Rh6BG279600

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000320
Physical Location & Seq
Reverse (-)
50143292 .. 50145911
2620 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG279600.1

Sequence Viewer

Length: 1878 bp
ATGGAAATATATCTACAAGCAGTATGCTATATAAAGACTACTACAAAAAATTCAAAGTACTTGCTAAAAAGAGCATATAACGTGATAATGAAATCCCAAAAGAAGATGGATATTCTAGTTGTTCTTTTTCTTGTCCTGCAGTTCTTGATGATCTCTCTGGTTCAAGGCGAAGTACATTTTTATGATTTTGTAGTAAGGGAGAAAAACTTCACCGGGTTATGCGAAACAAAGAGCATGTTTGTTGTAAATGACATTTTCCCAGGGCCGGAGATACGAGTTCATAAAGGGGATACAGTCTATGTAAATGTTCATAATCAAGGATATTATGGTCTCACTATTCACTGGCATGGAATAATGCAATTAAGAAATCCATGGTCAGATGGTCCTGAGTATATCACACAGTGTCCAATCCAACCCGGGACTAATTTCACATACGAGGTCTTGTTATCTACTGAAGAAGGAACTGTATGGTGGCATGCCCATAGTGACTGGACGCGAGCCAGCGTTCATGGCGCCATTGTCATCTTGCCTACTGTTGGAAGCACATATCCATTTCCTCAACCCGATGAAGATGAGGTCATTATATTATCATCCTGGTACTTGGGAGATTTGAAAGCAAGGGTTGATGAGGCTATGGAAGAAGCCACATCTTTACCCCATTCTGATGCATACACCATAAATGGCCAGCCAGGGGATCTTTGTCCATGCTCCAACGAGACAACATATTGTCGAAAAGTGGATTATGGCAAGACTTATCTTCTTCGTATAGTCAATGCAAACATAGATGCATACCTTTTCTTCGCAGTTGCTCAACACAACCTCACTGTTGTTGGACTAGACGGAGCCTATATCAAACCCATATACACAACCTACATCCTCATAAGCCCTGGACAAACTATGGATGTTTTACTCAAAGCAGATCAGGTTCTTGGGCGCTATTACATGGCTGGTAGACATTTCTCTAGTGATAATGCCAAAGTTTCTGAATTTGACCATGTCAATGTTACTGCAATCTTGGAATACAATGGCAACTATATTTATCCAACATCTCCTCTTTTTCCCAAAACCCTTCCTATGTACTTAGACTTTGCAGCATCATTAAACTTCACTTACCAAATTAAAAGCTTAGCCTCCCCAGAATATCCAATAAATGTCCCACCAGACAATGACATTACAACCAGAATGTTTATAACAGCTTCCATGAATTCACTCTACTGTGAAGATTCAGGCTTCTTGAGCTGCATGGAGATACCCATTGCTACAAGCGTAAATAACATTAGCTGGGTGAACCCGAGGAGCACAGATCTTTTGCAAGCTTACTACAGGAACATAAGTGGGGTTTACTCAACAGATTTTCCAGACCAACCGCCTACTTATTATAACTTTACAGACAAAACTTACTCGAAAGATACCGTGTTAACAGTACAAGGGACAAAGGTGAAGGTGTTAAGTTATAATGAGTCGGTTGAGATTGTGTTCCAAGGGACTGATGTGCAAGGAGGCTCTGTGAATCATCCACTGCATATGCATGGATATAAGTTCTATGTCGTTGGATATGGTTTCGGAAATTATGACAATGAGACTGCCCCGAAAGGGTTTAATTTGGTTGATCCTCCTCATGTCACTACATTTGGAGTTCCCAAAAATGGATGGCTGGCTATCAGATTCATAGCAAATAATCCTGGTGTTTGGTTTTGGCATTGTCATATGGAAAGACACACGACTTTGGGTATGGAAGCTGCATTCATAGTGAAGAATGGGGACACCGCTGAAACTAGCATACTCGAACCCCCAGCTTACATGCCTTCCTGTAATGTTCCATTGGTTTCTCGTATCGAAAATTCTGATGAGTTTGTTGAAAAGTTAATAGATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

625

Amino Acids

70.74

Weight (kDa)

5.31

Isoelectric Point (pI)

