Lignin degradation and detoxification of lignin-derived products
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| UDPGT | PF00201 | 269 - 390 | 2.1e-21 | UDP-glucoronosyl and UDP-glucosyl transferase |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1025 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 484 |
| Acc36I | ACCTGC | 2 cut(s) | 307, 1261 |
| AccB1I | GGYRCC | 1 cut(s) | 748 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1444 |
| AciI | CCGC | 1 cut(s) | 387 |
| AclWI | GGATC | 3 cut(s) | 233, 781, 1254 |
| AcoI | YGGCCR | 3 cut(s) | 58, 384, 1145 |
| AcsI | RAATTY | 5 cut(s) | 197, 275, 399, 587, 1408 |
| AcuI | CTGAAG | 3 cut(s) | 231, 1005, 1284 |
| AdeI | CACNNNGTG | 1 cut(s) | 455 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1444, 1447 |
| AgsI | TTSAA | 9 cut(s) | 20, 302, 595, 814, 828, 1112, 1408, 1427, 1435 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1035, 1067 |
| AleI | CACNNNNGTG | 1 cut(s) | 122 |
| AluBI | AGCT | 9 cut(s) | 25, 215, 310, 633, 654, 674, 786, 892, 1357 |
| AluI | AGCT | 9 cut(s) | 25, 215, 310, 633, 654, 674, 786, 892, 1357 |
| AlwI | GGATC | 3 cut(s) | 233, 781, 1254 |
| AoxI | GGCC | 7 cut(s) | 58, 384, 724, 910, 1015, 1145, 1377 |
| ApoI | RAATTY | 5 cut(s) | 197, 275, 399, 587, 1408 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 473, 505 |
| AspLEI | GCGC | 2 cut(s) | 446, 1076 |
| AspS9I | GGNCC | 3 cut(s) | 725, 1015, 1377 |
| AsuC2I | CCSGG | 1 cut(s) | 1126 |
| AsuHPI | GGTGA | 5 cut(s) | 185, 590, 1162, 1198, 1331 |
| BalI | TGGCCA | 1 cut(s) | 60 |
| BanI | GGYRCC | 1 cut(s) | 748 |
| BanII | GRGCYC | 1 cut(s) | 1039 |
| BauI | CACGAG | 2 cut(s) | 54, 102 |
| BbsI | GAAGAC | 2 cut(s) | 978, 1265 |
| BccI | CCATC | 2 cut(s) | 350, 569 |
| BceAI | ACGGC | 1 cut(s) | 1364 |
| BcnI | CCSGG | 1 cut(s) | 1126 |
| BfaI | CTAG | 4 cut(s) | 572, 665, 896, 1305 |
| BfmI | CTRYAG | 1 cut(s) | 375 |
| BfuAI | ACCTGC | 2 cut(s) | 307, 1261 |
| BisI | GCNGC | 1 cut(s) | 387 |
| BlsI | GCNGC | 1 cut(s) | 388 |
| Bme1390I | CCNGG | 1 cut(s) | 1126 |
| BmgT120I | GGNCC | 3 cut(s) | 725, 1015, 1377 |
| BmiI | GGNNCC | 4 cut(s) | 727, 750, 1038, 1131 |
| BmrFI | CCNGG | 1 cut(s) | 1126 |
| BmsI | GCATC | 3 cut(s) | 104, 617, 876 |
| BpiI | GAAGAC | 2 cut(s) | 978, 1265 |
| BpuEI | CTTGAG | 4 cut(s) | 210, 332, 935, 1076 |
| BpuMI | CCSGG | 1 cut(s) | 1126 |
| BsaAI | YACGTR | 1 cut(s) | 1143 |
| BsaJI | CCNNGG | 5 cut(s) | 368, 404, 418, 1125, 1380 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1444, 1447 |
| Bse118I | RCCGGY | 1 cut(s) | 1147 |
| Bse1I | ACTGG | 2 cut(s) | 557, 980 |
| Bse3DI | GCAATG | 1 cut(s) | 340 |
| BseDI | CCNNGG | 5 cut(s) | 368, 404, 418, 1125, 1380 |
| BseGI | GGATG | 1 cut(s) | 608 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1444, 1447 |
| BseMI | GCAATG | 1 cut(s) | 340 |
| BseMII | CTCAG | 4 cut(s) | 443, 488, 786, 1182 |
| BseNI | ACTGG | 2 cut(s) | 557, 980 |
| BseRI | GAGGAG | 1 cut(s) | 1291 |
