Rorug06G0166600

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000320
Physical Location & Seq
Forward (+)
24095784 .. 24096281
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0166600.1

Sequence Viewer

Length: 498 bp
ATGGAGACGAGCTTCGTTATTAATCTTGGAAACGAAGCTCATGTGCCCATCATATCATTTTCTTCAACAAGCCCTTCTCTTACTTCGATCTGGAGCTCCTACTTTTTCCAATTTGCACAAAATGACTCAATCCAAGTGAAAGTTATAAGTTCCATTGTAAAAGCTTTTGGGTGGAGACAAGTTGTGCCGATCTACATAGACACTGCATACGGCGAGGCAATCATACCATACTTAACTGATGCCTTGGATGAGGTTGGGGCCCGGGTCCCCTACCGTAGTGTCATTTCCTCATCCGCAACAGACGATCAAATTGAAAAAGAGCTTTACAAGTTGATGACAATGCAAACTAGAGTTTTTCTTGTCCACATGACAACCTCACTATGCTCTAGGGTACTTTACAAGGCAAAAGCAATTGGAATGATGAGCGAGGGATATGTTTGGATCATGACCAGTGGGATAACGACTTTTCATTCCTCAATTCCACGGACAGAATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

165

Amino Acids

18.55

Weight (kDa)

5.87

Isoelectric Point (pI)

