FvH4_5g36460

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000320
Physical Location & Seq
Reverse (-)
26744115 .. 26747456
3342 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g36460.t2

Sequence Viewer

Length: 1773 bp
ATGACACAGATTGTAATATTTCTTCTTCTTATTGTGGTGCTCTTCTCTCTGCTGGTTGAAGGCAAAGTGCATTACTATGATTTTTTAGTCAGGGAGCAAAATTTCACCAGGTTATGTGAAACGAAGAGCATGTTAGTTGTAAATGATCGTTTCCCAGGCCCACAAATACGAGTTCATGGAGGAGATAAAATTTATGTAAATGTTCAGAATGAAGGAAGCCACGGTTTAACAATTCACTGGCATGGAATAAGGCAGCTAAGAAATCCATGGTCAGATGGACCTGAGTATATCACACAGTGTCCTATTCAACCTGGAACAAATTTCACGTACGAAGTTATATTATCAAAGGAAGAAGGAACTGTATGGTGGCATGCTCACAGTGATTGGACGCGTGCCAGTGTTCATGGTGCCATCGTCATCTTGCCTGCTGTTGGAACCACATTTCCATTTCCTAAACCTGATGAAGATGAGGTCATAGTAATCGCATCCTGGTACAAGGGAGATCTGCAAGCGCGGGTTGATGAGGCTATGGAAAATGACGAGAACTTACCTCATTCTGATGCTTACACCATAAATGGGCAGCCTGGAGATCTTTGTCCTTGCTCAAATGAAGCAACTTACCGTCGCAAAGTGGACTACGGCAAGACCTATCTTCTTCGTATAGTCAATGCAAACATTGATGCAGATATTTTCTTTGCAATTGCACAACACAACTTTACTGTGGTTGGACTCGATGGAGCCTATATTAAACCTATTGACACAACCTACATATTGTTGACCCCTGGACAAACAATGGATGTTTTGCTTGAAGCAAATCAGGTTCTCGGACACTATTACATGGCCGGGAGACATTTCTCGAGTGAGAATGTGGCTGTTGTCAATTTTGACCATGCGAATGTTACTGCAATTTTACAATACAATGGCAACTATTCCCATCTGACATCTCCTGTCTTTCCCAGTAGTCTTCCGATGTACTATGACTTTGTAGCATCACTGAAGTTCATAAACCAAATTCGAAGCTTAGCCATCCCGGATTATGTTATAAATGTCCCACTAGACTATGAAATTACTACTAGGATGTTTATAACAACTTCCATGAATTCTCTCTATTGTGAAGATTCAAGCTCAGGTTGTGAAACGAAACAAATCAGTGCAAGCGTAAATAATATCAGTTGGGTTAACCCAAGTACTGATATCTTGGAAGCCTATTACAGAAACATAAGCGGAGTCTACTCAGCAGACTTCCCAGATAATCCACCTTCTTTCTATAACTTCACTGATGAATCGTACTCGATCGATACGGTGTTAACAGTACAAGGGAGAAAGGTTAAGGTGTTAAATTACAATGAATCAGTTGAGATTGTATTCCAGGGGACTAATGTTTTAGGCGGCTCTGTGAATCATCCGATGCATTTGCATGGATATAGCTTTTACGTGGTTGGGTATGGCTTTGGAATCTATGACAATGTTACTGACCCCAAAGGGTTTAATTTAGTTGATCCTCCTGAGGTAAATACATTTGCAGTTCCTAAGAATGGATGGTTAGCAATCAGATTCTCAGCAAACAACCCAGGGGTGTGGTTTTGGCATTGTCATATGGAGAGACACATGACTTGGGGTATGGAAGCTGCGTTTATAGTAAAGAATGGGAACACTGTTGAGACTAGCATTCGCCAACCTCCAGATTACATGCCTCCATGTAACATCCCATTATTAGATTCTACTCTCAAAAACTTGCAGGAGATTACTAAGAAGAAAGTTGACTATAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

591

Amino Acids

66.75

Weight (kDa)

5.29

Isoelectric Point (pI)

31.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 30 - 142 1.3e-38 Multicopper oxidase