34.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 65 - 177 4.5e-37 Multicopper oxidase
Cu-oxidase PF00394 191 - 344 9.5e-35 Multicopper oxidase
Cu-oxidase_2 PF07731 451 - 587 5.9e-38 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000320)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g12640 FvH4_2g18980 FvH4_2g18990 FvH4_2g40270 FvH4_2g40270 FvH4_4g22740 FvH4_4g22740 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g36460 FvH4_5g36460 FvH4_6g39950 FvH4_6g39970 FvH4_6g39983 FvH4_6g39990
rosa_chinensis RchiOBHm_Chr2g0154481 RchiOBHm_Chr2g0154511 RchiOBHm_Chr4g0428961 RchiOBHm_Chr6g0252431 RchiOBHm_Chr6g0273301 RchiOBHm_Chr6g0273631 RchiOBHm_Chr6g0273651 RchiOBHm_Chr6g0284751 RchiOBHm_Chr6g0284761 RchiOBHm_Chr6g0300491 RchiOBHm_Chr7g0237421 RchiOBHm_Chr7g0238581
rosa_laevigata RLG00000000906 RLG00000001006 RLG00000007110 RLG00000011333 RLG00000012721 RLG00000013605 RLG00000013626 RLG00000020780 RLG00000020782 RLG00000020783 RLG00000020786
rosa_multiflora Rmu_co8321753.1_g000001 Rmu_sc0000239.1_g000020 Rmu_sc0000686.1_g000001 Rmu_sc0000686.1_g000003 Rmu_sc0000686.1_g000005 Rmu_sc0001476.1_g000011 Rmu_sc0002231.1_g000002 Rmu_sc0002231.1_g000016 Rmu_sc0002690.1_g000003 Rmu_sc0002717.1_g000015 Rmu_sc0002923.1_g000026 Rmu_sc0003808.1_g000016 Rmu_sc0006475.1_g000008 Rmu_sc0006475.1_g000012 Rmu_sc0006475.1_g000018 Rmu_sc0014815.1_g000004 Rmu_sc0015313.1_g000012
rosa_roxburghii Rroxscaffold_2G00094270 Rroxscaffold_2G00094290 Rroxscaffold_3G00222950 Rroxscaffold_3G00224250 Rroxscaffold_5G00370630 Rroxscaffold_7G00167740 Rroxscaffold_7G00184410 Rroxscaffold_7G00195190 Rroxscaffold_7G00195460
rosa_rugosa Rorug02G0444600 Rorug04G0231100 Rorug04G0231200 Rorug06G0074000 Rorug06G0076800 Rorug06G0166400 Rorug06G0166500 Rorug06G0166600 Rorug06G0296400 Rorug07G0303000
rosa_samantha Rh2CG494600 Rh2CG494700 Rh2DG530800 Rh2DG530900 Rh2DG531000 Rh4AG287500 Rh4AG403800 Rh4BG293400 Rh4BG415100 Rh4DG290500 Rh6AG191000 Rh6AG191300 Rh6BG192500 Rh6BG194800 Rh6BG195200 Rh6BG279500 Rh6BG279600 Rh6DG183900 Rh6DG186600 Rh6DG274300 Rh6DG274500 Rh6DG409500 Rh7AG460600 Rh7AG468200 Rh7BG430200
rosa_wichuraiana Rw2G041820 Rw2G041830 Rw2G041840 Rw4G024930 Rw6G016470 Rw6G016720 Rw6G016730 Rw6G024020 Rw6G024030 Rw6G035790 Rw7G038130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1190, 1380, 1455
