Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0011088

Physical Location & Seq

Genomic Coordinates Reverse (-)

5009684 .. 5011106

Gene Structure 1423 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1038400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGAACTATTTACCTACAGATTCAAAAGGGATTGAAGTATTGACAAGAGCTGAAAAGGGCTACTTAGCAGCCCCGCTCCATGCAGAAATCATTGAGCAGCGATGGGGAGGTAGCAAGAAAATGACTCTGGAGGATGTCAAAGCTAAGATAAATGATTTGTTGACAGAGTATGTAGTGAGTGGTGACAAGAAAGAGGCGTGCAGATGCATCAAGGATTTGAAAGTTCCCTTTTTTCACCATGAAATAGTTAAACGAGCTCTAGTAATGGCAATGGAGAGGCGTCAAGCTGAAGGCCAGCTACTAGATTTGCTGAAAGAAGCTGTTGAAGAAGGTTTAACAAACTCAAGTCAAGTATCAAAAGGCTTCGGTAGGGTGATTGACTATGTTGACGACTTATCACTCGACATACCAATACCAAATGCACGAGATAGTGTTGCTAGAGTTTTCAAGACGAAGGCTCAATCTATTATTCAAGAGTTCTTATCTGGAGATATCTCAGAAGTAAACAGTTGTCTAGAGTCTGAGAATAGTACTTGTTCACTTGAGCTGAATGCTATCTTTGTTAAAAGATTGATAACTCTAGCAATGGATCGCAAGAACAGAGAGAAGGAAATGACATCCGTCTTACTGTCATCCTTGTGTTTTCCAGCTGAAGATGTAGTAAATGGGTTTGTAATGTTGATAGAATCTGCAGATGACACAGCTCTGGATAATCCAGTAGTTGTCGAAGATCTTGCAATGTTTCTCGCTAGATCTGTGTCAATTGGGAGCAAGGTCCTTAAAATGGCCAAGTCATTGCTAAAGGCTCGGCTTTCTGGGGAGCGGATATTAAGGTGTTGGGGTGGTGGTGGCAGACCTGGATGGGCAGTTGAGGATGTGAAGGACAAGATTGGGAAGCTGCCAGAAGAGTTCGAGTCGGGAGGGGATGTAAGAGAGGCTTGCCGCTGCATGGAGGAGTTAGGCATGCCATTTTTCAACCATGAGGTTGTCAAAAAAGCTCTGATGACGATTATGGAAAAGAAGAATGAGAGACTTTGGACTTTGCTGGAGGTATGTTTTGGCTCTGGACTCATCACAATGAACCAAATGGCAAAGGGGTTTGGGAGAGTTGCAGAGTCTCTAGATGATTTGACTTTGGATGTTCCTGATGCCCAGAAACAATTTACAAATTACGTTGAACGAGCAAAGAATGCAGGGTGGTTGGATTCCTCATTTTGTTTCAGCAAATTAGGACACAGTACTGAGAATGGCACTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05205 ko05206 map05205 map05206

Pfam Domains

Protein Families

MA3

Protein Analysis

420

Amino Acids

46.57

Weight (kDa)

5.39

Isoelectric Point (pI)

