Rorug06G0074000

Belongs to the multicopper oxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000320
Physical Location & Seq
Reverse (-)
9873935 .. 9875438
1504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0074000.1

Sequence Viewer

Length: 1101 bp
ATGAAAATCACATTAACCAAATTAAAGTCTTCAACTCCCTCCACTCACACCCTCTTCACTCCCCCAATGAAGACCACCACCACCACCACAACCACCACCGCCAACTCCAACACCAAGCTCATCCTCCTCCACCCTTCCTCCAACTTCCACAAACCCACCACCAATGCCGCAGCTTCCGTCTCCCACCGCCTATGGCTCCTCTTCTTCTTCACCTTCTTCACTCTCGCTTTCGCCCTCGCCCTCATCAACACCACCCTCCCCAACCCCACCTCTCTCTCCCCCACCTCCACTATCCCCCTCCCGCCCTCCGTCGCCGACGCGCTTCTCCACTACGCCATTTCCTCTAACGCCTCATCCGCATCGTCCCACATGTCCCTCTCCGAAATCACAGCCATCTCCACGGCCCTGACTGCCTGCTCGCACAGGTGTAATTTCCTCGTCTTCGGCCTCACCCACGAGTCCCTCCTCTGGCACGCGCTCAATCTCAACGGCCGTACCGTCTTCCTCGACGACAATGAGTTCCTCATCTCCAAGTTCGAACAGTCACACCCCTACCACGGAATCGAAGCGTACGACGTGTCGTTCGCCACCGCGGTCAAGGACTTCAAGTCCCTCCTCTCCGCCACCAAGTCTCAAGTCCAAAACGACTGTCGTCCGGTGCAGAACTTGCTGTTTTCCGACTGCAAGCTCGGGATCAACGACTTGCCGAATCACATATACCAAGTCCCTTGGGATGTGATTTTGGTCGACGGGCCAAGTGGGTATTCTCCGTCGTCGCCGGGTCGGATGGCGCCGATTTTCACCGCCGGAGTTTTGGCCCGGAGCAAGAAGGGCGGCGGGGACAAGACCCATGTTTTTGTTCACGATTTTTCTAGAGAGGTTGAGCAGATTAGTAGCGACGAGTTTCTTTGCCGGGAAAACCTGGTGCAGGCTGTGGATTTGTTGGGCCATTTTGTTGTGGAGAAAATGGAAGATAACAGATTTGAGTTTTGTAGAAACTCGACATCATCATCATTATCACGATCTTCGTCTAAATCATCAGGGAATGAAGACGGTGATGGTGATGGTGATGGTGATGGTGATGATGATGAAGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

366

Amino Acids

39.92

Weight (kDa)

5.62

Isoelectric Point (pI)