Cu-oxidase PF00394 156 - 309 5.2e-35 Multicopper oxidase
Cu-oxidase_2 PF07731 415 - 527 7.2e-25 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000320)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g12640 FvH4_2g18980 FvH4_2g18990 FvH4_2g40270 FvH4_2g40270 FvH4_4g22740 FvH4_4g22740 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g36460 FvH4_5g36460 FvH4_6g39950 FvH4_6g39970 FvH4_6g39983 FvH4_6g39990
rosa_chinensis RchiOBHm_Chr2g0154481 RchiOBHm_Chr2g0154511 RchiOBHm_Chr4g0428961 RchiOBHm_Chr6g0252431 RchiOBHm_Chr6g0273301 RchiOBHm_Chr6g0273631 RchiOBHm_Chr6g0273651 RchiOBHm_Chr6g0284751 RchiOBHm_Chr6g0284761 RchiOBHm_Chr6g0300491 RchiOBHm_Chr7g0237421 RchiOBHm_Chr7g0238581
rosa_laevigata RLG00000000906 RLG00000001006 RLG00000007110 RLG00000011333 RLG00000012721 RLG00000013605 RLG00000013626 RLG00000020780 RLG00000020782 RLG00000020783 RLG00000020786
rosa_multiflora Rmu_co8321753.1_g000001 Rmu_sc0000239.1_g000020 Rmu_sc0000686.1_g000001 Rmu_sc0000686.1_g000003 Rmu_sc0000686.1_g000005 Rmu_sc0001476.1_g000011 Rmu_sc0002231.1_g000002 Rmu_sc0002231.1_g000016 Rmu_sc0002690.1_g000003 Rmu_sc0002717.1_g000015 Rmu_sc0002923.1_g000026 Rmu_sc0003808.1_g000016 Rmu_sc0006475.1_g000008 Rmu_sc0006475.1_g000012 Rmu_sc0006475.1_g000018 Rmu_sc0014815.1_g000004 Rmu_sc0015313.1_g000012
rosa_roxburghii Rroxscaffold_2G00094270 Rroxscaffold_2G00094290 Rroxscaffold_3G00222950 Rroxscaffold_3G00224250 Rroxscaffold_5G00370630 Rroxscaffold_7G00167740 Rroxscaffold_7G00184410 Rroxscaffold_7G00195190 Rroxscaffold_7G00195460
rosa_rugosa Rorug02G0444600 Rorug04G0231100 Rorug04G0231200 Rorug06G0074000 Rorug06G0076800 Rorug06G0166400 Rorug06G0166500 Rorug06G0166600 Rorug06G0296400 Rorug07G0303000
rosa_samantha Rh2CG494600 Rh2CG494700 Rh2DG530800 Rh2DG530900 Rh2DG531000 Rh4AG287500 Rh4AG403800 Rh4BG293400 Rh4BG415100 Rh4DG290500 Rh6AG191000 Rh6AG191300 Rh6BG192500 Rh6BG194800 Rh6BG195200 Rh6BG279500 Rh6BG279600 Rh6DG183900 Rh6DG186600 Rh6DG274300 Rh6DG274500 Rh6DG409500 Rh7AG460600 Rh7AG468200 Rh7BG430200
rosa_wichuraiana Rw2G041820 Rw2G041830 Rw2G041840 Rw4G024930 Rw6G016470 Rw6G016720 Rw6G016730 Rw6G024020 Rw6G024030 Rw6G035790 Rw7G038130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1043, 1085