40.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MA3	PF02847	47 - 149	4.4e-25	MA3 domain
MA3	PF02847	149 - 254	3.6e-15	MA3 domain
MA3	PF02847	294 - 402	1.9e-27	MA3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22730
fragaria_vesca	FvH4_2g12790
malus_domestica	MD05G1036500.v1.1 MD10G1038400.v1.1
prunus_persica	Prupe.8G044800_v2.0.a1
pyrus_communis	pycom05g02690 pycom10g02640 pycom10g02760
rosa_chinensis	RchiOBHm_Chr6g0273671
rosa_laevigata	RLG00000013603
rosa_multiflora	Rmu_sc0002231.1_g000021
rosa_roxburghii	Rroxscaffold_7G00195170
rosa_rugosa	Rorug06G0076800 Rorug06G0076900 Rorug06G0077000
rosa_samantha	Rh6AG191400 Rh6BG195400 Rh6CG194900 Rh6DG186800
rosa_wichuraiana	Rw6G016750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	76, 823
AciI	CCGC	3 cut(s)	74, 823, 943
AclWI	GGATC	1 cut(s)	597
AcoI	YGGCCR	1 cut(s)	786
AcuI	CTGAAG	2 cut(s)	309, 672
AcyI	GRCGYC	1 cut(s)	280
AfaI	GTAC	2 cut(s)	532, 1240
AfiI	CCNNNNNNNGG	2 cut(s)	784, 949
AgsI	TTSAA	8 cut(s)	24, 35, 220, 326, 448, 473, 976, 1178
AjnI	CCWGG	1 cut(s)	856
Alw21I	GWGCWC	1 cut(s)	259
Alw26I	GTCTC	2 cut(s)	1024, 1122
AlwI	GGATC	1 cut(s)	597
AoxI	GGCC	2 cut(s)	292, 786
ApeKI	GCWGC	4 cut(s)	68, 97, 898, 945
AspS9I	GGNCC	1 cut(s)	775
AsuHPI	GGTGA	3 cut(s)	194, 227, 385
AvaII	GGWCC	1 cut(s)	775
BalI	TGGCCA	1 cut(s)	788
BanII	GRGCYC	1 cut(s)	259
BarI	GAAGNNNNNNTAC	2 cut(s)	282, 314
BauI	CACGAG	1 cut(s)	423
Bbv12I	GWGCWC	1 cut(s)	259
BbvI	GCAGC	4 cut(s)	80, 109, 885, 932
BccI	CCATC	2 cut(s)	96, 855
BcgI	CGANNNNNNTGC	2 cut(s)	716, 750
BciT130I	CCWGG	1 cut(s)	858
BcoDI	GTCTC	2 cut(s)	1024, 1122
BfaI	CTAG	7 cut(s)	260, 302, 438, 515, 581, 750, 1121
BfmI	CTRYAG	2 cut(s)	15, 690
BglII	AGATCT	2 cut(s)	730, 752
BisI	GCNGC	5 cut(s)	69, 98, 899, 943, 946
BlsI	GCNGC	5 cut(s)	70, 99, 900, 944, 947
BmcAI	AGTACT	2 cut(s)	532, 1240
Bme1390I	CCNGG	1 cut(s)	858
Bme18I	GGWCC	1 cut(s)	775
BmgT120I	GGNCC	1 cut(s)	775
BmrFI	CCNGG	1 cut(s)	858
BmsI	GCATC	3 cut(s)	194, 216, 1138
BoxI	GACNNNNGTC	1 cut(s)	620
BpmI	CTGGAG	3 cut(s)	149, 507, 1067
BpuEI	CTTGAG	2 cut(s)	328, 563
BsaHI	GRCGYC	1 cut(s)	280
BsaXI	ACNNNNNCTCC	2 cut(s)	912, 942
Bsc4I	CCNNNNNNNGG	2 cut(s)	784, 949
Bse1I	ACTGG	2 cut(s)	716, 1258
Bse3DI	GCAATG	4 cut(s)	276, 591, 744, 794
BseBI	CCWGG	1 cut(s)	858
BseGI	GGATG	7 cut(s)	139, 617, 632, 866, 880, 931, 1144