42.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IRX15_IRX15L_GXM PF21729 128 - 318 2.7e-76 IRX15/IRX15L/GXM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000320)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g12640 FvH4_2g18980 FvH4_2g18990 FvH4_2g40270 FvH4_2g40270 FvH4_4g22740 FvH4_4g22740 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g36460 FvH4_5g36460 FvH4_6g39950 FvH4_6g39970 FvH4_6g39983 FvH4_6g39990
rosa_chinensis RchiOBHm_Chr2g0154481 RchiOBHm_Chr2g0154511 RchiOBHm_Chr4g0428961 RchiOBHm_Chr6g0252431 RchiOBHm_Chr6g0273301 RchiOBHm_Chr6g0273631 RchiOBHm_Chr6g0273651 RchiOBHm_Chr6g0284751 RchiOBHm_Chr6g0284761 RchiOBHm_Chr6g0300491 RchiOBHm_Chr7g0237421 RchiOBHm_Chr7g0238581
rosa_laevigata RLG00000000906 RLG00000001006 RLG00000007110 RLG00000011333 RLG00000012721 RLG00000013605 RLG00000013626 RLG00000020780 RLG00000020782 RLG00000020783 RLG00000020786
rosa_multiflora Rmu_co8321753.1_g000001 Rmu_sc0000239.1_g000020 Rmu_sc0000686.1_g000001 Rmu_sc0000686.1_g000003 Rmu_sc0000686.1_g000005 Rmu_sc0001476.1_g000011 Rmu_sc0002231.1_g000002 Rmu_sc0002231.1_g000016 Rmu_sc0002690.1_g000003 Rmu_sc0002717.1_g000015 Rmu_sc0002923.1_g000026 Rmu_sc0003808.1_g000016 Rmu_sc0006475.1_g000008 Rmu_sc0006475.1_g000012 Rmu_sc0006475.1_g000018 Rmu_sc0014815.1_g000004 Rmu_sc0015313.1_g000012
rosa_roxburghii Rroxscaffold_2G00094270 Rroxscaffold_2G00094290 Rroxscaffold_3G00222950 Rroxscaffold_3G00224250 Rroxscaffold_5G00370630 Rroxscaffold_7G00167740 Rroxscaffold_7G00184410 Rroxscaffold_7G00195190 Rroxscaffold_7G00195460
rosa_rugosa Rorug02G0444600 Rorug04G0231100 Rorug04G0231200 Rorug06G0074000 Rorug06G0076800 Rorug06G0166400 Rorug06G0166500 Rorug06G0166600 Rorug06G0296400 Rorug07G0303000
rosa_samantha Rh2CG494600 Rh2CG494700 Rh2DG530800 Rh2DG530900 Rh2DG531000 Rh4AG287500 Rh4AG403800 Rh4BG293400 Rh4BG415100 Rh4DG290500 Rh6AG191000 Rh6AG191300 Rh6BG192500 Rh6BG194800 Rh6BG195200 Rh6BG279500 Rh6BG279600 Rh6DG183900 Rh6DG186600 Rh6DG274300 Rh6DG274500 Rh6DG409500 Rh7AG460600 Rh7AG468200 Rh7BG430200
rosa_wichuraiana Rw2G041820 Rw2G041830 Rw2G041840 Rw4G024930 Rw6G016470 Rw6G016720 Rw6G016730 Rw6G024020 Rw6G024030 Rw6G035790 Rw7G038130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 790
AccI GTMKAC 1 cut(s) 747
AccII CGCG 3 cut(s) 320, 476, 593
AclWI GGATC 1 cut(s) 701
AcoI YGGCCR 1 cut(s) 490
AcyI GRCGYC 1 cut(s) 791
AfaI GTAC 2 cut(s) 496, 572
AfiI CCNNNNNNNGG 3 cut(s) 468, 557, 928
AflIII ACRYGT 2 cut(s) 369, 576
AgsI TTSAA 2 cut(s) 33, 607
AhdI GACNNNNNGTC 1 cut(s) 607
AjiI CACGTC 1 cut(s) 577
AjnI CCWGG 1 cut(s) 921
AjuI GAANNNNNNNTTGG 2 cut(s) 748, 780
AluBI AGCT 3 cut(s) 118, 173, 688
AluI AGCT 3 cut(s) 118, 173, 688
Alw26I GTCTC 2 cut(s) 184, 636
AlwI GGATC 1 cut(s) 701
Ama87I CYCGRG 1 cut(s) 689
AoxI GGCC 6 cut(s) 402, 445, 490, 752, 816, 946
ApeKI GCWGC 1 cut(s) 170
ArsI GACNNNNNNTTYG 4 cut(s) 566, 598, 634, 666
AspLEI GCGC 3 cut(s) 322, 478, 793
AspS9I GGNCC 4 cut(s) 403, 752, 817, 946
AsuC2I CCSGG 3 cut(s) 780, 820, 914
AsuHPI GGTGA 8 cut(s) 202, 442, 793, 1067, 1073, 1079, 1085, 1091
AsuII TTCGAA 1 cut(s) 537
AvaI CYCGRG 1 cut(s) 689
BaeI ACNNNNGTAYC 2 cut(s) 478, 511
BanI GGYRCC 1 cut(s) 790
BauI CACGAG 1 cut(s) 455
BbsI GAAGAC 5 cut(s) 21, 77, 433, 493, 1056
BbvI GCAGC 1 cut(s) 182