| BseYI | CCCAGC | 1 cut(s) | 215 |
| BshFI | GGCC | 7 cut(s) | 60, 386, 726, 912, 1017, 1147, 1379 |
| BshNI | GGYRCC | 1 cut(s) | 748 |
| BsiSI | CCGG | 2 cut(s) | 1125, 1148 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1444, 1447 |
| BsnI | GGCC | 7 cut(s) | 60, 386, 726, 912, 1017, 1147, 1379 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1039 |
| Bsp143I | GATC | 5 cut(s) | 238, 531, 682, 773, 1246 |
| Bsp19I | CCATGG | 1 cut(s) | 418 |
| BspACI | CCGC | 1 cut(s) | 387 |
| BspANI | GGCC | 7 cut(s) | 60, 386, 726, 912, 1017, 1147, 1379 |
| BspCNI | CTCAG | 4 cut(s) | 444, 487, 787, 1183 |
| BspLI | GGNNCC | 4 cut(s) | 727, 750, 1038, 1131 |
| BspMI | ACCTGC | 2 cut(s) | 307, 1261 |
| BspPI | GGATC | 3 cut(s) | 233, 781, 1254 |
| BspT107I | GGYRCC | 1 cut(s) | 748 |
| BsrDI | GCAATG | 1 cut(s) | 340 |
| BsrFI | RCCGGY | 1 cut(s) | 1147 |
| BsrI | ACTGG | 2 cut(s) | 557, 980 |
| BssAI | RCCGGY | 1 cut(s) | 1147 |
| BssECI | CCNNGG | 5 cut(s) | 368, 404, 418, 1125, 1380 |
| BssMI | GATC | 5 cut(s) | 238, 531, 682, 773, 1246 |
| BssSI | CACGAG | 2 cut(s) | 54, 102 |
| BssT1I | CCWWGG | 3 cut(s) | 368, 404, 418 |
| Bst2BI | CACGAG | 2 cut(s) | 54, 102 |
| Bst6I | CTCTTC | 3 cut(s) | 155, 992, 1422 |
| BstBAI | YACGTR | 1 cut(s) | 1143 |
| BstDEI | CTNAG | 5 cut(s) | 452, 474, 795, 1191, 1199 |
| BstDSI | CCRYGG | 2 cut(s) | 418, 1380 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1445 |
| BstF5I | GGATG | 1 cut(s) | 608 |
| BstHHI | GCGC | 2 cut(s) | 446, 1076 |
| BstKTI | GATC | 5 cut(s) | 241, 534, 685, 776, 1249 |
| BstMBI | GATC | 5 cut(s) | 238, 531, 682, 773, 1246 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1073, 1376 |
| BstNSI | RCATGY | 1 cut(s) | 601 |
| BstSCI | CCNGG | 1 cut(s) | 1124 |
| BstSFI | CTRYAG | 1 cut(s) | 375 |
| BstV2I | GAAGAC | 2 cut(s) | 978, 1265 |
| BstX2I | RGATCY | 2 cut(s) | 238, 1246 |
| BstYI | RGATCY | 2 cut(s) | 238, 1246 |
| BsuRI | GGCC | 7 cut(s) | 60, 386, 726, 912, 1017, 1147, 1379 |
| BtgI | CCRYGG | 2 cut(s) | 418, 1380 |
| BtgZI | GCGATG | 1 cut(s) | 1173 |
| BtsCI | GGATG | 1 cut(s) | 608 |
| BtsI | GCAGTG | 2 cut(s) | 1305, 1335 |
| BtsIMutI | CAGTG | 3 cut(s) | 449, 1305, 1335 |
| BveI | ACCTGC | 2 cut(s) | 307, 1261 |
| CfoI | GCGC | 2 cut(s) | 446, 1076 |
| Cfr10I | RCCGGY | 1 cut(s) | 1147 |
| Cfr13I | GGNCC | 3 cut(s) | 725, 1015, 1377 |
| CviAII | CATG | 7 cut(s) | 49, 265, 419, 598, 803, 1061, 1312 |
| DdeI | CTNAG | 5 cut(s) | 452, 474, 795, 1191, 1199 |
| DpnI | GATC | 5 cut(s) | 240, 533, 684, 775, 1248 |
| DpnII | GATC | 5 cut(s) | 238, 531, 682, 773, 1246 |
| DraIII | CACNNNGTG | 1 cut(s) | 455 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 484 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 484 |
| EaeI | YGGCCR | 3 cut(s) | 58, 384, 1145 |
| Eam1104I | CTCTTC | 3 cut(s) | 155, 992, 1422 |
| EarI | CTCTTC | 3 cut(s) | 155, 992, 1422 |
| Eco130I | CCWWGG | 3 cut(s) | 368, 404, 418 |
| Eco147I | AGGCCT | 1 cut(s) | 912 |