BseLI	CCNNNNNNNGG	2 cut(s)	784, 949
BseMI	GCAATG	4 cut(s)	276, 591, 744, 794
BseMII	CTCAG	3 cut(s)	510, 513, 1233
BseNI	ACTGG	2 cut(s)	716, 1258
BseRI	GAGGAG	1 cut(s)	968
BseXI	GCAGC	4 cut(s)	80, 109, 885, 932
BsgI	GTGCAG	1 cut(s)	220
BshFI	GGCC	2 cut(s)	294, 788
BsiHKAI	GWGCWC	1 cut(s)	259
BslI	CCNNNNNNNGG	2 cut(s)	784, 949
BsmAI	GTCTC	2 cut(s)	1024, 1122
BsmI	GAATGC	2 cut(s)	556, 1195
BsnI	GGCC	2 cut(s)	294, 788
Bsp1286I	GDGCHC	1 cut(s)	259
Bsp143I	GATC	3 cut(s)	589, 730, 752
BspACI	CCGC	3 cut(s)	74, 823, 943
BspANI	GGCC	2 cut(s)	294, 788
BspCNI	CTCAG	3 cut(s)	509, 514, 1234
BspMAI	CTGCAG	1 cut(s)	694
BspPI	GGATC	1 cut(s)	597
BsrBI	CCGCTC	2 cut(s)	76, 823
BsrDI	GCAATG	4 cut(s)	276, 591, 744, 794
BsrI	ACTGG	2 cut(s)	716, 1258
BssMI	GATC	3 cut(s)	589, 730, 752
BssNI	GRCGYC	1 cut(s)	280
BssSI	CACGAG	1 cut(s)	423
Bst2BI	CACGAG	1 cut(s)	423
Bst2UI	CCWGG	1 cut(s)	858
Bst4CI	ACNGT	3 cut(s)	509, 630, 1238
Bst6I	CTCTTC	1 cut(s)	900
BstACI	GRCGYC	1 cut(s)	280
BstAPI	GCANNNNNTGC	1 cut(s)	1190
BstC8I	GCNNGC	4 cut(s)	199, 296, 940, 965
BstDEI	CTNAG	5 cut(s)	64, 144, 496, 522, 1242
BstF5I	GGATG	7 cut(s)	139, 617, 632, 866, 880, 931, 1144
BstKTI	GATC	3 cut(s)	592, 733, 755
BstMAI	GTCTC	2 cut(s)	1024, 1122
BstMBI	GATC	3 cut(s)	589, 730, 752
BstMWI	GCNNNNNNNGC	1 cut(s)	1190
BstNI	CCWGG	1 cut(s)	858
BstNSI	RCATGY	1 cut(s)	967
BstPAI	GACNNNNGTC	1 cut(s)	620
BstSCI	CCNGG	1 cut(s)	856
BstSFI	CTRYAG	2 cut(s)	15, 690
BstV1I	GCAGC	4 cut(s)	80, 109, 885, 932
BstX2I	RGATCY	2 cut(s)	730, 752
BstYI	RGATCY	2 cut(s)	730, 752
BsuRI	GGCC	2 cut(s)	294, 788
BtgZI	GCGATG	1 cut(s)	115
BtsCI	GGATG	7 cut(s)	139, 617, 632, 866, 880, 931, 1144
BtsIMutI	CAGTG	1 cut(s)	1251
Cac8I	GCNNGC	4 cut(s)	199, 296, 940, 965
Cfr13I	GGNCC	1 cut(s)	775
CseI	GACGC	1 cut(s)	269
Csp6I	GTAC	2 cut(s)	531, 1239
CviAII	CATG	5 cut(s)	80, 239, 949, 964, 980
CviQI	GTAC	2 cut(s)	531, 1239
DdeI	CTNAG	5 cut(s)	64, 144, 496, 522, 1242
DpnI	GATC	3 cut(s)	591, 732, 754
DpnII	GATC	3 cut(s)	589, 730, 752
EaeI	YGGCCR	1 cut(s)	786
Eam1104I	CTCTTC	1 cut(s)	900
EarI	CTCTTC	1 cut(s)	900
Ecl136II	GAGCTC	1 cut(s)	257
Eco24I	GRGCYC	1 cut(s)	259
Eco32I	GATATC	1 cut(s)	493
Eco47I	GGWCC	1 cut(s)	775
Eco53kI	GAGCTC	1 cut(s)	257
Eco57I	CTGAAG	2 cut(s)	309, 672
EcoICRI	GAGCTC	1 cut(s)	257
EcoO109I	RGGNCCY	1 cut(s)	775
EcoRII	CCWGG	1 cut(s)	856