AccB1I GGYRCC 1 cut(s) 512
AccI GTMKAC 1 cut(s) 952
AccII CGCG 1 cut(s) 496
AciI CCGC 2 cut(s) 1367, 1767
AclWI GGATC 2 cut(s) 702, 1604
AcoI YGGCCR 1 cut(s) 682
AcsI RAATTY 4 cut(s) 49, 986, 1204, 1840
AcuI CTGAAG 1 cut(s) 474
AcyI GRCGYC 1 cut(s) 513
AdeI CACNNNGTG 1 cut(s) 402
AfaI GTAC 5 cut(s) 59, 174, 599, 1079, 1425
AfiI CCNNNNNNNGG 5 cut(s) 265, 536, 691, 1593, 1646
AgsI TTSAA 4 cut(s) 54, 164, 613, 1859
AjnI CCWGG 5 cut(s) 259, 593, 688, 886, 1681
AluBI AGCT 7 cut(s) 1125, 1196, 1239, 1281, 1316, 1739, 1796
AluI AGCT 7 cut(s) 1125, 1196, 1239, 1281, 1316, 1739, 1796
Alw21I GWGCWC 1 cut(s) 1301
Alw26I GTCTC 3 cut(s) 335, 710, 1574
AlwI GGATC 2 cut(s) 702, 1604
Ama87I CYCGRG 2 cut(s) 416, 1291
AoxI GGCC 2 cut(s) 263, 682
ApeKI GCWGC 3 cut(s) 1091, 1239, 1739
ApoI RAATTY 4 cut(s) 49, 986, 1204, 1840
Asp700I GAANNNNTTC 1 cut(s) 206
AspLEI GCGC 2 cut(s) 515, 936
AspS9I GGNCC 2 cut(s) 263, 383
AsuC2I CCSGG 3 cut(s) 214, 417, 418
AsuHPI GGTGA 3 cut(s) 202, 1297, 1450
AvaI CYCGRG 2 cut(s) 416, 1291
AvaII GGWCC 1 cut(s) 383
BalI TGGCCA 1 cut(s) 684
BanI GGYRCC 1 cut(s) 512
Bbv12I GWGCWC 1 cut(s) 1301
BbvI GCAGC 3 cut(s) 1103, 1226, 1726
BccI CCATC 3 cut(s) 100, 374, 1644
BciT130I CCWGG 5 cut(s) 261, 595, 690, 888, 1683
BciVI GTATCC 1 cut(s) 283
BcnI CCSGG 3 cut(s) 214, 417, 418
BcoDI GTCTC 3 cut(s) 335, 710, 1574
BfaI CTAG 4 cut(s) 116, 836, 963, 1776
BfmI CTRYAG 2 cut(s) 137, 1321
BfoI RGCGCY 2 cut(s) 516, 937
BfuI GTATCC 1 cut(s) 283
BglII AGATCT 1 cut(s) 1303
BisI GCNGC 3 cut(s) 1092, 1240, 1740
BlpI GCTNAGC 1 cut(s) 1126
BlsI GCNGC 3 cut(s) 1093, 1241, 1741
BmcAI AGTACT 1 cut(s) 59
Bme1390I CCNGG 8 cut(s) 214, 261, 417, 418, 595, 690, 888, 1683
Bme18I GGWCC 1 cut(s) 383
BmeT110I CYCGRG 2 cut(s) 416, 1291
BmgT120I GGNCC 2 cut(s) 263, 383
BmiI GGNNCC 2 cut(s) 514, 844
BmrFI CCNGG 8 cut(s) 214, 261, 417, 418, 595, 690, 888, 1683
BmsI GCATC 3 cut(s) 655, 775, 1103
Bpu1102I GCTNAGC 1 cut(s) 1126
BpuEI CTTGAG 1 cut(s) 1255
BpuMI CCSGG 3 cut(s) 214, 417, 418
BsaHI GRCGYC 1 cut(s) 513
BsaI GGTCTC 1 cut(s) 335
BsaJI CCNNGG 8 cut(s) 259, 260, 371, 416, 689, 886, 1292, 1480
BsaXI ACNNNNNCTCC 2 cut(s) 1491, 1521
Bsc4I CCNNNNNNNGG 5 cut(s) 265, 536, 691, 1593, 1646
Bse1I ACTGG 2 cut(s) 347, 494