| Eco24I | GRGCYC | 1 cut(s) | 1039 |
| Eco57I | CTGAAG | 3 cut(s) | 231, 1005, 1284 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1445 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1015 |
| EcoRI | GAATTC | 2 cut(s) | 399, 587 |
| EcoT14I | CCWWGG | 3 cut(s) | 368, 404, 418 |
| EcoT38I | GRGCYC | 1 cut(s) | 1039 |
| ErhI | CCWWGG | 3 cut(s) | 368, 404, 418 |
| FaeI | CATG | 7 cut(s) | 52, 268, 422, 601, 806, 1064, 1315 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 168, 200 |
| FatI | CATG | 7 cut(s) | 48, 264, 418, 597, 802, 1060, 1311 |
| Fnu4HI | GCNGC | 1 cut(s) | 387 |
| FokI | GGATG | 1 cut(s) | 595 |
| FriOI | GRGCYC | 1 cut(s) | 1039 |
| Fsp4HI | GCNGC | 1 cut(s) | 387 |
| FspBI | CTAG | 4 cut(s) | 572, 665, 896, 1305 |
| GlaI | GCGC | 2 cut(s) | 445, 1075 |
| GluI | GCNGC | 1 cut(s) | 387 |
| GsaI | CCCAGC | 1 cut(s) | 219 |
| HaeIII | GGCC | 7 cut(s) | 60, 386, 726, 912, 1017, 1147, 1379 |
| HapII | CCGG | 2 cut(s) | 1125, 1148 |
| HhaI | GCGC | 2 cut(s) | 446, 1076 |
| Hin1II | CATG | 7 cut(s) | 52, 268, 422, 601, 806, 1064, 1315 |
| Hin6I | GCGC | 2 cut(s) | 444, 1074 |
| HinP1I | GCGC | 2 cut(s) | 444, 1074 |
| HincII | GTYRAC | 1 cut(s) | 649 |
| HindII | GTYRAC | 1 cut(s) | 649 |
| HinfI | GANTC | 8 cut(s) | 423, 494, 500, 581, 824, 1051, 1084, 1308 |
| HpaI | GTTAAC | 1 cut(s) | 649 |
| HpaII | CCGG | 2 cut(s) | 1125, 1148 |
| HphI | GGTGA | 5 cut(s) | 185, 590, 1162, 1198, 1331 |
| Hpy166II | GTNNAC | 1 cut(s) | 649 |
| Hpy188I | TCNGA | 6 cut(s) | 477, 493, 499, 586, 863, 1225 |
| Hpy188III | TCNNGA | 9 cut(s) | 227, 242, 535, 572, 592, 924, 1055, 1405, 1445 |
| Hpy8I | GTNNAC | 1 cut(s) | 649 |
| HpyAV | CCTTC | 7 cut(s) | 26, 703, 980, 1001, 1106, 1382, 1451 |
| HpyCH4IV | ACGT | 1 cut(s) | 1142 |
| HpyCH4V | TGCA | 5 cut(s) | 117, 143, 680, 741, 905 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1073, 1376 |
| HpyF3I | CTNAG | 5 cut(s) | 452, 474, 795, 1191, 1199 |
| HpySE526I | ACGT | 1 cut(s) | 1142 |
| Hsp92II | CATG | 7 cut(s) | 52, 268, 422, 601, 806, 1064, 1315 |
| HspAI | GCGC | 2 cut(s) | 444, 1074 |
| KspAI | GTTAAC | 1 cut(s) | 649 |
| Kzo9I | GATC | 5 cut(s) | 238, 531, 682, 773, 1246 |
| LmnI | GCTCC | 2 cut(s) | 630, 1042 |
| LweI | GCATC | 3 cut(s) | 104, 617, 876 |
| MaeI | CTAG | 4 cut(s) | 572, 665, 896, 1305 |
| MaeII | ACGT | 1 cut(s) | 1142 |
| MaeIII | GTNAC | 4 cut(s) | 124, 1081, 1186, 1300 |
| MalI | GATC | 5 cut(s) | 240, 533, 684, 775, 1248 |
| MboI | GATC | 5 cut(s) | 238, 531, 682, 773, 1246 |
| MflI | RGATCY | 2 cut(s) | 238, 1246 |
| MhlI | GDGCHC | 1 cut(s) | 1039 |
| MlsI | TGGCCA | 1 cut(s) | 60 |
| MluCI | AATT | 8 cut(s) | 197, 275, 399, 551, 587, 900, 1408, 1413 |
| MluNI | TGGCCA | 1 cut(s) | 60 |
| MlyI | GAGTC | 2 cut(s) | 590, 1078 |
| Mox20I | TGGCCA | 1 cut(s) | 60 |
| MscI | TGGCCA | 1 cut(s) | 60 |
| MseI | TTAA | 3 cut(s) | 648, 1350, 1412 |
| MslI | CAYNNNNRTG | 1 cut(s) | 122 |
| Msp20I | TGGCCA | 1 cut(s) | 60 |
