Rmu_sc0015313.1_g000012

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015313.1
OG0000320
Physical Location & Seq
Forward (+)
18785 .. 19905
1121 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015313.1_g000012.1.cds

Sequence Viewer

Length: 576 bp
atggaattccagcaagtatacagggtgaacataagcggggcttatgaatcaaatttcccagaccagccgactttgttttataattttacagcagattctgtccccgactattatgattacacagcacaagggacaaaggtgaaagtgttgaactataatgaatcggttgaaattgtgttccaagggactaatgtgatggacggttctgtcaatcatccaatgcatatgcatggatatagcttttatgtggttggatatggttttggaaattttgacaatcagactgatcccaaggggtataatttggtagatcctcctaaagtagctacctttggagttcccaaaagaggatggttagcaatcagattcaaagcaactaatcctggagtgtggttttggcattgtcatttctcgagacacttaacttggggtatggacactgcttttatagtgaaaaatgggggcactccggagactagcattcgcgaaccaccaacttacatgcccccatgtattattccattgaattctcgtgtccacagctatggtgaatttattgaagagaaaagagagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

191

Amino Acids

21.92

Weight (kDa)

5.95

Isoelectric Point (pI)

35.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000320)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g12640 FvH4_2g18980 FvH4_2g18990 FvH4_2g40270 FvH4_2g40270 FvH4_4g22740 FvH4_4g22740 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g36460 FvH4_5g36460 FvH4_6g39950 FvH4_6g39970 FvH4_6g39983 FvH4_6g39990
rosa_chinensis RchiOBHm_Chr2g0154481 RchiOBHm_Chr2g0154511 RchiOBHm_Chr4g0428961 RchiOBHm_Chr6g0252431 RchiOBHm_Chr6g0273301 RchiOBHm_Chr6g0273631 RchiOBHm_Chr6g0273651 RchiOBHm_Chr6g0284751 RchiOBHm_Chr6g0284761 RchiOBHm_Chr6g0300491 RchiOBHm_Chr7g0237421 RchiOBHm_Chr7g0238581
rosa_laevigata RLG00000000906 RLG00000001006 RLG00000007110 RLG00000011333 RLG00000012721 RLG00000013605 RLG00000013626 RLG00000020780 RLG00000020782 RLG00000020783 RLG00000020786
rosa_multiflora Rmu_co8321753.1_g000001 Rmu_sc0000239.1_g000020 Rmu_sc0000686.1_g000001 Rmu_sc0000686.1_g000003 Rmu_sc0000686.1_g000005 Rmu_sc0001476.1_g000011 Rmu_sc0002231.1_g000002 Rmu_sc0002231.1_g000016 Rmu_sc0002690.1_g000003 Rmu_sc0002717.1_g000015 Rmu_sc0002923.1_g000026 Rmu_sc0003808.1_g000016 Rmu_sc0006475.1_g000008 Rmu_sc0006475.1_g000012 Rmu_sc0006475.1_g000018 Rmu_sc0014815.1_g000004 Rmu_sc0015313.1_g000012