AccB1I GGYRCC 1 cut(s) 407
AccI GTMKAC 1 cut(s) 1230
AccII CGCG 2 cut(s) 391, 514
AciI CCGC 3 cut(s) 514, 1224, 1389
AclWI GGATC 1 cut(s) 1493
AcoI YGGCCR 1 cut(s) 840
AcsI RAATTY 5 cut(s) 100, 189, 319, 1011, 1099
AcuI CTGAAG 1 cut(s) 1016
AdeI CACNNNGTG 1 cut(s) 297
AfaI GTAC 6 cut(s) 329, 494, 974, 1189, 1289, 1314
AfiI CCNNNNNNNGG 3 cut(s) 431, 576, 1535
AflIII ACRYGT 1 cut(s) 389
AgsI TTSAA 4 cut(s) 59, 308, 809, 1122
AjnI CCWGG 8 cut(s) 107, 154, 310, 488, 583, 781, 1368, 1570
AloI GAACNNNNNNTCC 2 cut(s) 427, 459
AluBI AGCT 5 cut(s) 256, 1020, 1125, 1428, 1628
AluI AGCT 5 cut(s) 256, 1020, 1125, 1428, 1628
Alw21I GWGCWC 1 cut(s) 42
Alw26I GTCTC 3 cut(s) 841, 1597, 1655
AlwI GGATC 1 cut(s) 1493
Ama87I CYCGRG 1 cut(s) 856
AoxI GGCC 2 cut(s) 157, 840
ApeKI GCWGC 3 cut(s) 253, 580, 1628
ApoI RAATTY 5 cut(s) 100, 189, 319, 1011, 1099
AspLEI GCGC 1 cut(s) 514
AspS9I GGNCC 2 cut(s) 158, 278
AsuC2I CCSGG 2 cut(s) 844, 1031
AsuHPI GGTGA 1 cut(s) 97
AsuII TTCGAA 1 cut(s) 1015
AvaI CYCGRG 1 cut(s) 856
AvaII GGWCC 1 cut(s) 278
AxyI CCTNAGG 1 cut(s) 1506
BanI GGYRCC 1 cut(s) 407
BarI GAAGNNNNNNTAC 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 956
Bbv12I GWGCWC 1 cut(s) 42
BbvI GCAGC 3 cut(s) 265, 592, 1615
BccI CCATC 6 cut(s) 269, 419, 728, 942, 1034, 1533
BceAI ACGGC 1 cut(s) 655
BcgI CGANNNNNNTGC 2 cut(s) 1396, 1430
BciT130I CCWGG 8 cut(s) 109, 156, 312, 490, 585, 783, 1370, 1572
BcnI CCSGG 2 cut(s) 844, 1031
BcoDI GTCTC 3 cut(s) 841, 1597, 1655
BfaI CTAG 3 cut(s) 1055, 1074, 1665
BfmI CTRYAG 1 cut(s) 1765
BglII AGATCT 2 cut(s) 502, 589
BisI GCNGC 4 cut(s) 254, 581, 1390, 1629
BlpI GCTNAGC 1 cut(s) 1021
BlsI GCNGC 4 cut(s) 255, 582, 1391, 1630
BmcAI AGTACT 1 cut(s) 1189
Bme18I GGWCC 1 cut(s) 278
BmeT110I CYCGRG 1 cut(s) 856
BmgT120I GGNCC 2 cut(s) 158, 278
BmiI GGNNCC 3 cut(s) 409, 436, 739
BmrI ACTGGG 1 cut(s) 951
BmsI GCATC 5 cut(s) 494, 550, 670, 998, 1398
BmuI ACTGGG 1 cut(s) 951
BpiI GAAGAC 1 cut(s) 956
BpmI CTGGAG 2 cut(s) 606, 1665
Bpu10I CCTNAGC 1 cut(s) 1126
Bpu1102I GCTNAGC 1 cut(s) 1021
Bpu14I TTCGAA 1 cut(s) 1015
BpuMI CCSGG 2 cut(s) 844, 1031
Bsa29I ATCGAT 1 cut(s) 1296
BsaAI YACGTR 2 cut(s) 327, 1435
BsaJI CCNNGG 7 cut(s) 154, 220, 266, 781, 1369, 1570, 1571
