78, 205, 568, 851, 1078, 1232, 1800, 1871
BccI CCATC 4 cut(s) 8, 248, 1291, 1794
BcgI CGANNNNNNTGC 2 cut(s) 1403, 1437
BciT130I CCWGG 2 cut(s) 295, 1797
BciVI GTATCC 1 cut(s) 685
BcnI CCSGG 3 cut(s) 1189, 1190, 1741
BcoDI GTCTC 4 cut(s) 28, 114, 132, 150
BfaI CTAG 9 cut(s) 339, 507, 1073, 1385, 1451, 1620, 1643, 1841, 2060
BfmI CTRYAG 5 cut(s) 57, 249, 511, 663, 2130
BfuI GTATCC 1 cut(s) 685
BmcAI AGTACT 2 cut(s) 1346, 1402
Bme1390I CCNGG 5 cut(s) 295, 1189, 1190, 1741, 1797
Bme18I GGWCC 4 cut(s) 101, 117, 180, 2190
BmeT110I CYCGRG 3 cut(s) 723, 1188, 1985
BmgT120I GGNCC 5 cut(s) 101, 117, 180, 1738, 2190
BmiI GGNNCC 6 cut(s) 119, 182, 292, 1272, 1686, 2191
BmrFI CCNGG 5 cut(s) 295, 1189, 1190, 1741, 1797
BmsI GCATC 6 cut(s) 43, 965, 987, 1232, 1496, 2077
BpiI GAAGAC 2 cut(s) 1494, 1605
BpmI CTGGAG 1 cut(s) 1878
BpuEI CTTGAG 1 cut(s) 1099
BpuMI CCSGG 3 cut(s) 1189, 1190, 1741
BsaHI GRCGYC 1 cut(s) 259
BsaJI CCNNGG 6 cut(s) 113, 176, 294, 1188, 1189, 2031
BsaWI WCCGGW 1 cut(s) 688
BsaXI ACNNNNNCTCC 4 cut(s) 455, 485, 1851, 1881
Bsc4I CCNNNNNNNGG 2 cut(s) 269, 300
Bse118I RCCGGY 1 cut(s) 1065
Bse1I ACTGG 1 cut(s) 208
Bse21I CCTNAGG 1 cut(s) 786
Bse3DI GCAATG 4 cut(s) 717, 1047, 1461, 1614
BseBI CCWGG 2 cut(s) 295, 1797
BseDI CCNNGG 6 cut(s) 113, 176, 294, 1188, 1189, 2031
BseGI GGATG 7 cut(s) 910, 1149, 1487, 1639, 1805, 1819, 2083
BseLI CCNNNNNNNGG 2 cut(s) 269, 300
BseMI GCAATG 4 cut(s) 717, 1047, 1461, 1614
BseMII CTCAG 4 cut(s) 384, 777, 813, 1380
BseNI ACTGG 1 cut(s) 208
BseXI GCAGC 8 cut(s) 78, 205, 568, 851, 1078, 1232, 1800, 1871
BseYI CCCAGC 1 cut(s) 1233
BsgI GTGCAG 3 cut(s) 77, 87, 212
Bsh1236I CGCG 1 cut(s) 224
Bsh1285I CGRYCG 1 cut(s) 2107
BshFI GGCC 3 cut(s) 1065, 1739, 1795
BshNI GGYRCC 2 cut(s) 290, 1684
BsiEI CGRYCG 1 cut(s) 2107
BsiHKAI GWGCWC 2 cut(s) 45, 1030
BsiHKCI CYCGRG 3 cut(s) 723, 1188, 1985
BsiSI CCGG 4 cut(s) 689, 1066, 1189, 1741
BslFI GGGAC 3 cut(s) 103, 148, 166
BslI CCNNNNNNNGG 2 cut(s) 269, 300
BsmAI GTCTC 4 cut(s) 28, 114, 132, 150
BsmFI GGGAC 3 cut(s) 103, 148, 166
BsmI GAATGC 2 cut(s) 235, 1426
BsnI GGCC 3 cut(s) 1065, 1739, 1795
BsoBI CYCGRG 3 cut(s) 723, 1188, 1985
Bsp1286I GDGCHC 2 cut(s) 45, 1030
Bsp143I GATC 6 cut(s) 70, 619, 1146, 1209, 1459, 1622
BspACI CCGC 5 cut(s) 868, 871, 1051, 1560, 1882