rosa_roxburghii Rroxscaffold_2G00094270 Rroxscaffold_2G00094290 Rroxscaffold_3G00222950 Rroxscaffold_3G00224250 Rroxscaffold_5G00370630 Rroxscaffold_7G00167740 Rroxscaffold_7G00184410 Rroxscaffold_7G00195190 Rroxscaffold_7G00195460
rosa_rugosa Rorug02G0444600 Rorug04G0231100 Rorug04G0231200 Rorug06G0074000 Rorug06G0076800 Rorug06G0166400 Rorug06G0166500 Rorug06G0166600 Rorug06G0296400 Rorug07G0303000
rosa_samantha Rh2CG494600 Rh2CG494700 Rh2DG530800 Rh2DG530900 Rh2DG531000 Rh4AG287500 Rh4AG403800 Rh4BG293400 Rh4BG415100 Rh4DG290500 Rh6AG191000 Rh6AG191300 Rh6BG192500 Rh6BG194800 Rh6BG195200 Rh6BG279500 Rh6BG279600 Rh6DG183900 Rh6DG186600 Rh6DG274300 Rh6DG274500 Rh6DG409500 Rh7AG460600 Rh7AG468200 Rh7BG430200
rosa_wichuraiana Rw2G041820 Rw2G041830 Rw2G041840 Rw4G024930 Rw6G016470 Rw6G016720 Rw6G016730 Rw6G024020 Rw6G024030 Rw6G035790 Rw7G038130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 81
AasI GACNNNNNNGTC 1 cut(s) 206
AccI GTMKAC 1 cut(s) 18
AccII CGCG 1 cut(s) 486
AccIII TCCGGA 1 cut(s) 469
AciI CCGC 1 cut(s) 36
AclWI GGATC 2 cut(s) 281, 305
AcsI RAATTY 5 cut(s) 5, 52, 268, 526, 551
AfiI CCNNNNNNNGG 1 cut(s) 347
AgsI TTSAA 5 cut(s) 151, 170, 370, 526, 560
AjnI CCWGG 1 cut(s) 382
AluBI AGCT 3 cut(s) 240, 326, 543
AluI AGCT 3 cut(s) 240, 326, 543
Alw26I GTCTC 2 cut(s) 409, 467
AlwI GGATC 2 cut(s) 281, 305
AlwNI CAGNNNCTG 1 cut(s) 98
Ama87I CYCGRG 1 cut(s) 412
Aor13HI TCCGGA 1 cut(s) 469
ApoI RAATTY 5 cut(s) 5, 52, 268, 526, 551
AsuHPI GGTGA 3 cut(s) 37, 151, 560
AvaI CYCGRG 1 cut(s) 412
BaeGI GKGCMC 1 cut(s) 467
BauI CACGAG 1 cut(s) 531
BccI CCATC 2 cut(s) 190, 345
BciT130I CCWGG 1 cut(s) 384
BcoDI GTCTC 2 cut(s) 409, 467
BfaI CTAG 1 cut(s) 477
Bme1390I CCNGG 1 cut(s) 384
BmeT110I CYCGRG 1 cut(s) 412
BmrFI CCNGG 1 cut(s) 384
BpmI CTGGAG 1 cut(s) 405
BsaJI CCNNGG 2 cut(s) 181, 291
BsaWI WCCGGW 1 cut(s) 469
Bsc4I CCNNNNNNNGG 1 cut(s) 347
BseAI TCCGGA 1 cut(s) 469
BseBI CCWGG 1 cut(s) 384
BseDI CCNNGG 2 cut(s) 181, 291
BseGI GGATG 2 cut(s) 214, 356
BseLI CCNNNNNNNGG 1 cut(s) 347
BseSI GKGCMC 1 cut(s) 467
Bsh1236I CGCG 1 cut(s) 486
BsiHKCI CYCGRG 1 cut(s) 412
BsiSI CCGG 1 cut(s) 470
BslFI GGGAC 3 cut(s) 86, 145, 199
BslI CCNNNNNNNGG 1 cut(s) 347
