pycom05g02690

Programmed cell death protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0011088
Physical Location & Seq
Reverse (-)
3184114 .. 3185843
1730 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g02690.3

Sequence Viewer

Length: 1230 bp
ATGGACTTCAGTGATGGGTTTGTATCAAAGGAGCATCGGGAGCTTCACCGATCTGCTTCAGAAAGTGCAGATCCATTGTCTGCATCCCCATTGCCAGTTTCTGCAAGGTCCCCAAAGTCCCCCAAATCTTCAAAGTCCCCAAAGTCTCCAAAGTCTCCAAAGATTCAGGGGAAGCATGGAAAAGGAAGTCCACTTAAGCATGATAGACATTCACATTCTGCAGTTGATGGGCGTCCTAAAAAGGGTGGTTCTGGGGGTAAAGGCACCTGGGGAGGGTTACTTGATACAGATGACAATTACACTGCTGATCCGAATGACCCAAACTTCAATAGTAGTGAGGAATGTGAAAATTCCGATGCTAGAAAAGAGAGGGTCGATTTTGAGGAGTACAAAAAGAAAGCTACAATAATAGTGGAGGAATACTTTGCTACTGACGATATTACCTCGACTGCAAATGAACTTGGAGAGCTTGATAGGCCTACCTACAGCTACTATTTTGTAAAGAAGCTTGTCTCTAAGGCGATGGATAGGCATGATAAAGAAAAAGAAATGGCTGCTGTTCTTTTATCTGCACTATATGCTGACTACATTGACCCTCCACAAGTTTACAAGGGATTCTGCAAATTGGTAGAATCTGCGGATGACTTCATTGTGGATATACCTGATACGGTTGATGTTCTTGCTCTGTTCATTGCCCGAGCTGTGGTTGATGACATACTTCCTCCTGCATTCTTGAAGAAACAAATGAACTATTTACCCAAAGATTCGAAAGGGATTGAAGTATTGAAAAGAGCTGAAAAGGGCTACTTAGCAGCCCCGCTCCATGCAGAAATCATTGAGCGGCGATGGGGAGGTAGCAAGAAAATGACTGTGGAGGATGTCAAAGCTAAGATTAATGATTTGTTGAGAGAGTATGTAGTGAGTGGTGACAAGACAGAGGCTTGTAGATGCATCAAGGATTTGAAAGTTCCATTTTTTCACCATGAAATAGTTAAACGAGCTCTTGTAATGGCAATGGAAAGACGTCAAGCTGAAGGCCATCTACTAAATTTGCTGAAAGAAGCTGCTGAAGAAGGTTTAATAAACTCCAGTCAAGTATCAAAAGGCTTCGGTAGGATGATTGACTATGTTGACGACTTGTCACTCGACATACCAAATGCACGGGGTATATTGCGGTCATTGATCGATCCAAGGCAGCATCAGAGGGCTGGTTGTGTGCTTCATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05205 ko05206 map05205 map05206
Pfam Domains
Protein Families
MA3

Protein Analysis

410

Amino Acids

45.61

Weight (kDa)

6.69

Isoelectric Point (pI)