BspANI GGCC 3 cut(s) 1065, 1739, 1795
BspCNI CTCAG 4 cut(s) 385, 778, 814, 1379
BspFNI CGCG 1 cut(s) 224
BspLI GGNNCC 6 cut(s) 119, 182, 292, 1272, 1686, 2191
BspMAI CTGCAG 2 cut(s) 667, 2134
BspPI GGATC 3 cut(s) 65, 614, 1467
BspT107I GGYRCC 2 cut(s) 290, 1684
BsrBI CCGCTC 1 cut(s) 868
BsrDI GCAATG 4 cut(s) 717, 1047, 1461, 1614
BsrFI RCCGGY 1 cut(s) 1065
BsrI ACTGG 1 cut(s) 208
BssAI RCCGGY 1 cut(s) 1065
BssECI CCNNGG 6 cut(s) 113, 176, 294, 1188, 1189, 2031
BssMI GATC 6 cut(s) 70, 619, 1146, 1209, 1459, 1622
BssNI GRCGYC 1 cut(s) 259
BssT1I CCWWGG 3 cut(s) 113, 176, 2031
Bst2UI CCWGG 2 cut(s) 295, 1797
Bst4CI ACNGT 8 cut(s) 50, 323, 331, 433, 697, 898, 1203, 1400
Bst6I CTCTTC 3 cut(s) 809, 1656, 1839
BstACI GRCGYC 1 cut(s) 259
BstAPI GCANNNNNTGC 2 cut(s) 605, 2129
BstC8I GCNNGC 7 cut(s) 970, 1026, 1056, 1067, 1793, 1879, 1904
BstF5I GGATG 7 cut(s) 910, 1149, 1487, 1639, 1805, 1819, 2083
BstFNI CGCG 1 cut(s) 224
BstHHI GCGC 1 cut(s) 226
BstKTI GATC 6 cut(s) 73, 622, 1149, 1212, 1462, 1625
BstMAI GTCTC 4 cut(s) 28, 114, 132, 150
BstMBI GATC 6 cut(s) 70, 619, 1146, 1209, 1459, 1622
BstMCI CGRYCG 1 cut(s) 2107
BstMWI GCNNNNNNNGC 6 cut(s) 40, 232, 502, 605, 1279, 2129
BstNI CCWGG 2 cut(s) 295, 1797
BstNSI RCATGY 2 cut(s) 1906, 2177
BstSCI CCNGG 5 cut(s) 293, 1187, 1188, 1739, 1795
BstSFI CTRYAG 5 cut(s) 57, 249, 511, 663, 2130
BstUI CGCG 1 cut(s) 224
BstV1I GCAGC 8 cut(s) 78, 205, 568, 851, 1078, 1232, 1800, 1871
BstV2I GAAGAC 2 cut(s) 1494, 1605
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
Bsu36I CCTNAGG 1 cut(s) 786
BsuI GTATCC 1 cut(s) 685
BsuRI GGCC 3 cut(s) 1065, 1739, 1795
BtsCI GGATG 7 cut(s) 910, 1149, 1487, 1639, 1805, 1819, 2083
BtsI GCAGTG 3 cut(s) 367, 474, 1727
BtsIMutI CAGTG 7 cut(s) 16, 367, 474, 955, 1632, 1682, 1727
Cac8I GCNNGC 7 cut(s) 970, 1026, 1056, 1067, 1793, 1879, 1904
CfoI GCGC 1 cut(s) 226
Cfr10I RCCGGY 1 cut(s) 1065
Cfr13I GGNCC 5 cut(s) 101, 117, 180, 1738, 2190
Cfr9I CCCGGG 1 cut(s) 1188
CseI GACGC 1 cut(s) 248
Csp6I GTAC 2 cut(s) 1345, 1401
CspCI CAANNNNNGTGG 2 cut(s) 1638, 1673
CviAII CATG 7 cut(s) 227, 560, 1010, 1888, 1903, 1919, 2174
CviQI GTAC 2 cut(s) 1345, 1401
DpnI GATC 6 cut(s) 72, 621, 1148, 1211, 1461, 1624
DpnII GATC 6 cut(s) 70, 619, 1146, 1209, 1459, 1622