EcoRV	GATATC	1 cut(s)	493
EcoT22I	ATGCAT	1 cut(s)	209
EcoT38I	GRGCYC	1 cut(s)	259
FaeI	CATG	5 cut(s)	83, 242, 952, 967, 983
FalI	AAGNNNNNCTT	4 cut(s)	47, 79, 922, 954
FatI	CATG	5 cut(s)	79, 238, 948, 963, 979
FauI	CCCGC	1 cut(s)	81
Fnu4HI	GCNGC	5 cut(s)	69, 98, 899, 943, 946
FokI	GGATG	7 cut(s)	146, 604, 619, 873, 887, 938, 1151
FriOI	GRGCYC	1 cut(s)	259
Fsp4HI	GCNGC	5 cut(s)	69, 98, 899, 943, 946
FspBI	CTAG	7 cut(s)	260, 302, 438, 515, 581, 750, 1121
GluI	GCNGC	5 cut(s)	69, 98, 899, 943, 946
GsuI	CTGGAG	3 cut(s)	149, 507, 1067
HaeIII	GGCC	2 cut(s)	294, 788
HgaI	GACGC	1 cut(s)	269
Hin1I	GRCGYC	1 cut(s)	280
Hin1II	CATG	5 cut(s)	83, 242, 952, 967, 983
HincII	GTYRAC	2 cut(s)	162, 388
HindII	GTYRAC	2 cut(s)	162, 388
HinfI	GANTC	8 cut(s)	20, 124, 518, 686, 914, 1068, 1115, 1205
HphI	GGTGA	3 cut(s)	194, 227, 385
Hpy166II	GTNNAC	4 cut(s)	162, 388, 505, 539
Hpy188I	TCNGA	3 cut(s)	499, 523, 1002
Hpy8I	GTNNAC	4 cut(s)	162, 388, 505, 539
HpyAV	CCTTC	5 cut(s)	284, 323, 448, 601, 874
HpyCH4III	ACNGT	3 cut(s)	509, 630, 1238
HpyCH4IV	ACGT	1 cut(s)	1173
HpyCH4V	TGCA	9 cut(s)	83, 201, 207, 422, 692, 737, 948, 1112, 1193
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1190
HpyF3I	CTNAG	5 cut(s)	64, 144, 496, 522, 1242
HpySE526I	ACGT	1 cut(s)	1173
Hsp92I	GRCGYC	1 cut(s)	280
Hsp92II	CATG	5 cut(s)	83, 242, 952, 967, 983
Kzo9I	GATC	3 cut(s)	589, 730, 752
LmnI	GCTCC	3 cut(s)	81, 768, 820
Lsp1109I	GCAGC	4 cut(s)	80, 109, 885, 932
LweI	GCATC	3 cut(s)	194, 216, 1138
MaeI	CTAG	7 cut(s)	260, 302, 438, 515, 581, 750, 1121
MaeII	ACGT	1 cut(s)	1173
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	3 cut(s)	591, 732, 754
MbiI	CCGCTC	2 cut(s)	76, 823
MboI	GATC	3 cut(s)	589, 730, 752
MboII	GAAGA	5 cut(s)	338, 665, 740, 917, 1033
MfeI	CAATTG	1 cut(s)	762
MflI	RGATCY	2 cut(s)	730, 752
MhlI	GDGCHC	1 cut(s)	259
MlsI	TGGCCA	1 cut(s)	788
MluCI	AATT	4 cut(s)	762, 1160, 1168, 1226
MluNI	TGGCCA	1 cut(s)	788
MlyI	GAGTC	5 cut(s)	118, 527, 923, 1062, 1124
MmeI	TCCRAC	1 cut(s)	1182
Mox20I	TGGCCA	1 cut(s)	788
Mph1103I	ATGCAT	1 cut(s)	209
MscI	TGGCCA	1 cut(s)	788
MseI	TTAA	5 cut(s)	249, 335, 564, 780, 830
MslI	CAYNNNNRTG	2 cut(s)	637, 1076
Msp20I	TGGCCA	1 cut(s)	788
MspA1I	CMGCKG	2 cut(s)	650, 945
MspR9I	CCNGG	1 cut(s)	858
MunI	CAATTG	1 cut(s)	762
Mva1269I	GAATGC	2 cut(s)	556, 1195
MvaI	CCWGG	1 cut(s)	858