39.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22730
fragaria_vesca FvH4_2g12790
malus_domestica MD05G1036500.v1.1 MD10G1038400.v1.1
prunus_persica Prupe.8G044800_v2.0.a1
pyrus_communis pycom05g02690 pycom10g02640 pycom10g02760
rosa_chinensis RchiOBHm_Chr6g0273671
rosa_laevigata RLG00000013603
rosa_multiflora Rmu_sc0002231.1_g000021
rosa_roxburghii Rroxscaffold_7G00195170
rosa_rugosa Rorug06G0076800 Rorug06G0076900 Rorug06G0077000
rosa_samantha Rh6AG191400 Rh6BG195400 Rh6CG194900 Rh6DG186800
rosa_wichuraiana Rw6G016750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1027
AccB1I GGYRCC 1 cut(s) 263
AccBSI CCGCTC 2 cut(s) 820, 841
AciI CCGC 4 cut(s) 638, 818, 841, 1174
AclWI GGATC 3 cut(s) 65, 302, 1181
AcsI RAATTY 2 cut(s) 349, 1048
AcuI CTGAAG 3 cut(s) 42, 1053, 1089
AcyI GRCGYC 2 cut(s) 232, 1024
AfaI GTAC 1 cut(s) 389
AfiI CCNNNNNNNGG 3 cut(s) 242, 273, 703
AflII CTTAAG 1 cut(s) 194
AgsI TTSAA 6 cut(s) 132, 328, 736, 779, 787, 964
AhdI GACNNNNNGTC 1 cut(s) 1138
AjnI CCWGG 1 cut(s) 266
Alw21I GWGCWC 1 cut(s) 1003
Alw26I GTCTC 3 cut(s) 150, 159, 517
AlwI GGATC 3 cut(s) 65, 302, 1181
AlwNI CAGNNNCTG 1 cut(s) 101
Ama87I CYCGRG 1 cut(s) 696
AoxI GGCC 2 cut(s) 476, 1036
ApeKI GCWGC 4 cut(s) 554, 812, 1064, 1195
ApoI RAATTY 2 cut(s) 349, 1048
AseI ATTAAT 1 cut(s) 894
AspS9I GGNCC 1 cut(s) 108
AsuHPI GGTGA 3 cut(s) 38, 938, 971
AsuII TTCGAA 1 cut(s) 767
AvaI CYCGRG 1 cut(s) 696
AvaII GGWCC 1 cut(s) 108
BanI GGYRCC 1 cut(s) 263
BanII GRGCYC 1 cut(s) 1003
BarI GAAGNNNNNNTAC 2 cut(s) 1026, 1058
Bbv12I GWGCWC 1 cut(s) 1003
BbvI GCAGC 4 cut(s) 541, 824, 1051, 1207
BccI CCATC 5 cut(s) 8, 221, 517, 840, 1047
BciT130I CCWGG 1 cut(s) 268
BcoDI GTCTC 3 cut(s) 150, 159, 517
BfaI CTAG 1 cut(s) 360
BfmI CTRYAG 2 cut(s) 219, 484
BfrI CTTAAG 1 cut(s) 194
BisI GCNGC 5 cut(s) 555, 813, 842, 1065, 1196
BlsI GCNGC 5 cut(s) 556, 814, 843, 1066, 1197
Bme1390I CCNGG 1 cut(s) 268
Bme18I GGWCC 1 cut(s) 108
BmeRI GACNNNNNGTC 1 cut(s) 1138
BmeT110I CYCGRG 1 cut(s) 696
BmgT120I GGNCC 1 cut(s) 108
BmiI GGNNCC 2 cut(s) 110, 265
BmrFI CCNGG 1 cut(s) 268
BmsI GCATC 6 cut(s) 43, 92, 346, 938, 960, 1207
BpmI CTGGAG 1 cut(s) 1072
Bpu14I TTCGAA 1 cut(s) 767
Bsa29I ATCGAT 1 cut(s) 1185
BsaHI GRCGYC 2 cut(s) 232, 1024
BsaJI CCNNGG 2 cut(s) 267, 1190
Bsc4I CCNNNNNNNGG 3 cut(s) 242, 273, 703
Bse1I ACTGG 2 cut(s) 95, 1089
Bse3DI GCAATG 3 cut(s) 89, 690, 1020