| MspI | CCGG | 2 cut(s) | 1125, 1148 |
| MspR9I | CCNGG | 1 cut(s) | 1126 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1073, 1376 |
| NciI | CCSGG | 1 cut(s) | 1126 |
| NcoI | CCATGG | 1 cut(s) | 418 |
| NdeII | GATC | 5 cut(s) | 238, 531, 682, 773, 1246 |
| NlaIII | CATG | 7 cut(s) | 52, 268, 422, 601, 806, 1064, 1315 |
| NlaIV | GGNNCC | 4 cut(s) | 727, 750, 1038, 1131 |
| NmuCI | GTSAC | 4 cut(s) | 124, 1081, 1186, 1300 |
| NspI | RCATGY | 1 cut(s) | 601 |
| OliI | CACNNNNGTG | 1 cut(s) | 122 |
| PceI | AGGCCT | 1 cut(s) | 912 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 485 |
| PfeI | GAWTC | 6 cut(s) | 423, 494, 500, 824, 1051, 1308 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1444 |
| PkrI | GCNGC | 1 cut(s) | 388 |
| PleI | GAGTC | 2 cut(s) | 589, 1078 |
| PpsI | GAGTC | 2 cut(s) | 589, 1078 |
| Ppu21I | YACGTR | 1 cut(s) | 1143 |
| PsiI | TTATAA | 1 cut(s) | 1025 |
| PspFI | CCCAGC | 1 cut(s) | 215 |
| PspN4I | GGNNCC | 4 cut(s) | 727, 750, 1038, 1131 |
| PspPI | GGNCC | 3 cut(s) | 725, 1015, 1377 |
| PsuI | RGATCY | 2 cut(s) | 238, 1246 |
| RseI | CAYNNNNRTG | 1 cut(s) | 122 |
| SaqAI | TTAA | 3 cut(s) | 648, 1350, 1412 |
| SatI | GCNGC | 1 cut(s) | 387 |
| Sau3AI | GATC | 5 cut(s) | 238, 531, 682, 773, 1246 |
| Sau96I | GGNCC | 3 cut(s) | 725, 1015, 1377 |
| SchI | GAGTC | 2 cut(s) | 590, 1078 |
| ScrFI | CCNGG | 1 cut(s) | 1126 |
| SduI | GDGCHC | 1 cut(s) | 1039 |
| SfaNI | GCATC | 3 cut(s) | 104, 617, 876 |
| SfcI | CTRYAG | 1 cut(s) | 375 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 122 |
| SmlI | CTYRAG | 4 cut(s) | 225, 311, 914, 1055 |
| SmoI | CTYRAG | 4 cut(s) | 225, 311, 914, 1055 |
| Sse9I | AATT | 8 cut(s) | 197, 275, 399, 551, 587, 900, 1408, 1413 |
| SseBI | AGGCCT | 1 cut(s) | 912 |
| SsiI | CCGC | 1 cut(s) | 387 |
| SspMI | CTAG | 4 cut(s) | 572, 665, 896, 1305 |
| StuI | AGGCCT | 1 cut(s) | 912 |
| StyD4I | CCNGG | 1 cut(s) | 1124 |
| StyI | CCWWGG | 3 cut(s) | 368, 404, 418 |
| TaiI | ACGT | 1 cut(s) | 1145 |
| TaqI | TCGA | 1 cut(s) | 788 |
| TasI | AATT | 8 cut(s) | 197, 275, 399, 551, 587, 900, 1408, 1413 |
| TauI | GCSGC | 1 cut(s) | 389 |
| TfiI | GAWTC | 6 cut(s) | 423, 494, 500, 824, 1051, 1308 |
| Tru1I | TTAA | 3 cut(s) | 648, 1350, 1412 |
| Tru9I | TTAA | 3 cut(s) | 648, 1350, 1412 |
| TscAI | CASTG | 3 cut(s) | 456, 1305, 1335 |
| TseFI | GTSAC | 4 cut(s) | 124, 1081, 1186, 1300 |
| Tsp45I | GTSAC | 4 cut(s) | 124, 1081, 1186, 1300 |
| TspDTI | ATGAA | 9 cut(s) | 17, 37, 554, 675, 925, 1077, 1227, 1338, 1407 |
| TspGWI | ACGGA | 1 cut(s) | 1019 |
| TspRI | CASTG | 3 cut(s) | 456, 1305, 1335 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1444 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1445 |
| XapI | RAATTY | 5 cut(s) | 197, 275, 399, 587, 1408 |
| XbaI | TCTAGA | 1 cut(s) | 571 |
| XceI | RCATGY | 1 cut(s) | 601 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1140 |
| XspI | CTAG | 4 cut(s) | 572, 665, 896, 1305 |