MwoI	GCNNNNNNNGC	1 cut(s)	1190
NdeII	GATC	3 cut(s)	589, 730, 752
NlaIII	CATG	5 cut(s)	83, 242, 952, 967, 983
NmeAIII	GCCGAG	1 cut(s)	787
NmuCI	GTSAC	1 cut(s)	182
NsiI	ATGCAT	1 cut(s)	209
NspI	RCATGY	1 cut(s)	967
PaeI	GCATGC	1 cut(s)	967
PctI	GAATGC	2 cut(s)	556, 1195
PfeI	GAWTC	3 cut(s)	20, 686, 1205
PkrI	GCNGC	5 cut(s)	70, 99, 900, 944, 947
PleI	GAGTC	5 cut(s)	118, 526, 922, 1062, 1123
PpsI	GAGTC	5 cut(s)	118, 526, 922, 1062, 1123
PpuMI	RGGWCCY	1 cut(s)	775
PshAI	GACNNNNGTC	1 cut(s)	620
Psp124BI	GAGCTC	1 cut(s)	259
Psp5II	RGGWCCY	1 cut(s)	775
Psp6I	CCWGG	1 cut(s)	856
PspGI	CCWGG	1 cut(s)	856
PspPI	GGNCC	1 cut(s)	775
PspPPI	RGGWCCY	1 cut(s)	775
PstI	CTGCAG	1 cut(s)	694
PsuI	RGATCY	2 cut(s)	730, 752
PvuII	CAGCTG	1 cut(s)	650
RsaI	GTAC	2 cut(s)	532, 1240
RsaNI	GTAC	2 cut(s)	531, 1239
RseI	CAYNNNNRTG	2 cut(s)	637, 1076
SacI	GAGCTC	1 cut(s)	259
SaqAI	TTAA	5 cut(s)	249, 335, 564, 780, 830
SatI	GCNGC	5 cut(s)	69, 98, 899, 943, 946
Sau3AI	GATC	3 cut(s)	589, 730, 752
Sau96I	GGNCC	1 cut(s)	775
ScaI	AGTACT	2 cut(s)	532, 1240
SchI	GAGTC	5 cut(s)	118, 527, 923, 1062, 1124
ScrFI	CCNGG	1 cut(s)	858
SduI	GDGCHC	1 cut(s)	259
SfaNI	GCATC	3 cut(s)	194, 216, 1138
SfcI	CTRYAG	2 cut(s)	15, 690
SinI	GGWCC	1 cut(s)	775
SmiMI	CAYNNNNRTG	2 cut(s)	637, 1076
SmlI	CTYRAG	2 cut(s)	343, 542
SmoI	CTYRAG	2 cut(s)	343, 542
SphI	GCATGC	1 cut(s)	967
Sse9I	AATT	4 cut(s)	762, 1160, 1168, 1226
SsiI	CCGC	3 cut(s)	74, 823, 943
SspMI	CTAG	7 cut(s)	260, 302, 438, 515, 581, 750, 1121
SstI	GAGCTC	1 cut(s)	259
StyD4I	CCNGG	1 cut(s)	856
TaaI	ACNGT	3 cut(s)	509, 630, 1238
TaiI	ACGT	1 cut(s)	1176
TaqI	TCGA	3 cut(s)	402, 726, 912
TasI	AATT	4 cut(s)	762, 1160, 1168, 1226
TatI	WGTACW	2 cut(s)	530, 1238
TauI	GCSGC	1 cut(s)	945
TfiI	GAWTC	3 cut(s)	20, 686, 1205
Tru1I	TTAA	5 cut(s)	249, 335, 564, 780, 830
Tru9I	TTAA	5 cut(s)	249, 335, 564, 780, 830
TscAI	CASTG	1 cut(s)	1258
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	4 cut(s)	68, 97, 898, 945
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	3 cut(s)	17, 255, 1094
TspGWI	ACGGA	1 cut(s)	610
TspRI	CASTG	1 cut(s)	1258
VpaK11BI	GGWCC	1 cut(s)	775
XbaI	TCTAGA	2 cut(s)	514, 1120
XceI	RCATGY	1 cut(s)	967
XspI	CTAG	7 cut(s)	260, 302, 438, 515, 581, 750, 1121
ZrmI	AGTACT	2 cut(s)	532, 1240
Zsp2I	ATGCAT	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.