Eam1104I CTCTTC 3 cut(s) 809, 1656, 1839
EarI CTCTTC 3 cut(s) 809, 1656, 1839
Ecl136II GAGCTC 2 cut(s) 43, 1028
Eco130I CCWWGG 3 cut(s) 113, 176, 2031
Eco147I AGGCCT 1 cut(s) 1795
Eco24I GRGCYC 2 cut(s) 45, 1030
Eco32I GATATC 1 cut(s) 1363
Eco47I GGWCC 4 cut(s) 101, 117, 180, 2190
Eco53kI GAGCTC 2 cut(s) 43, 1028
Eco57I CTGAAG 1 cut(s) 1080
Eco81I CCTNAGG 1 cut(s) 786
Eco88I CYCGRG 3 cut(s) 723, 1188, 1985
EcoICRI GAGCTC 2 cut(s) 43, 1028
EcoO109I RGGNCCY 3 cut(s) 117, 180, 2190
EcoRI GAATTC 1 cut(s) 446
EcoRII CCWGG 2 cut(s) 293, 1795
EcoRV GATATC 1 cut(s) 1363
EcoT14I CCWWGG 3 cut(s) 113, 176, 2031
EcoT22I ATGCAT 1 cut(s) 980
EcoT38I GRGCYC 2 cut(s) 45, 1030
ErhI CCWWGG 3 cut(s) 113, 176, 2031
FaeI CATG 7 cut(s) 230, 563, 1013, 1891, 1906, 1922, 2177
FalI AAGNNNNNCTT 2 cut(s) 818, 850
FaqI GGGAC 3 cut(s) 103, 148, 166
FatI CATG 7 cut(s) 226, 559, 1009, 1887, 1902, 1918, 2173
FokI GGATG 7 cut(s) 917, 1156, 1474, 1646, 1812, 1826, 2090
FriOI GRGCYC 2 cut(s) 45, 1030
FspBI CTAG 9 cut(s) 339, 507, 1073, 1385, 1451, 1620, 1643, 1841, 2060
GlaI GCGC 1 cut(s) 225
GsaI CCCAGC 1 cut(s) 1237
GsuI CTGGAG 1 cut(s) 1878
HaeIII GGCC 3 cut(s) 1065, 1739, 1795
HapII CCGG 4 cut(s) 689, 1066, 1189, 1741
HgaI GACGC 1 cut(s) 248
HhaI GCGC 1 cut(s) 226
Hin1I GRCGYC 1 cut(s) 259
Hin1II CATG 7 cut(s) 230, 563, 1013, 1891, 1906, 1922, 2177
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
HindIII AAGCTT 1 cut(s) 1935
HpaII CCGG 4 cut(s) 689, 1066, 1189, 1741
HphI GGTGA 1 cut(s) 965
Hpy166II GTNNAC 3 cut(s) 218, 374, 634
Hpy188I TCNGA 6 cut(s) 394, 1228, 1369, 1393, 1414, 1464
Hpy8I GTNNAC 3 cut(s) 218, 374, 634
Hpy99I CGWCG 2 cut(s) 320, 2117
HpyAV CCTTC 6 cut(s) 820, 1055, 1094, 1315, 1471, 1885
HpyCH4III ACNGT 8 cut(s) 50, 323, 331, 433, 697, 898, 1203, 1400
HpyCH4IV ACGT 1 cut(s) 2112
HpyF10VI GCNNNNNNNGC 6 cut(s) 40, 232, 502, 605, 1279, 2129
HpySE526I ACGT 1 cut(s) 2112
Hsp92I GRCGYC 1 cut(s) 259
Hsp92II CATG 7 cut(s) 230, 563, 1013, 1891, 1906, 1922, 2177
HspAI GCGC 1 cut(s) 224
KroI GCCGGC 1 cut(s) 1065
KroNI GCCGGC 1 cut(s) 1067
Kzo9I GATC 6 cut(s) 70, 619, 1146, 1209, 1459, 1622
LmnI GCTCC 4 cut(s) 40, 48, 1270, 1753
Lsp1109I GCAGC 8 cut(s) 78, 205, 568, 851, 1078, 1232, 1800, 1871
LweI GCATC 6 cut(s) 43, 965, 987, 1232, 1496, 2077