BseBI CCWGG 1 cut(s) 268
BseCI ATCGAT 1 cut(s) 1185
BseDI CCNNGG 2 cut(s) 267, 1190
BseGI GGATG 4 cut(s) 83, 646, 883, 1122
BseLI CCNNNNNNNGG 3 cut(s) 242, 273, 703
BseMI GCAATG 3 cut(s) 89, 690, 1020
BseNI ACTGG 2 cut(s) 95, 1089
BseRI GAGGAG 1 cut(s) 398
BseXI GCAGC 4 cut(s) 541, 824, 1051, 1207
BsgI GTGCAG 2 cut(s) 87, 555
BshFI GGCC 2 cut(s) 478, 1038
BshNI GGYRCC 1 cut(s) 263
BshVI ATCGAT 1 cut(s) 1185
BsiHKAI GWGCWC 1 cut(s) 1003
BsiHKCI CYCGRG 1 cut(s) 696
BslFI GGGAC 3 cut(s) 94, 103, 121
BslI CCNNNNNNNGG 3 cut(s) 242, 273, 703
BsmAI GTCTC 3 cut(s) 150, 159, 517
BsmFI GGGAC 3 cut(s) 94, 103, 121
BsmI GAATGC 1 cut(s) 728
BsnI GGCC 2 cut(s) 478, 1038
BsoBI CYCGRG 1 cut(s) 696
Bsp119I TTCGAA 1 cut(s) 767
Bsp1286I GDGCHC 1 cut(s) 1003
Bsp143I GATC 5 cut(s) 50, 70, 307, 1182, 1186
BspACI CCGC 4 cut(s) 638, 818, 841, 1174
BspANI GGCC 2 cut(s) 478, 1038
BspDI ATCGAT 1 cut(s) 1185
BspLI GGNNCC 2 cut(s) 110, 265
BspMAI CTGCAG 1 cut(s) 223
BspPI GGATC 3 cut(s) 65, 302, 1181
BspT104I TTCGAA 1 cut(s) 767
BspT107I GGYRCC 1 cut(s) 263
BspTI CTTAAG 1 cut(s) 194
BsrBI CCGCTC 2 cut(s) 820, 841
BsrDI GCAATG 3 cut(s) 89, 690, 1020
BsrI ACTGG 2 cut(s) 95, 1089
BssECI CCNNGG 2 cut(s) 267, 1190
BssMI GATC 5 cut(s) 50, 70, 307, 1182, 1186
BssNI GRCGYC 2 cut(s) 232, 1024
BssT1I CCWWGG 1 cut(s) 1190
Bst2UI CCWGG 1 cut(s) 268
Bst4CI ACNGT 2 cut(s) 670, 871
BstACI GRCGYC 2 cut(s) 232, 1024
BstAFI CTTAAG 1 cut(s) 194
BstAPI GCANNNNNTGC 1 cut(s) 578
BstBI TTCGAA 1 cut(s) 767
BstDEI CTNAG 3 cut(s) 516, 808, 888
BstF5I GGATG 4 cut(s) 83, 646, 883, 1122
BstKTI GATC 5 cut(s) 53, 73, 310, 1185, 1189
BstMAI GTCTC 3 cut(s) 150, 159, 517
BstMBI GATC 5 cut(s) 50, 70, 307, 1182, 1186
BstMWI GCNNNNNNNGC 3 cut(s) 40, 475, 578
BstNI CCWGG 1 cut(s) 268
BstSCI CCNGG 1 cut(s) 266
BstSFI CTRYAG 2 cut(s) 219, 484
BstV1I GCAGC 4 cut(s) 541, 824, 1051, 1207
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
Bsu15I ATCGAT 1 cut(s) 1185
BsuRI GGCC 2 cut(s) 478, 1038
BsuTUI ATCGAT 1 cut(s) 1185
BtgZI GCGATG 2 cut(s) 536, 859
BtsCI GGATG 4 cut(s) 83, 646, 883, 1122
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 2 cut(s) 16, 300
CaiI CAGNNNCTG 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 108
ClaI ATCGAT 1 cut(s) 1185
CseI GACGC 1 cut(s) 221
Csp6I GTAC 1 cut(s) 388
CspCI CAANNNNNGTGG 2 cut(s) 393, 428
CviAII CATG 5 cut(s) 176, 200, 533, 824, 983
CviQI GTAC 1 cut(s) 388