Bsc4I CCNNNNNNNGG 3 cut(s) 431, 576, 1535
Bse1I ACTGG 3 cut(s) 242, 396, 957
Bse21I CCTNAGG 1 cut(s) 1506
BseBI CCWGG 8 cut(s) 109, 156, 312, 490, 585, 783, 1370, 1572
BseCI ATCGAT 1 cut(s) 1296
BseDI CCNNGG 7 cut(s) 154, 220, 266, 781, 1369, 1570, 1571
BseGI GGATG 7 cut(s) 485, 802, 1026, 1083, 1402, 1544, 1704
BseLI CCNNNNNNNGG 3 cut(s) 431, 576, 1535
BseMII CTCAG 5 cut(s) 273, 1140, 1248, 1497, 1572
BseNI ACTGG 3 cut(s) 242, 396, 957
BseRI GAGGAG 1 cut(s) 195
BseXI GCAGC 3 cut(s) 265, 592, 1615
Bsh1236I CGCG 2 cut(s) 391, 514
Bsh1285I CGRYCG 1 cut(s) 1296
BshFI GGCC 2 cut(s) 159, 842
BshNI GGYRCC 1 cut(s) 407
BshVI ATCGAT 1 cut(s) 1296
BsiEI CGRYCG 1 cut(s) 1296
BsiHKAI GWGCWC 1 cut(s) 42
BsiHKCI CYCGRG 1 cut(s) 856
BsiSI CCGG 2 cut(s) 843, 1031
BsiWI CGTACG 1 cut(s) 327
BslFI GGGAC 2 cut(s) 1034, 1387
BslI CCNNNNNNNGG 3 cut(s) 431, 576, 1535
BsmAI GTCTC 3 cut(s) 841, 1597, 1655
BsmFI GGGAC 2 cut(s) 1034, 1387
BsmI GAATGC 1 cut(s) 1668
BsnI GGCC 2 cut(s) 159, 842
BsoBI CYCGRG 1 cut(s) 856
Bsp119I TTCGAA 1 cut(s) 1015
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 5 cut(s) 145, 502, 589, 1293, 1498
Bsp1720I GCTNAGC 1 cut(s) 1021
Bsp19I CCATGG 1 cut(s) 266
BspACI CCGC 3 cut(s) 514, 1224, 1389
BspANI GGCC 2 cut(s) 159, 842
BspCNI CTCAG 5 cut(s) 274, 1139, 1247, 1498, 1571
BspDI ATCGAT 1 cut(s) 1296
BspFNI CGCG 2 cut(s) 391, 514
BspLI GGNNCC 3 cut(s) 409, 436, 739
BspPI GGATC 1 cut(s) 1493
BspQI GCTCTTC 2 cut(s) 47, 119
BspT104I TTCGAA 1 cut(s) 1015
BspT107I GGYRCC 1 cut(s) 407
BsrI ACTGG 3 cut(s) 242, 396, 957
BssECI CCNNGG 7 cut(s) 154, 220, 266, 781, 1369, 1570, 1571
BssMI GATC 5 cut(s) 145, 502, 589, 1293, 1498
BssT1I CCWWGG 1 cut(s) 266
Bst2UI CCWGG 8 cut(s) 109, 156, 312, 490, 585, 783, 1370, 1572
Bst4CI ACNGT 9 cut(s) 224, 297, 361, 380, 623, 721, 1303, 1312, 1657
Bst6I CTCTTC 2 cut(s) 47, 119
BstBAI YACGTR 2 cut(s) 327, 1435
BstBI TTCGAA 1 cut(s) 1015
BstC8I GCNNGC 5 cut(s) 372, 393, 426, 510, 1156
BstDEI CTNAG 9 cut(s) 257, 282, 1021, 1126, 1234, 1506, 1530, 1558, 1749
BstDSI CCRYGG 2 cut(s) 220, 266
BstF5I GGATG 7 cut(s) 485, 802, 1026, 1083, 1402, 1544, 1704
BstFNI CGCG 2 cut(s) 391, 514
BstHHI GCGC 1 cut(s) 514
BstKTI GATC 5 cut(s) 148, 505, 592, 1296, 1501