MaeI CTAG 9 cut(s) 339, 507, 1073, 1385, 1451, 1620, 1643, 1841, 2060
MaeII ACGT 1 cut(s) 2112
MaeIII GTNAC 7 cut(s) 303, 341, 953, 1257, 1725, 2108, 2176
MalI GATC 6 cut(s) 72, 621, 1148, 1211, 1461, 1624
MbiI CCGCTC 1 cut(s) 868
MboI GATC 6 cut(s) 70, 619, 1146, 1209, 1459, 1622
MfeI CAATTG 1 cut(s) 1695
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 2 cut(s) 45, 1030
MluCI AATT 6 cut(s) 446, 650, 775, 925, 1695, 2099
MlyI GAGTC 5 cut(s) 344, 785, 1397, 1862, 2001
MmeI TCCRAC 1 cut(s) 2121
Mph1103I ATGCAT 1 cut(s) 980
MroNI GCCGGC 1 cut(s) 1065
MroXI GAANNNNTTC 1 cut(s) 2099
MseI TTAA 8 cut(s) 909, 1020, 1106, 1253, 1434, 1713, 1818, 2197
MslI CAYNNNNRTG 1 cut(s) 2015
MspA1I CMGCKG 2 cut(s) 1520, 1884
MspI CCGG 4 cut(s) 689, 1066, 1189, 1741
MspR9I CCNGG 5 cut(s) 295, 1189, 1190, 1741, 1797
MunI CAATTG 1 cut(s) 1695
Mva1269I GAATGC 2 cut(s) 235, 1426
MvaI CCWGG 2 cut(s) 295, 1797
MvnI CGCG 1 cut(s) 224
MwoI GCNNNNNNNGC 6 cut(s) 40, 232, 502, 605, 1279, 2129
NaeI GCCGGC 1 cut(s) 1067
NciI CCSGG 3 cut(s) 1189, 1190, 1741
NdeII GATC 6 cut(s) 70, 619, 1146, 1209, 1459, 1622
NgoMIV GCCGGC 1 cut(s) 1065
NlaIII CATG 7 cut(s) 230, 563, 1013, 1891, 1906, 1922, 2177
NlaIV GGNNCC 6 cut(s) 119, 182, 292, 1272, 1686, 2191
NmuCI GTSAC 5 cut(s) 341, 953, 1257, 1725, 2176
NsiI ATGCAT 1 cut(s) 980
NspI RCATGY 2 cut(s) 1906, 2177
PaeI GCATGC 1 cut(s) 1906
PaeR7I CTCGAG 1 cut(s) 1985
PceI AGGCCT 1 cut(s) 1795
PciI ACATGT 1 cut(s) 2173
PcsI WCGNNNNNNNCGW 1 cut(s) 2109
PctI GAATGC 2 cut(s) 235, 1426
PdiI GCCGGC 1 cut(s) 1067
PdmI GAANNNNTTC 1 cut(s) 2099
PfeI GAWTC 7 cut(s) 659, 1556, 1691, 1978, 2037, 2054, 2144
PleI GAGTC 5 cut(s) 343, 785, 1396, 1861, 2001
PpsI GAGTC 5 cut(s) 343, 785, 1396, 1861, 2001
PpuMI RGGWCCY 3 cut(s) 117, 180, 2190
PscI ACATGT 1 cut(s) 2173
Psp124BI GAGCTC 2 cut(s) 45, 1030
Psp5II RGGWCCY 3 cut(s) 117, 180, 2190
Psp6I CCWGG 2 cut(s) 293, 1795
PspFI CCCAGC 1 cut(s) 1233
PspGI CCWGG 2 cut(s) 293, 1795
PspN4I GGNNCC 6 cut(s) 119, 182, 292, 1272, 1686, 2191
PspPI GGNCC 5 cut(s) 101, 117, 180, 1738, 2190
PspPPI RGGWCCY 3 cut(s) 117, 180, 2190
PspXI VCTCGAGB 1 cut(s) 1985
PstI CTGCAG 2 cut(s) 667, 2134
PsuI RGATCY 1 cut(s) 70
PvuII CAGCTG 1 cut(s) 1520
RsaI GTAC 2 cut(s) 1346, 1402
RsaNI GTAC 2 cut(s) 1345, 1401