Bse3DI GCAATG 1 cut(s) 1254
BseBI CCWGG 5 cut(s) 261, 595, 690, 888, 1683
BseDI CCNNGG 8 cut(s) 259, 260, 371, 416, 689, 886, 1292, 1480
BseGI GGATG 5 cut(s) 590, 873, 907, 1513, 1655
BseLI CCNNNNNNNGG 5 cut(s) 265, 536, 691, 1593, 1646
BseMI GCAATG 1 cut(s) 1254
BseMII CTCAG 1 cut(s) 378
BseNI ACTGG 2 cut(s) 347, 494
BseRI GAGGAG 3 cut(s) 1041, 1309, 1605
BseXI GCAGC 3 cut(s) 1103, 1226, 1726
BseYI CCCAGC 2 cut(s) 1281, 1792
Bsh1236I CGCG 1 cut(s) 496
BshFI GGCC 2 cut(s) 265, 684
BshNI GGYRCC 1 cut(s) 512
BsiHKAI GWGCWC 1 cut(s) 1301
BsiHKCI CYCGRG 2 cut(s) 416, 1291
BsiSI CCGG 3 cut(s) 213, 266, 417
BslFI GGGAC 5 cut(s) 433, 1139, 1444, 1498, 1775
BslI CCNNNNNNNGG 5 cut(s) 265, 536, 691, 1593, 1646
BsmAI GTCTC 3 cut(s) 335, 710, 1574
BsmFI GGGAC 5 cut(s) 433, 1139, 1444, 1498, 1775
BsmI GAATGC 1 cut(s) 1742
BsnI GGCC 2 cut(s) 265, 684
Bso31I GGTCTC 1 cut(s) 335
BsoBI CYCGRG 2 cut(s) 416, 1291
Bsp1286I GDGCHC 1 cut(s) 1301
Bsp143I GATC 6 cut(s) 150, 694, 919, 1303, 1609, 1870
Bsp1720I GCTNAGC 1 cut(s) 1126
Bsp19I CCATGG 1 cut(s) 371
BspACI CCGC 2 cut(s) 1367, 1767
BspANI GGCC 2 cut(s) 265, 684
BspCNI CTCAG 1 cut(s) 379
BspFNI CGCG 1 cut(s) 496
BspLI GGNNCC 2 cut(s) 514, 844
BspMAI CTGCAG 1 cut(s) 141
BspPI GGATC 2 cut(s) 702, 1604
BspT107I GGYRCC 1 cut(s) 512
BspTNI GGTCTC 1 cut(s) 335
BsrDI GCAATG 1 cut(s) 1254
BsrI ACTGG 2 cut(s) 347, 494
BssECI CCNNGG 8 cut(s) 259, 260, 371, 416, 689, 886, 1292, 1480
BssMI GATC 6 cut(s) 150, 694, 919, 1303, 1609, 1870
BssNI GRCGYC 1 cut(s) 513
BssT1I CCWWGG 2 cut(s) 371, 1480
Bst2UI CCWGG 5 cut(s) 261, 595, 690, 888, 1683
Bst4CI ACNGT 8 cut(s) 295, 402, 466, 535, 826, 1217, 1414, 1423
BstACI GRCGYC 1 cut(s) 513
BstC8I GCNNGC 6 cut(s) 477, 498, 502, 686, 1314, 1656
BstDEI CTNAG 3 cut(s) 387, 1081, 1126
BstDSI CCRYGG 1 cut(s) 371
BstF5I GGATG 5 cut(s) 590, 873, 907, 1513, 1655
BstFNI CGCG 1 cut(s) 496
BstH2I RGCGCY 2 cut(s) 516, 937
BstHHI GCGC 2 cut(s) 515, 936
BstKTI GATC 6 cut(s) 153, 697, 922, 1306, 1612, 1873
BstMAI GTCTC 3 cut(s) 335, 710, 1574
BstMBI GATC 6 cut(s) 150, 694, 919, 1303, 1609, 1870
BstMWI GCNNNNNNNGC 2 cut(s) 510, 1236
BstNI CCWGG 5 cut(s) 261, 595, 690, 888, 1683
BstNSI RCATGY 3 cut(s) 238, 479, 1804
BstSCI CCNGG 8 cut(s) 212, 259, 415, 416, 593, 688, 886, 1681