DdeI CTNAG 3 cut(s) 516, 808, 888
DpnI GATC 5 cut(s) 52, 72, 309, 1184, 1188
DpnII GATC 5 cut(s) 50, 70, 307, 1182, 1186
DriI GACNNNNNGTC 1 cut(s) 1138
Eam1105I GACNNNNNGTC 1 cut(s) 1138
Ecl136II GAGCTC 1 cut(s) 1001
Eco130I CCWWGG 1 cut(s) 1190
Eco147I AGGCCT 1 cut(s) 478
Eco24I GRGCYC 1 cut(s) 1003
Eco47I GGWCC 1 cut(s) 108
Eco53kI GAGCTC 1 cut(s) 1001
Eco57I CTGAAG 3 cut(s) 42, 1053, 1089
Eco88I CYCGRG 1 cut(s) 696
EcoICRI GAGCTC 1 cut(s) 1001
EcoO109I RGGNCCY 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 266
EcoT14I CCWWGG 1 cut(s) 1190
EcoT22I ATGCAT 1 cut(s) 953
EcoT38I GRGCYC 1 cut(s) 1003
ErhI CCWWGG 1 cut(s) 1190
FaeI CATG 5 cut(s) 179, 203, 536, 827, 986
FalI AAGNNNNNCTT 2 cut(s) 791, 823
FaqI GGGAC 3 cut(s) 94, 103, 121
FatI CATG 5 cut(s) 175, 199, 532, 823, 982
FauI CCCGC 1 cut(s) 825
Fnu4HI GCNGC 5 cut(s) 555, 813, 842, 1065, 1196
FokI GGATG 4 cut(s) 70, 653, 890, 1129
FriOI GRGCYC 1 cut(s) 1003
Fsp4HI GCNGC 5 cut(s) 555, 813, 842, 1065, 1196
FspBI CTAG 1 cut(s) 360
GluI GCNGC 5 cut(s) 555, 813, 842, 1065, 1196
GsuI CTGGAG 1 cut(s) 1072
HaeIII GGCC 2 cut(s) 478, 1038
HgaI GACGC 1 cut(s) 221
Hin1I GRCGYC 2 cut(s) 232, 1024
Hin1II CATG 5 cut(s) 179, 203, 536, 827, 986
HincII GTYRAC 1 cut(s) 1132
HindII GTYRAC 1 cut(s) 1132
HindIII AAGCTT 1 cut(s) 506
HinfI GANTC 4 cut(s) 163, 615, 632, 764
HphI GGTGA 3 cut(s) 38, 938, 971
Hpy166II GTNNAC 3 cut(s) 191, 607, 1132
Hpy188I TCNGA 4 cut(s) 61, 312, 355, 1203
Hpy188III TCNNGA 2 cut(s) 38, 733
Hpy8I GTNNAC 3 cut(s) 191, 607, 1132
HpyAV CCTTC 2 cut(s) 1028, 1067
HpyCH4III ACNGT 2 cut(s) 670, 871
HpyCH4IV ACGT 1 cut(s) 1024
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 475, 578
HpyF3I CTNAG 3 cut(s) 516, 808, 888
HpySE526I ACGT 1 cut(s) 1024
Hsp92I GRCGYC 2 cut(s) 232, 1024
Hsp92II CATG 5 cut(s) 179, 203, 536, 827, 986
Kzo9I GATC 5 cut(s) 50, 70, 307, 1182, 1186
LmnI GCTCC 3 cut(s) 31, 40, 825
LpnPI CCDG 9 cut(s) 108, 152, 237, 253, 280, 675, 738, 1102, 1194
Lsp1109I GCAGC 4 cut(s) 541, 824, 1051, 1207
LweI GCATC 6 cut(s) 43, 92, 346, 938, 960, 1207
MaeI CTAG 1 cut(s) 360
MaeII ACGT 1 cut(s) 1024
MaeIII GTNAC 3 cut(s) 276, 926, 1140
MalI GATC 5 cut(s) 52, 72, 309, 1184, 1188
MbiI CCGCTC 2 cut(s) 820, 841
MboI GATC 5 cut(s) 50, 70, 307, 1182, 1186
MboII GAAGA 3 cut(s) 120, 748, 1082
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 1003