BstMAI GTCTC 3 cut(s) 841, 1597, 1655
BstMBI GATC 5 cut(s) 145, 502, 589, 1293, 1498
BstMCI CGRYCG 1 cut(s) 1296
BstNI CCWGG 8 cut(s) 109, 156, 312, 490, 585, 783, 1370, 1572
BstNSI RCATGY 3 cut(s) 133, 374, 1693
BstSFI CTRYAG 1 cut(s) 1765
BstUI CGCG 2 cut(s) 391, 514
BstV1I GCAGC 3 cut(s) 265, 592, 1615
BstV2I GAAGAC 1 cut(s) 956
BstX2I RGATCY 2 cut(s) 502, 589
BstXI CCANNNNNNTGG 1 cut(s) 1578
BstYI RGATCY 2 cut(s) 502, 589
Bsu15I ATCGAT 1 cut(s) 1296
Bsu36I CCTNAGG 1 cut(s) 1506
BsuRI GGCC 2 cut(s) 159, 842
BsuTUI ATCGAT 1 cut(s) 1296
BtgI CCRYGG 2 cut(s) 220, 266
BtsCI GGATG 7 cut(s) 485, 802, 1026, 1083, 1402, 1544, 1704
BtsIMutI CAGTG 8 cut(s) 235, 302, 385, 403, 992, 1156, 1275, 1653
Cac8I GCNNGC 5 cut(s) 372, 393, 426, 510, 1156
CfoI GCGC 1 cut(s) 514
Cfr13I GGNCC 2 cut(s) 158, 278
ClaI ATCGAT 1 cut(s) 1296
CseI GACGC 1 cut(s) 397
CsiI ACCWGGT 1 cut(s) 107
Csp6I GTAC 6 cut(s) 328, 493, 973, 1188, 1288, 1313
CviQI GTAC 6 cut(s) 328, 493, 973, 1188, 1288, 1313
DdeI CTNAG 9 cut(s) 257, 282, 1021, 1126, 1234, 1506, 1530, 1558, 1749
DpnI GATC 5 cut(s) 147, 504, 591, 1295, 1500
DpnII GATC 5 cut(s) 145, 502, 589, 1293, 1498
DraIII CACNNNGTG 1 cut(s) 297
EaeI YGGCCR 1 cut(s) 840
Eam1104I CTCTTC 2 cut(s) 47, 119
EarI CTCTTC 2 cut(s) 47, 119
Eco130I CCWWGG 1 cut(s) 266
Eco32I GATATC 1 cut(s) 1195
Eco47I GGWCC 1 cut(s) 278
Eco57I CTGAAG 1 cut(s) 1016
Eco81I CCTNAGG 1 cut(s) 1506
Eco88I CYCGRG 1 cut(s) 856
EcoRI GAATTC 1 cut(s) 1099
EcoRII CCWGG 8 cut(s) 107, 154, 310, 488, 583, 781, 1368, 1570
EcoRV GATATC 1 cut(s) 1195
EcoT14I CCWWGG 1 cut(s) 266
EcoT22I ATGCAT 1 cut(s) 1413
ErhI CCWWGG 1 cut(s) 266
FaqI GGGAC 2 cut(s) 1034, 1387
FauI CCCGC 1 cut(s) 507
FauNDI CATATG 1 cut(s) 1596
FblI GTMKAC 1 cut(s) 1230
Fnu4HI GCNGC 4 cut(s) 254, 581, 1390, 1629
FokI GGATG 7 cut(s) 472, 809, 1013, 1090, 1389, 1551, 1691
Fsp4HI GCNGC 4 cut(s) 254, 581, 1390, 1629
FspBI CTAG 3 cut(s) 1055, 1074, 1665
GlaI GCGC 1 cut(s) 513
GluI GCNGC 4 cut(s) 254, 581, 1390, 1629
GsuI CTGGAG 2 cut(s) 606, 1665
HaeIII GGCC 2 cut(s) 159, 842
HapII CCGG 2 cut(s) 843, 1031
HgaI GACGC 1 cut(s) 397
HhaI GCGC 1 cut(s) 514
Hin6I GCGC 1 cut(s) 512
HinP1I GCGC 1 cut(s) 512
HincII GTYRAC 4 cut(s) 777, 1180, 1308, 1762