28.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANF_receptor PF01094 2 - 155 4.1e-40 Receptor family ligand binding region
Peripla_BP_6 PF13458 7 - 146 3.9e-06 Periplasmic binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000320)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g12640 FvH4_2g18980 FvH4_2g18990 FvH4_2g40270 FvH4_2g40270 FvH4_4g22740 FvH4_4g22740 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g36460 FvH4_5g36460 FvH4_6g39950 FvH4_6g39970 FvH4_6g39983 FvH4_6g39990
rosa_chinensis RchiOBHm_Chr2g0154481 RchiOBHm_Chr2g0154511 RchiOBHm_Chr4g0428961 RchiOBHm_Chr6g0252431 RchiOBHm_Chr6g0273301 RchiOBHm_Chr6g0273631 RchiOBHm_Chr6g0273651 RchiOBHm_Chr6g0284751 RchiOBHm_Chr6g0284761 RchiOBHm_Chr6g0300491 RchiOBHm_Chr7g0237421 RchiOBHm_Chr7g0238581
rosa_laevigata RLG00000000906 RLG00000001006 RLG00000007110 RLG00000011333 RLG00000012721 RLG00000013605 RLG00000013626 RLG00000020780 RLG00000020782 RLG00000020783 RLG00000020786
rosa_multiflora Rmu_co8321753.1_g000001 Rmu_sc0000239.1_g000020 Rmu_sc0000686.1_g000001 Rmu_sc0000686.1_g000003 Rmu_sc0000686.1_g000005 Rmu_sc0001476.1_g000011 Rmu_sc0002231.1_g000002 Rmu_sc0002231.1_g000016 Rmu_sc0002690.1_g000003 Rmu_sc0002717.1_g000015 Rmu_sc0002923.1_g000026 Rmu_sc0003808.1_g000016 Rmu_sc0006475.1_g000008 Rmu_sc0006475.1_g000012 Rmu_sc0006475.1_g000018 Rmu_sc0014815.1_g000004 Rmu_sc0015313.1_g000012
rosa_roxburghii Rroxscaffold_2G00094270 Rroxscaffold_2G00094290 Rroxscaffold_3G00222950 Rroxscaffold_3G00224250 Rroxscaffold_5G00370630 Rroxscaffold_7G00167740 Rroxscaffold_7G00184410 Rroxscaffold_7G00195190 Rroxscaffold_7G00195460
rosa_rugosa Rorug02G0444600 Rorug04G0231100 Rorug04G0231200 Rorug06G0074000 Rorug06G0076800 Rorug06G0166400 Rorug06G0166500 Rorug06G0166600 Rorug06G0296400 Rorug07G0303000
rosa_samantha Rh2CG494600 Rh2CG494700 Rh2DG530800 Rh2DG530900 Rh2DG531000 Rh4AG287500 Rh4AG403800 Rh4BG293400 Rh4BG415100 Rh4DG290500 Rh6AG191000 Rh6AG191300 Rh6BG192500 Rh6BG194800 Rh6BG195200 Rh6BG279500 Rh6BG279600 Rh6DG183900 Rh6DG186600 Rh6DG274300 Rh6DG274500 Rh6DG409500 Rh7AG460600 Rh7AG468200 Rh7BG430200
rosa_wichuraiana Rw2G041820 Rw2G041830 Rw2G041840 Rw4G024930 Rw6G016470 Rw6G016720 Rw6G016730 Rw6G024020 Rw6G024030 Rw6G035790 Rw7G038130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 146
AciI CCGC 1 cut(s) 294
AclWI GGATC 1 cut(s) 449
AfaI GTAC 1 cut(s) 393
AgsI TTSAA 2 cut(s) 66, 314
AluBI AGCT 5 cut(s) 12, 38, 96, 164, 322
AluI AGCT 5 cut(s) 12, 38, 96, 164, 322
Alw21I GWGCWC 1 cut(s) 98
Alw26I GTCTC 1 cut(s) 169
AlwI GGATC 1 cut(s) 449
Ama87I CYCGRG 1 cut(s) 261
AoxI GGCC 1 cut(s) 258
ApaI GGGCCC 1 cut(s) 262
AseI ATTAAT 1 cut(s) 21
AspS9I GGNCC 3 cut(s) 258, 259, 265
AsuC2I CCSGG 2 cut(s) 262, 263
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 1 cut(s) 265
BaeGI GKGCMC 2 cut(s) 48, 262
BanII GRGCYC 2 cut(s) 98, 262
Bbv12I GWGCWC 1 cut(s) 98
BccI CCATC 1 cut(s) 56
BceAI ACGGC 1 cut(s) 226
BcnI CCSGG 2 cut(s) 262, 263
BcoDI GTCTC 1 cut(s) 169
BfaI CTAG 2 cut(s) 348, 387
Bme1390I CCNGG 2 cut(s) 262, 263
Bme18I GGWCC 1 cut(s) 265
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 3 cut(s) 258, 259, 265
BmiI GGNNCC 4 cut(s) 259, 260, 266, 267
BmrFI CCNGG 2 cut(s) 262, 263
BmsI GCATC 1 cut(s) 229
BpmI CTGGAG 1 cut(s) 112
BpuMI CCSGG 2 cut(s) 262, 263
BsaJI CCNNGG 3 cut(s) 243, 261, 482
Bse1I ACTGG 1 cut(s) 450
BseDI CCNNGG 3 cut(s) 243, 261, 482
BseGI GGATG 2 cut(s) 253, 290
BseNI ACTGG 1 cut(s) 450
BseSI GKGCMC 2 cut(s) 48, 262
BshFI GGCC 1 cut(s) 260
BsiHKAI GWGCWC 1 cut(s) 98
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 1 cut(s) 262
BslFI GGGAC 1 cut(s) 251
BsmAI GTCTC 1 cut(s) 169
BsmFI GGGAC 1 cut(s) 251
BsnI GGCC 1 cut(s) 260
BsoBI CYCGRG 1 cut(s) 261
Bsp120I GGGCCC 1 cut(s) 258
Bsp1286I GDGCHC 3 cut(s) 48, 98, 262
Bsp143I GATC 4 cut(s) 87, 189, 304, 441
BspACI CCGC 1 cut(s) 294
BspANI GGCC 1 cut(s) 260
BspHI TCATGA 1 cut(s) 444
BspLI GGNNCC 4 cut(s) 259, 260, 266, 267