MluCI AATT 4 cut(s) 295, 349, 623, 1048
Mph1103I ATGCAT 1 cut(s) 953
MseI TTAA 4 cut(s) 195, 894, 993, 1079
MspCI CTTAAG 1 cut(s) 194
MspR9I CCNGG 1 cut(s) 268
Mva1269I GAATGC 1 cut(s) 728
MvaI CCWGG 1 cut(s) 268
MwoI GCNNNNNNNGC 3 cut(s) 40, 475, 578
NdeII GATC 5 cut(s) 50, 70, 307, 1182, 1186
NlaIII CATG 5 cut(s) 179, 203, 536, 827, 986
NlaIV GGNNCC 2 cut(s) 110, 265
NmuCI GTSAC 2 cut(s) 926, 1140
NsiI ATGCAT 1 cut(s) 953
NspV TTCGAA 1 cut(s) 767
PceI AGGCCT 1 cut(s) 478
PctI GAATGC 1 cut(s) 728
PfeI GAWTC 4 cut(s) 163, 615, 632, 764
PkrI GCNGC 5 cut(s) 556, 814, 843, 1066, 1197
PpuMI RGGWCCY 1 cut(s) 108
PshBI ATTAAT 1 cut(s) 894
Psp124BI GAGCTC 1 cut(s) 1003
Psp5II RGGWCCY 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 266
PspGI CCWGG 1 cut(s) 266
PspN4I GGNNCC 2 cut(s) 110, 265
PspPI GGNCC 1 cut(s) 108
PspPPI RGGWCCY 1 cut(s) 108
PstI CTGCAG 1 cut(s) 223
PstNI CAGNNNCTG 1 cut(s) 101
PsuI RGATCY 1 cut(s) 70
RsaI GTAC 1 cut(s) 389
RsaNI GTAC 1 cut(s) 388
SacI GAGCTC 1 cut(s) 1003
SaqAI TTAA 4 cut(s) 195, 894, 993, 1079
SatI GCNGC 5 cut(s) 555, 813, 842, 1065, 1196
Sau3AI GATC 5 cut(s) 50, 70, 307, 1182, 1186
Sau96I GGNCC 1 cut(s) 108
ScrFI CCNGG 1 cut(s) 268
SduI GDGCHC 1 cut(s) 1003
SfaNI GCATC 6 cut(s) 43, 92, 346, 938, 960, 1207
SfcI CTRYAG 2 cut(s) 219, 484
SfuI TTCGAA 1 cut(s) 767
SinI GGWCC 1 cut(s) 108
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 4 cut(s) 295, 349, 623, 1048
SseBI AGGCCT 1 cut(s) 478
SsiI CCGC 4 cut(s) 638, 818, 841, 1174
SspMI CTAG 1 cut(s) 360
SstI GAGCTC 1 cut(s) 1003
StuI AGGCCT 1 cut(s) 478
StyD4I CCNGG 1 cut(s) 266
StyI CCWWGG 1 cut(s) 1190
TaaI ACNGT 2 cut(s) 670, 871
TaiI ACGT 1 cut(s) 1027
TaqI TCGA 5 cut(s) 375, 446, 767, 1146, 1185
TasI AATT 4 cut(s) 295, 349, 623, 1048
TatI WGTACW 1 cut(s) 387
TauI GCSGC 1 cut(s) 844
TfiI GAWTC 4 cut(s) 163, 615, 632, 764
Tru1I TTAA 4 cut(s) 195, 894, 993, 1079
Tru9I TTAA 4 cut(s) 195, 894, 993, 1079
TscAI CASTG 2 cut(s) 16, 307
TseFI GTSAC 2 cut(s) 926, 1140
TseI GCWGC 4 cut(s) 554, 812, 1064, 1195
Tsp45I GTSAC 2 cut(s) 926, 1140
TspDTI ATGAA 6 cut(s) 471, 637, 679, 761, 999, 1211
TspRI CASTG 2 cut(s) 16, 307
Vha464I CTTAAG 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 108
VspI ATTAAT 1 cut(s) 894
XapI RAATTY 2 cut(s) 349, 1048
XspI CTAG 1 cut(s) 360
ZraI GACGTC 1 cut(s) 1025
Zsp2I ATGCAT 1 cut(s) 953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.