HindII GTYRAC 4 cut(s) 777, 1180, 1308, 1762
HindIII AAGCTT 1 cut(s) 1018
HinfI GANTC 9 cut(s) 729, 1118, 1227, 1283, 1349, 1399, 1455, 1554, 1718
HpaI GTTAAC 2 cut(s) 1180, 1308
HpaII CCGG 2 cut(s) 843, 1031
HphI GGTGA 1 cut(s) 97
Hpy166II GTNNAC 6 cut(s) 634, 777, 1180, 1231, 1308, 1762
Hpy188I TCNGA 8 cut(s) 207, 274, 559, 827, 939, 969, 1407, 1553
Hpy188III TCNNGA 3 cut(s) 856, 1505, 1682
Hpy8I GTNNAC 6 cut(s) 634, 777, 1180, 1231, 1308, 1762
Hpy99I CGWCG 1 cut(s) 627
HpyAV CCTTC 4 cut(s) 53, 206, 347, 1269
HpyCH4III ACNGT 9 cut(s) 224, 297, 361, 380, 623, 721, 1303, 1312, 1657
HpyCH4IV ACGT 2 cut(s) 326, 1434
HpyF3I CTNAG 9 cut(s) 257, 282, 1021, 1126, 1234, 1506, 1530, 1558, 1749
HpySE526I ACGT 2 cut(s) 326, 1434
HspAI GCGC 1 cut(s) 512
KspAI GTTAAC 2 cut(s) 1180, 1308
Kzo9I GATC 5 cut(s) 145, 502, 589, 1293, 1498
LguI GCTCTTC 2 cut(s) 47, 119
LmnI GCTCC 2 cut(s) 94, 737
Lsp1109I GCAGC 3 cut(s) 265, 592, 1615
LweI GCATC 5 cut(s) 494, 550, 670, 998, 1398
MabI ACCWGGT 1 cut(s) 107
MaeI CTAG 3 cut(s) 1055, 1074, 1665
MaeII ACGT 2 cut(s) 326, 1434
MaeIII GTNAC 3 cut(s) 898, 1468, 1700
MalI GATC 5 cut(s) 147, 504, 591, 1295, 1500
MboI GATC 5 cut(s) 145, 502, 589, 1293, 1498
MfeI CAATTG 1 cut(s) 699
MflI RGATCY 2 cut(s) 502, 589
MhlI GDGCHC 1 cut(s) 42
MluI ACGCGT 1 cut(s) 389
MlyI GAGTC 2 cut(s) 723, 1236
MmeI TCCRAC 2 cut(s) 412, 706
MnlI CCTC 8 cut(s) 173, 463, 517, 561, 1501, 1512, 1689, 1704
Mph1103I ATGCAT 1 cut(s) 1413
MseI TTAA 7 cut(s) 227, 747, 1179, 1307, 1329, 1337, 1488
MslI CAYNNNNRTG 5 cut(s) 75, 240, 558, 894, 1416
MspI CCGG 2 cut(s) 843, 1031
MunI CAATTG 1 cut(s) 699
Mva1269I GAATGC 1 cut(s) 1668
MvaI CCWGG 8 cut(s) 109, 156, 312, 490, 585, 783, 1370, 1572
MvnI CGCG 2 cut(s) 391, 514
NciI CCSGG 2 cut(s) 844, 1031
NcoI CCATGG 1 cut(s) 266
NdeI CATATG 1 cut(s) 1596
NdeII GATC 5 cut(s) 145, 502, 589, 1293, 1498
NlaIV GGNNCC 3 cut(s) 409, 436, 739
NsiI ATGCAT 1 cut(s) 1413
NspI RCATGY 3 cut(s) 133, 374, 1693
NspV TTCGAA 1 cut(s) 1015
PaeI GCATGC 1 cut(s) 374
PaeR7I CTCGAG 1 cut(s) 856
PasI CCCWGGG 1 cut(s) 1571
PciSI GCTCTTC 2 cut(s) 47, 119
PctI GAATGC 1 cut(s) 1668
PfeI GAWTC 7 cut(s) 1118, 1283, 1349, 1399, 1455, 1554, 1718
Pfl23II CGTACG 1 cut(s) 327