RseI CAYNNNNRTG 1 cut(s) 2015
SacI GAGCTC 2 cut(s) 45, 1030
SaqAI TTAA 8 cut(s) 909, 1020, 1106, 1253, 1434, 1713, 1818, 2197
Sau3AI GATC 6 cut(s) 70, 619, 1146, 1209, 1459, 1622
Sau96I GGNCC 5 cut(s) 101, 117, 180, 1738, 2190
ScaI AGTACT 2 cut(s) 1346, 1402
SchI GAGTC 5 cut(s) 344, 785, 1397, 1862, 2001
ScrFI CCNGG 5 cut(s) 295, 1189, 1190, 1741, 1797
SduI GDGCHC 2 cut(s) 45, 1030
SfaNI GCATC 6 cut(s) 43, 965, 987, 1232, 1496, 2077
SfcI CTRYAG 5 cut(s) 57, 249, 511, 663, 2130
Sfr274I CTCGAG 1 cut(s) 1985
SinI GGWCC 4 cut(s) 101, 117, 180, 2190
SlaI CTCGAG 1 cut(s) 1985
SmaI CCCGGG 1 cut(s) 1190
SmiMI CAYNNNNRTG 1 cut(s) 2015
SmlI CTYRAG 2 cut(s) 1114, 1985
SmoI CTYRAG 2 cut(s) 1114, 1985
SphI GCATGC 1 cut(s) 1906
Sse9I AATT 6 cut(s) 446, 650, 775, 925, 1695, 2099
SseBI AGGCCT 1 cut(s) 1795
SsiI CCGC 5 cut(s) 868, 871, 1051, 1560, 1882
SspI AATATT 1 cut(s) 1197
SspMI CTAG 9 cut(s) 339, 507, 1073, 1385, 1451, 1620, 1643, 1841, 2060
SstI GAGCTC 2 cut(s) 45, 1030
StuI AGGCCT 1 cut(s) 1795
StyD4I CCNGG 5 cut(s) 293, 1187, 1188, 1739, 1795
StyI CCWWGG 3 cut(s) 113, 176, 2031
TaaI ACNGT 8 cut(s) 50, 323, 331, 433, 697, 898, 1203, 1400
TaiI ACGT 1 cut(s) 2115
TaqI TCGA 5 cut(s) 408, 864, 1149, 1986, 2115
TaqII GACCGA 1 cut(s) 2093
TasI AATT 6 cut(s) 446, 650, 775, 925, 1695, 2099
TatI WGTACW 2 cut(s) 1344, 1400
TauI GCSGC 3 cut(s) 871, 1054, 1884
TfiI GAWTC 7 cut(s) 659, 1556, 1691, 1978, 2037, 2054, 2144
Tru1I TTAA 8 cut(s) 909, 1020, 1106, 1253, 1434, 1713, 1818, 2197
Tru9I TTAA 8 cut(s) 909, 1020, 1106, 1253, 1434, 1713, 1818, 2197
TscAI CASTG 7 cut(s) 16, 367, 481, 955, 1632, 1682, 1734
TseFI GTSAC 5 cut(s) 341, 953, 1257, 1725, 2176
TseI GCWGC 8 cut(s) 91, 193, 581, 839, 1091, 1220, 1788, 1884
Tsp45I GTSAC 5 cut(s) 341, 953, 1257, 1725, 2176
TspGWI ACGGA 1 cut(s) 1480
TspMI CCCGGG 1 cut(s) 1188
TspRI CASTG 7 cut(s) 16, 367, 481, 955, 1632, 1682, 1734
VpaK11BI GGWCC 4 cut(s) 101, 117, 180, 2190
XapI RAATTY 1 cut(s) 446
XbaI TCTAGA 2 cut(s) 1384, 2059
XceI RCATGY 2 cut(s) 1906, 2177
XhoI CTCGAG 1 cut(s) 1985
XmaI CCCGGG 1 cut(s) 1188
XmnI GAANNNNTTC 1 cut(s) 2099
XspI CTAG 9 cut(s) 339, 507, 1073, 1385, 1451, 1620, 1643, 1841, 2060
ZrmI AGTACT 2 cut(s) 1346, 1402
Zsp2I ATGCAT 1 cut(s) 980
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.