BsmAI GTCTC 2 cut(s) 409, 467
BsmFI GGGAC 3 cut(s) 86, 145, 199
BsmI GAATGC 1 cut(s) 480
BsoBI CYCGRG 1 cut(s) 412
Bsp1286I GDGCHC 1 cut(s) 467
Bsp13I TCCGGA 1 cut(s) 469
Bsp143I GATC 2 cut(s) 286, 310
Bsp68I TCGCGA 1 cut(s) 486
BspACI CCGC 1 cut(s) 36
BspEI TCCGGA 1 cut(s) 469
BspFNI CGCG 1 cut(s) 486
BspPI GGATC 2 cut(s) 281, 305
BssECI CCNNGG 2 cut(s) 181, 291
BssMI GATC 2 cut(s) 286, 310
BssNAI GTATAC 1 cut(s) 19
BssSI CACGAG 1 cut(s) 531
BssT1I CCWWGG 2 cut(s) 181, 291
Bst1107I GTATAC 1 cut(s) 19
Bst2BI CACGAG 1 cut(s) 531
Bst2UI CCWGG 1 cut(s) 384
Bst4CI ACNGT 1 cut(s) 203
Bst6I CTCTTC 1 cut(s) 555
BstF5I GGATG 2 cut(s) 214, 356
BstFNI CGCG 1 cut(s) 486
BstKTI GATC 2 cut(s) 289, 313
BstMAI GTCTC 2 cut(s) 409, 467
BstMBI GATC 2 cut(s) 286, 310
BstNI CCWGG 1 cut(s) 384
BstNSI RCATGY 1 cut(s) 505
BstSCI CCNGG 1 cut(s) 382
BstSLI GKGCMC 1 cut(s) 467
BstUI CGCG 1 cut(s) 486
BstX2I RGATCY 1 cut(s) 310
BstXI CCANNNNNNTGG 1 cut(s) 545
BstYI RGATCY 1 cut(s) 310
BstZ17I GTATAC 1 cut(s) 19
BtsCI GGATG 2 cut(s) 214, 356
BtsI GCAGTG 1 cut(s) 438
BtsIMutI CAGTG 1 cut(s) 438
BtuMI TCGCGA 1 cut(s) 486
CaiI CAGNNNCTG 1 cut(s) 98
CviAII CATG 3 cut(s) 230, 502, 510
CviJI RGCY 5 cut(s) 41, 67, 240, 326, 543
CviKI_1 RGCY 5 cut(s) 41, 67, 240, 326, 543
DpnI GATC 2 cut(s) 288, 312
DpnII GATC 2 cut(s) 286, 310
DrdI GACNNNNNNGTC 1 cut(s) 206
DseDI GACNNNNNNGTC 1 cut(s) 206
Eam1104I CTCTTC 1 cut(s) 555
EarI CTCTTC 1 cut(s) 555
Eco130I CCWWGG 2 cut(s) 181, 291
Eco88I CYCGRG 1 cut(s) 412
EcoRI GAATTC 2 cut(s) 5, 526
EcoRII CCWGG 1 cut(s) 382
EcoT14I CCWWGG 2 cut(s) 181, 291
EcoT22I ATGCAT 2 cut(s) 225, 231
ErhI CCWWGG 2 cut(s) 181, 291
FaeI CATG 3 cut(s) 233, 505, 513
FalI AAGNNNNNCTT 2 cut(s) 25, 57
FaqI GGGAC 3 cut(s) 86, 145, 199
FatI CATG 3 cut(s) 229, 501, 509
FauI CCCGC 1 cut(s) 29
FauNDI CATATG 1 cut(s) 225
FblI GTMKAC 1 cut(s) 18
FokI GGATG 2 cut(s) 201, 363
FspBI CTAG 1 cut(s) 477
GsuI CTGGAG 1 cut(s) 405
HapII CCGG 1 cut(s) 470
Hin1II CATG 3 cut(s) 233, 505, 513
HinfI GANTC 4 cut(s) 47, 95, 161, 366
HpaII CCGG 1 cut(s) 470
HphI GGTGA 3 cut(s) 37, 151, 560
Hpy166II GTNNAC 3 cut(s) 19, 28, 538
Hpy188I TCNGA 2 cut(s) 282, 365
Hpy188III TCNNGA 4 cut(s) 412, 414, 470, 485