BstSFI CTRYAG 2 cut(s) 137, 1321
BstUI CGCG 1 cut(s) 496
BstV1I GCAGC 3 cut(s) 1103, 1226, 1726
BstX2I RGATCY 2 cut(s) 694, 1303
BstYI RGATCY 2 cut(s) 694, 1303
BsuI GTATCC 1 cut(s) 283
BsuRI GGCC 2 cut(s) 265, 684
BtgI CCRYGG 1 cut(s) 371
BtsCI GGATG 5 cut(s) 590, 873, 907, 1513, 1655
BtsI GCAGTG 1 cut(s) 1517
BtsIMutI CAGTG 4 cut(s) 340, 407, 822, 1517
Cac8I GCNNGC 6 cut(s) 477, 498, 502, 686, 1314, 1656
CfoI GCGC 2 cut(s) 515, 936
Cfr13I GGNCC 2 cut(s) 263, 383
Cfr9I CCCGGG 1 cut(s) 416
CseI GACGC 1 cut(s) 502
Csp6I GTAC 5 cut(s) 58, 173, 598, 1078, 1424
CviQI GTAC 5 cut(s) 58, 173, 598, 1078, 1424
DdeI CTNAG 3 cut(s) 387, 1081, 1126
DinI GGCGCC 1 cut(s) 514
DpnI GATC 6 cut(s) 152, 696, 921, 1305, 1611, 1872
DpnII GATC 6 cut(s) 150, 694, 919, 1303, 1609, 1870
DraIII CACNNNGTG 1 cut(s) 402
EaeI YGGCCR 1 cut(s) 682
Eco130I CCWWGG 2 cut(s) 371, 1480
Eco31I GGTCTC 1 cut(s) 335
Eco47I GGWCC 1 cut(s) 383
Eco57I CTGAAG 1 cut(s) 474
Eco88I CYCGRG 2 cut(s) 416, 1291
EcoRI GAATTC 1 cut(s) 1204
EcoRII CCWGG 5 cut(s) 259, 593, 688, 886, 1681
EcoT14I CCWWGG 2 cut(s) 371, 1480
EcoT22I ATGCAT 3 cut(s) 670, 790, 1530
EgeI GGCGCC 1 cut(s) 514
EheI GGCGCC 1 cut(s) 514
ErhI CCWWGG 2 cut(s) 371, 1480
FaqI GGGAC 5 cut(s) 433, 1139, 1444, 1498, 1775
FauNDI CATATG 2 cut(s) 1524, 1707
FblI GTMKAC 1 cut(s) 952
Fnu4HI GCNGC 3 cut(s) 1092, 1240, 1740
FokI GGATG 5 cut(s) 577, 860, 914, 1500, 1662
Fsp4HI GCNGC 3 cut(s) 1092, 1240, 1740
FspBI CTAG 4 cut(s) 116, 836, 963, 1776
GlaI GCGC 2 cut(s) 514, 935
GluI GCNGC 3 cut(s) 1092, 1240, 1740
GsaI CCCAGC 2 cut(s) 1285, 1796
HaeII RGCGCY 2 cut(s) 516, 937
HaeIII GGCC 2 cut(s) 265, 684
HapII CCGG 3 cut(s) 213, 266, 417
HgaI GACGC 1 cut(s) 502
HhaI GCGC 2 cut(s) 515, 936
Hin1I GRCGYC 1 cut(s) 513
Hin6I GCGC 2 cut(s) 513, 934
HinP1I GCGC 2 cut(s) 513, 934
HincII GTYRAC 1 cut(s) 1419
HindII GTYRAC 1 cut(s) 1419
HindIII AAGCTT 2 cut(s) 1123, 1314
HinfI GANTC 4 cut(s) 1223, 1460, 1510, 1665
HpaI GTTAAC 1 cut(s) 1419
HpaII CCGG 3 cut(s) 213, 266, 417
HphI GGTGA 3 cut(s) 202, 1297, 1450
Hpy166II GTNNAC 4 cut(s) 953, 1288, 1342, 1419
Hpy188I TCNGA 6 cut(s) 379, 664, 985, 1565, 1664, 1846
Hpy188III TCNNGA 4 cut(s) 145, 386, 1234, 1358
Hpy8I GTNNAC 4 cut(s) 953, 1288, 1342, 1419