BspPI GGATC 1 cut(s) 449
BsrI ACTGG 1 cut(s) 450
BssECI CCNNGG 3 cut(s) 243, 261, 482
BssMI GATC 4 cut(s) 87, 189, 304, 441
BssT1I CCWWGG 1 cut(s) 243
Bst4CI ACNGT 1 cut(s) 275
BstDSI CCRYGG 1 cut(s) 482
BstF5I GGATG 2 cut(s) 253, 290
BstKTI GATC 4 cut(s) 90, 192, 307, 444
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 4 cut(s) 87, 189, 304, 441
BstSCI CCNGG 2 cut(s) 260, 261
BstSLI GKGCMC 2 cut(s) 48, 262
BsuRI GGCC 1 cut(s) 260
BtgI CCRYGG 1 cut(s) 482
BtsCI GGATG 2 cut(s) 253, 290
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 2 cut(s) 201, 457
CciI TCATGA 1 cut(s) 444
Cfr13I GGNCC 3 cut(s) 258, 259, 265
Cfr9I CCCGGG 1 cut(s) 261
Csp6I GTAC 1 cut(s) 392
CviAII CATG 3 cut(s) 41, 367, 445
CviJI RGCY 7 cut(s) 12, 38, 72, 96, 164, 260, 322
CviKI_1 RGCY 7 cut(s) 12, 38, 72, 96, 164, 260, 322
CviQI GTAC 1 cut(s) 392
DpnI GATC 4 cut(s) 89, 191, 306, 443
DpnII GATC 4 cut(s) 87, 189, 304, 441
Ecl136II GAGCTC 1 cut(s) 96
Eco130I CCWWGG 1 cut(s) 243
Eco24I GRGCYC 2 cut(s) 98, 262
Eco47I GGWCC 1 cut(s) 265
Eco53kI GAGCTC 1 cut(s) 96
Eco88I CYCGRG 1 cut(s) 261
EcoICRI GAGCTC 1 cut(s) 96
EcoO109I RGGNCCY 2 cut(s) 258, 265
EcoT14I CCWWGG 1 cut(s) 243
EcoT38I GRGCYC 2 cut(s) 98, 262
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 3 cut(s) 44, 370, 448
FaqI GGGAC 1 cut(s) 251
FatI CATG 3 cut(s) 40, 366, 444
FokI GGATG 2 cut(s) 260, 277
FriOI GRGCYC 2 cut(s) 98, 262
FspBI CTAG 2 cut(s) 348, 387
GsuI CTGGAG 1 cut(s) 112
HaeIII GGCC 1 cut(s) 260
HapII CCGG 1 cut(s) 262
Hin1II CATG 3 cut(s) 44, 370, 448
HindIII AAGCTT 1 cut(s) 162
HinfI GANTC 1 cut(s) 125
HpaII CCGG 1 cut(s) 262
Hpy166II GTNNAC 1 cut(s) 364
Hpy188III TCNNGA 2 cut(s) 91, 445
Hpy8I GTNNAC 1 cut(s) 364
HpyAV CCTTC 1 cut(s) 84
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4V TGCA 3 cut(s) 116, 206, 343
Hsp92II CATG 3 cut(s) 44, 370, 448
KflI GGGWCCC 1 cut(s) 265
Kzo9I GATC 4 cut(s) 87, 189, 304, 441
LmnI GCTCC 2 cut(s) 93, 101
LpnPI CCDG 3 cut(s) 76, 275, 463
LweI GCATC 1 cut(s) 229
MaeI CTAG 2 cut(s) 348, 387
MalI GATC 4 cut(s) 89, 191, 306, 443
MboI GATC 4 cut(s) 87, 189, 304, 441
MboII GAAGA 1 cut(s) 54
MfeI CAATTG 1 cut(s) 411
MhlI GDGCHC 3 cut(s) 48, 98, 262
MluCI AATT 4 cut(s) 110, 309, 411, 477
MlyI GAGTC 1 cut(s) 119
MnlI CCTC 6 cut(s) 208, 244, 298, 385, 421, 484
MseI TTAA 2 cut(s) 21, 233
MspI CCGG 1 cut(s) 262
MspR9I CCNGG 2 cut(s) 262, 263
MunI CAATTG 1 cut(s) 411
NciI CCSGG 2 cut(s) 262, 263
NdeII GATC 4 cut(s) 87, 189, 304, 441
NlaIII CATG 3 cut(s) 44, 370, 448
NlaIV GGNNCC 4 cut(s) 259, 260, 266, 267
PagI TCATGA 1 cut(s) 444
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PpuMI RGGWCCY 1 cut(s) 265
PshBI ATTAAT 1 cut(s) 21
PsiI TTATAA 1 cut(s) 146
Psp124BI GAGCTC 1 cut(s) 98
Psp5II RGGWCCY 1 cut(s) 265
PspN4I GGNNCC 4 cut(s) 259, 260, 266, 267
PspOMI GGGCCC 1 cut(s) 258
PspPI GGNCC 3 cut(s) 258, 259, 265
PspPPI RGGWCCY 1 cut(s) 265
RsaI GTAC 1 cut(s) 393
RsaNI GTAC 1 cut(s) 392
SacI GAGCTC 1 cut(s) 98
SaqAI TTAA 2 cut(s) 21, 233
Sau3AI GATC 4 cut(s) 87, 189, 304, 441
Sau96I GGNCC 3 cut(s) 258, 259, 265
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 2 cut(s) 262, 263
SduI GDGCHC 3 cut(s) 48, 98, 262
SetI ASST 7 cut(s) 14, 40, 98, 166, 255, 324, 377
SfaNI GCATC 1 cut(s) 229
SinI GGWCC 1 cut(s) 265
SmaI CCCGGG 1 cut(s) 263
Sse9I AATT 4 cut(s) 110, 309, 411, 477
SsiI CCGC 1 cut(s) 294
SspI AATATT 1 cut(s) 494
SspMI CTAG 2 cut(s) 348, 387
SstI GAGCTC 1 cut(s) 98
StyD4I CCNGG 2 cut(s) 260, 261
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 1 cut(s) 275
TaqI TCGA 1 cut(s) 86
TasI AATT 4 cut(s) 110, 309, 411, 477
Tru1I TTAA 2 cut(s) 21, 233
Tru9I TTAA 2 cut(s) 21, 233
TscAI CASTG 2 cut(s) 208, 457
TspDTI ATGAA 1 cut(s) 458
TspMI CCCGGG 1 cut(s) 261
TspRI CASTG 2 cut(s) 208, 457
VpaK11BI GGWCC 1 cut(s) 265
VspI ATTAAT 1 cut(s) 21
XmaI CCCGGG 1 cut(s) 261
XspI CTAG 2 cut(s) 348, 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.