Hpy8I GTNNAC 3 cut(s) 19, 28, 538
HpyCH4III ACNGT 1 cut(s) 203
HpyCH4V TGCA 2 cut(s) 223, 229
Hsp92II CATG 3 cut(s) 233, 505, 513
Kpn2I TCCGGA 1 cut(s) 469
Kzo9I GATC 2 cut(s) 286, 310
LpnPI CCDG 7 cut(s) 7, 23, 72, 77, 369, 396, 483
MaeI CTAG 1 cut(s) 477
MalI GATC 2 cut(s) 288, 312
MboI GATC 2 cut(s) 286, 310
MboII GAAGA 1 cut(s) 572
MflI RGATCY 1 cut(s) 310
MhlI GDGCHC 1 cut(s) 467
MluCI AATT 8 cut(s) 5, 52, 82, 171, 268, 301, 526, 551
MmeI TCCRAC 1 cut(s) 232
MnlI CCTC 2 cut(s) 324, 341
Mph1103I ATGCAT 2 cut(s) 225, 231
MroI TCCGGA 1 cut(s) 469
MseI TTAA 1 cut(s) 422
MslI CAYNNNNRTG 2 cut(s) 228, 543
MspI CCGG 1 cut(s) 470
MspR9I CCNGG 1 cut(s) 384
Mva1269I GAATGC 1 cut(s) 480
MvaI CCWGG 1 cut(s) 384
MvnI CGCG 1 cut(s) 486
NdeI CATATG 1 cut(s) 225
NdeII GATC 2 cut(s) 286, 310
NlaIII CATG 3 cut(s) 233, 505, 513
NruI TCGCGA 1 cut(s) 486
NsiI ATGCAT 2 cut(s) 225, 231
NspI RCATGY 1 cut(s) 505
PaeR7I CTCGAG 1 cut(s) 412
PctI GAATGC 1 cut(s) 480
PfeI GAWTC 4 cut(s) 47, 95, 161, 366
PfoI TCCNGGA 1 cut(s) 382
PsiI TTATAA 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 382
PspGI CCWGG 1 cut(s) 382
PstNI CAGNNNCTG 1 cut(s) 98
PsuI RGATCY 1 cut(s) 310
RruI TCGCGA 1 cut(s) 486
RseI CAYNNNNRTG 2 cut(s) 228, 543
SaqAI TTAA 1 cut(s) 422
Sau3AI GATC 2 cut(s) 286, 310
ScrFI CCNGG 1 cut(s) 384
SduI GDGCHC 1 cut(s) 467
SetI ASST 5 cut(s) 141, 242, 328, 332, 545
Sfr274I CTCGAG 1 cut(s) 412
SlaI CTCGAG 1 cut(s) 412
SmiMI CAYNNNNRTG 2 cut(s) 228, 543
SmlI CTYRAG 1 cut(s) 412
SmoI CTYRAG 1 cut(s) 412
Sse9I AATT 8 cut(s) 5, 52, 82, 171, 268, 301, 526, 551
SsiI CCGC 1 cut(s) 36
SspMI CTAG 1 cut(s) 477
StyD4I CCNGG 1 cut(s) 382
StyI CCWWGG 2 cut(s) 181, 291
TaaI ACNGT 1 cut(s) 203
TaqI TCGA 1 cut(s) 413
TasI AATT 8 cut(s) 5, 52, 82, 171, 268, 301, 526, 551
TfiI GAWTC 4 cut(s) 47, 95, 161, 366
Tru1I TTAA 1 cut(s) 422
Tru9I TTAA 1 cut(s) 422
TscAI CASTG 1 cut(s) 445
TspDTI ATGAA 2 cut(s) 60, 174
TspRI CASTG 1 cut(s) 445
XapI RAATTY 5 cut(s) 5, 52, 268, 526, 551
XceI RCATGY 1 cut(s) 505
XhoI CTCGAG 1 cut(s) 412
XmiI GTMKAC 1 cut(s) 18
XspI CTAG 1 cut(s) 477
Zsp2I ATGCAT 2 cut(s) 225, 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.