HpyAV CCTTC 4 cut(s) 452, 1079, 1435, 1815
HpyCH4III ACNGT 8 cut(s) 295, 402, 466, 535, 826, 1217, 1414, 1423
HpyCH4IV ACGT 1 cut(s) 81
HpyF10VI GCNNNNNNNGC 2 cut(s) 510, 1236
HpyF3I CTNAG 3 cut(s) 387, 1081, 1126
HpySE526I ACGT 1 cut(s) 81
Hsp92I GRCGYC 1 cut(s) 513
HspAI GCGC 2 cut(s) 513, 934
KasI GGCGCC 1 cut(s) 512
KspAI GTTAAC 1 cut(s) 1419
Kzo9I GATC 6 cut(s) 150, 694, 919, 1303, 1609, 1870
LmnI GCTCC 3 cut(s) 713, 842, 1296
Lsp1109I GCAGC 3 cut(s) 1103, 1226, 1726
LweI GCATC 3 cut(s) 655, 775, 1103
MaeI CTAG 4 cut(s) 116, 836, 963, 1776
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 3 cut(s) 485, 1003, 1621
MalI GATC 6 cut(s) 152, 696, 921, 1305, 1611, 1872
MboI GATC 6 cut(s) 150, 694, 919, 1303, 1609, 1870
MboII GAAGA 9 cut(s) 115, 467, 581, 650, 749, 752, 790, 1232, 1765
MflI RGATCY 2 cut(s) 694, 1303
MhlI GDGCHC 1 cut(s) 1301
MlsI TGGCCA 1 cut(s) 684
MluCI AATT 9 cut(s) 49, 359, 424, 986, 1116, 1204, 1567, 1600, 1840
MluNI TGGCCA 1 cut(s) 684
Mly113I GGCGCC 1 cut(s) 513
MlyI GAGTC 1 cut(s) 1469
MmeI TCCRAC 6 cut(s) 436, 517, 735, 811, 1067, 1531
Mox20I TGGCCA 1 cut(s) 684
Mph1103I ATGCAT 3 cut(s) 670, 790, 1530
MroXI GAANNNNTTC 1 cut(s) 206
MscI TGGCCA 1 cut(s) 684
MseI TTAA 7 cut(s) 362, 1100, 1119, 1418, 1448, 1599, 1865
MslI CAYNNNNRTG 5 cut(s) 180, 345, 663, 999, 1527
Msp20I TGGCCA 1 cut(s) 684
MspA1I CMGCKG 1 cut(s) 1769
MspI CCGG 3 cut(s) 213, 266, 417
MspR9I CCNGG 8 cut(s) 214, 261, 417, 418, 595, 690, 888, 1683
Mva1269I GAATGC 1 cut(s) 1742
MvaI CCWGG 5 cut(s) 261, 595, 690, 888, 1683
MvnI CGCG 1 cut(s) 496
MwoI GCNNNNNNNGC 2 cut(s) 510, 1236
NarI GGCGCC 1 cut(s) 513
NciI CCSGG 3 cut(s) 214, 417, 418
NcoI CCATGG 1 cut(s) 371
NdeI CATATG 2 cut(s) 1524, 1707
NdeII GATC 6 cut(s) 150, 694, 919, 1303, 1609, 1870
NlaIV GGNNCC 2 cut(s) 514, 844
NmuCI GTSAC 2 cut(s) 485, 1621
NsiI ATGCAT 3 cut(s) 670, 790, 1530
NspI RCATGY 3 cut(s) 238, 479, 1804
PaeI GCATGC 1 cut(s) 479
PasI CCCWGGG 1 cut(s) 260
PctI GAATGC 1 cut(s) 1742
PdmI GAANNNNTTC 1 cut(s) 206
PfeI GAWTC 3 cut(s) 1223, 1510, 1665
PflFI GACNNNGTC 1 cut(s) 995
PkrI GCNGC 3 cut(s) 1093, 1241, 1741
PleI GAGTC 1 cut(s) 1468
PluTI GGCGCC 1 cut(s) 516
PpsI GAGTC 1 cut(s) 1468
PsiI TTATAA 3 cut(s) 1190, 1380, 1455
Psp6I CCWGG 5 cut(s) 259, 593, 688, 886, 1681