PfoI TCCNGGA 1 cut(s) 1029
PkrI GCNGC 4 cut(s) 255, 582, 1391, 1630
Ple19I CGATCG 1 cut(s) 1296
PleI GAGTC 2 cut(s) 723, 1235
PpsI GAGTC 2 cut(s) 723, 1235
Ppu21I YACGTR 2 cut(s) 327, 1435
PsiI TTATAA 2 cut(s) 1043, 1085
Psp6I CCWGG 8 cut(s) 107, 154, 310, 488, 583, 781, 1368, 1570
PspGI CCWGG 8 cut(s) 107, 154, 310, 488, 583, 781, 1368, 1570
PspLI CGTACG 1 cut(s) 327
PspN4I GGNNCC 3 cut(s) 409, 436, 739
PspPI GGNCC 2 cut(s) 158, 278
PsuI RGATCY 2 cut(s) 502, 589
PvuI CGATCG 1 cut(s) 1296
RsaI GTAC 6 cut(s) 329, 494, 974, 1189, 1289, 1314
RsaNI GTAC 6 cut(s) 328, 493, 973, 1188, 1288, 1313
RseI CAYNNNNRTG 5 cut(s) 75, 240, 558, 894, 1416
SapI GCTCTTC 2 cut(s) 47, 119
SaqAI TTAA 7 cut(s) 227, 747, 1179, 1307, 1329, 1337, 1488
SatI GCNGC 4 cut(s) 254, 581, 1390, 1629
Sau3AI GATC 5 cut(s) 145, 502, 589, 1293, 1498
Sau96I GGNCC 2 cut(s) 158, 278
ScaI AGTACT 1 cut(s) 1189
SchI GAGTC 2 cut(s) 723, 1236
SduI GDGCHC 1 cut(s) 42
SexAI ACCWGGT 1 cut(s) 107
SfaNI GCATC 5 cut(s) 494, 550, 670, 998, 1398
SfcI CTRYAG 1 cut(s) 1765
Sfr274I CTCGAG 1 cut(s) 856
SfuI TTCGAA 1 cut(s) 1015
SinI GGWCC 1 cut(s) 278
SlaI CTCGAG 1 cut(s) 856
SmiMI CAYNNNNRTG 5 cut(s) 75, 240, 558, 894, 1416
SmlI CTYRAG 1 cut(s) 856
SmoI CTYRAG 1 cut(s) 856
SphI GCATGC 1 cut(s) 374
SsiI CCGC 3 cut(s) 514, 1224, 1389
SspI AATATT 1 cut(s) 18
SspMI CTAG 3 cut(s) 1055, 1074, 1665
StyI CCWWGG 1 cut(s) 266
TaaI ACNGT 9 cut(s) 224, 297, 361, 380, 623, 721, 1303, 1312, 1657
TaiI ACGT 2 cut(s) 329, 1437
TaqI TCGA 5 cut(s) 732, 857, 1015, 1292, 1296
TatI WGTACW 3 cut(s) 972, 1187, 1312
TauI GCSGC 1 cut(s) 1392
TfiI GAWTC 7 cut(s) 1118, 1283, 1349, 1399, 1455, 1554, 1718
Tru1I TTAA 7 cut(s) 227, 747, 1179, 1307, 1329, 1337, 1488
Tru9I TTAA 7 cut(s) 227, 747, 1179, 1307, 1329, 1337, 1488
TscAI CASTG 8 cut(s) 242, 302, 385, 403, 999, 1156, 1282, 1660
TseI GCWGC 3 cut(s) 253, 580, 1628
TspRI CASTG 8 cut(s) 242, 302, 385, 403, 999, 1156, 1282, 1660
VpaK11BI GGWCC 1 cut(s) 278
XapI RAATTY 5 cut(s) 100, 189, 319, 1011, 1099
XceI RCATGY 3 cut(s) 133, 374, 1693
XhoI CTCGAG 1 cut(s) 856
XmiI GTMKAC 1 cut(s) 1230
XspI CTAG 3 cut(s) 1055, 1074, 1665
ZrmI AGTACT 1 cut(s) 1189
Zsp2I ATGCAT 1 cut(s) 1413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.