PspFI CCCAGC 2 cut(s) 1281, 1792
PspGI CCWGG 5 cut(s) 259, 593, 688, 886, 1681
PspN4I GGNNCC 2 cut(s) 514, 844
PspPI GGNCC 2 cut(s) 263, 383
PstI CTGCAG 1 cut(s) 141
PsuI RGATCY 2 cut(s) 694, 1303
PsyI GACNNNGTC 1 cut(s) 995
RsaI GTAC 5 cut(s) 59, 174, 599, 1079, 1425
RsaNI GTAC 5 cut(s) 58, 173, 598, 1078, 1424
RseI CAYNNNNRTG 5 cut(s) 180, 345, 663, 999, 1527
SaqAI TTAA 7 cut(s) 362, 1100, 1119, 1418, 1448, 1599, 1865
SatI GCNGC 3 cut(s) 1092, 1240, 1740
Sau3AI GATC 6 cut(s) 150, 694, 919, 1303, 1609, 1870
Sau96I GGNCC 2 cut(s) 263, 383
ScaI AGTACT 1 cut(s) 59
SchI GAGTC 1 cut(s) 1469
ScrFI CCNGG 8 cut(s) 214, 261, 417, 418, 595, 690, 888, 1683
SduI GDGCHC 1 cut(s) 1301
SfaNI GCATC 3 cut(s) 655, 775, 1103
SfcI CTRYAG 2 cut(s) 137, 1321
SfoI GGCGCC 1 cut(s) 514
SinI GGWCC 1 cut(s) 383
SmaI CCCGGG 1 cut(s) 418
SmiMI CAYNNNNRTG 5 cut(s) 180, 345, 663, 999, 1527
SmlI CTYRAG 1 cut(s) 1234
SmoI CTYRAG 1 cut(s) 1234
SphI GCATGC 1 cut(s) 479
Sse9I AATT 9 cut(s) 49, 359, 424, 986, 1116, 1204, 1567, 1600, 1840
SsiI CCGC 2 cut(s) 1367, 1767
SspDI GGCGCC 1 cut(s) 512
SspMI CTAG 4 cut(s) 116, 836, 963, 1776
StyD4I CCNGG 8 cut(s) 212, 259, 415, 416, 593, 688, 886, 1681
StyI CCWWGG 2 cut(s) 371, 1480
TaaI ACNGT 8 cut(s) 295, 402, 466, 535, 826, 1217, 1414, 1423
TaiI ACGT 1 cut(s) 84
TaqI TCGA 4 cut(s) 730, 1403, 1785, 1836
TasI AATT 9 cut(s) 49, 359, 424, 986, 1116, 1204, 1567, 1600, 1840
TatI WGTACW 4 cut(s) 57, 172, 1077, 1423
TfiI GAWTC 3 cut(s) 1223, 1510, 1665
Tru1I TTAA 7 cut(s) 362, 1100, 1119, 1418, 1448, 1599, 1865
Tru9I TTAA 7 cut(s) 362, 1100, 1119, 1418, 1448, 1599, 1865
TscAI CASTG 4 cut(s) 347, 407, 829, 1524
TseFI GTSAC 2 cut(s) 485, 1621
TseI GCWGC 3 cut(s) 1091, 1239, 1739
Tsp45I GTSAC 2 cut(s) 485, 1621
TspDTI ATGAA 8 cut(s) 104, 269, 299, 497, 582, 1217, 1657, 1735
TspGWI ACGGA 1 cut(s) 855
TspMI CCCGGG 1 cut(s) 416
TspRI CASTG 4 cut(s) 347, 407, 829, 1524
Tth111I GACNNNGTC 1 cut(s) 995
VpaK11BI GGWCC 1 cut(s) 383
XapI RAATTY 4 cut(s) 49, 986, 1204, 1840
XceI RCATGY 3 cut(s) 238, 479, 1804
XmaI CCCGGG 1 cut(s) 416
XmiI GTMKAC 1 cut(s) 952
XmnI GAANNNNTTC 1 cut(s) 206
XspI CTAG 4 cut(s) 116, 836, 963, 1776
ZrmI AGTACT 1 cut(s) 59
Zsp2I ATGCAT 3 cut(s) 670, 790, 1530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.