BccI CCATC 6 cut(s) 401, 781, 1052, 1058, 1064, 1070
BceAI ACGGC 3 cut(s) 417, 477, 505
BciT130I CCWGG 1 cut(s) 923
BcnI CCSGG 3 cut(s) 780, 820, 914
BcoDI GTCTC 2 cut(s) 184, 636
BfaI CTAG 1 cut(s) 873
BfoI RGCGCY 1 cut(s) 794
BisI GCNGC 3 cut(s) 168, 171, 835
BlsI GCNGC 3 cut(s) 169, 172, 836
Bme1390I CCNGG 4 cut(s) 780, 820, 914, 923
BmeRI GACNNNNNGTC 1 cut(s) 607
BmeT110I CYCGRG 1 cut(s) 689
BmgBI CACGTC 1 cut(s) 577
BmgT120I GGNCC 4 cut(s) 403, 752, 817, 946
BmiI GGNNCC 2 cut(s) 197, 792
BmrFI CCNGG 4 cut(s) 780, 820, 914, 923
BmsI GCATC 1 cut(s) 368
BoxI GACNNNNGTC 1 cut(s) 651
BpiI GAAGAC 5 cut(s) 21, 77, 433, 493, 1056
Bpu14I TTCGAA 1 cut(s) 537
BpuEI CTTGAG 1 cut(s) 618
BpuMI CCSGG 3 cut(s) 780, 820, 914
BsaHI GRCGYC 1 cut(s) 791
BsaJI CCNNGG 4 cut(s) 399, 556, 591, 728
BsaWI WCCGGW 1 cut(s) 655
BsaXI ACNNNNNCTCC 2 cut(s) 122, 152
Bsc4I CCNNNNNNNGG 3 cut(s) 468, 557, 928
BseBI CCWGG 1 cut(s) 923
BseDI CCNNGG 4 cut(s) 399, 556, 591, 728
BseGI GGATG 4 cut(s) 120, 353, 739, 792
BseLI CCNNNNNNNGG 3 cut(s) 468, 557, 928
BseRI GAGGAG 4 cut(s) 116, 188, 455, 605
BseX3I CGGCCG 1 cut(s) 490
BseXI GCAGC 1 cut(s) 182
BsgI GTGCAG 2 cut(s) 680, 947
Bsh1236I CGCG 3 cut(s) 320, 476, 593
Bsh1285I CGRYCG 1 cut(s) 493
BshFI GGCC 6 cut(s) 404, 447, 492, 754, 818, 948
BshNI GGYRCC 1 cut(s) 790
BsiEI CGRYCG 1 cut(s) 493
BsiHKCI CYCGRG 1 cut(s) 689
BsiSI CCGG 5 cut(s) 656, 779, 807, 820, 913
BsiWI CGTACG 1 cut(s) 570
BslFI GGGAC 6 cut(s) 349, 358, 445, 595, 710, 854
BslI CCNNNNNNNGG 3 cut(s) 468, 557, 928
BsmAI GTCTC 2 cut(s) 184, 636
BsmBI CGTCTC 1 cut(s) 184
BsmFI GGGAC 6 cut(s) 349, 358, 445, 595, 710, 854
BsnI GGCC 6 cut(s) 404, 447, 492, 754, 818, 948
BsoBI CYCGRG 1 cut(s) 689
Bsp119I TTCGAA 1 cut(s) 537
Bsp143I GATC 2 cut(s) 693, 1022
BspANI GGCC 6 cut(s) 404, 447, 492, 754, 818, 948
BspFNI CGCG 3 cut(s) 320, 476, 593
BspLI GGNNCC 2 cut(s) 197, 792
BspPI GGATC 1 cut(s) 701
BspT104I TTCGAA 1 cut(s) 537
BspT107I GGYRCC 1 cut(s) 790
BssECI CCNNGG 4 cut(s) 399, 556, 591, 728
BssMI GATC 2 cut(s) 693, 1022
BssNI GRCGYC 1 cut(s) 791
BssSI CACGAG 1 cut(s) 455
BssT1I CCWWGG 1 cut(s) 728
Bst2BI CACGAG 1 cut(s) 455
Bst2UI CCWGG 1 cut(s) 923
Bst4CI ACNGT 4 cut(s) 499, 543, 650, 1055
Bst6I CTCTTC 2 cut(s) 59, 206
BstACI GRCGYC 1 cut(s) 791
BstAPI GCANNNNNTGC 1 cut(s) 667
BstBI TTCGAA 1 cut(s) 537
BstC8I GCNNGC 5 cut(s) 415, 419, 474, 686, 930
BstDSI CCRYGG 3 cut(s) 399, 556, 591
BstENI CCTNNNNNAGG 1 cut(s) 926
BstF5I GGATG 4 cut(s) 120, 353, 739, 792
BstFNI CGCG 3 cut(s) 320, 476, 593
BstH2I RGCGCY 1 cut(s) 794
BstHHI GCGC 3 cut(s) 322, 478, 793
BstKTI GATC 2 cut(s) 696, 1025
BstMAI GTCTC 2 cut(s) 184, 636
BstMBI GATC 2 cut(s) 693, 1022
BstMCI CGRYCG 1 cut(s) 493
BstMWI GCNNNNNNNGC 4 cut(s) 356, 410, 667, 831
BstNI CCWGG 1 cut(s) 923
BstNSI RCATGY 1 cut(s) 373
BstPAI GACNNNNGTC 1 cut(s) 651
BstSCI CCNGG 4 cut(s) 778, 818, 912, 921
BstUI CGCG 3 cut(s) 320, 476, 593
BstV1I GCAGC 1 cut(s) 182
BstV2I GAAGAC 5 cut(s) 21, 77, 433, 493, 1056
BstZI CGGCCG 1 cut(s) 490
BsuRI GGCC 6 cut(s) 404, 447, 492, 754, 818, 948
BtgI CCRYGG 3 cut(s) 399, 556, 591
BtrI CACGTC 1 cut(s) 577
BtsCI GGATG 4 cut(s) 120, 353, 739, 792
Cac8I GCNNGC 5 cut(s) 415, 419, 474, 686, 930
CfoI GCGC 3 cut(s) 322, 478, 793
Cfr13I GGNCC 4 cut(s) 403, 752, 817, 946
Cfr42I CCGCGG 1 cut(s) 594
CseI GACGC 1 cut(s) 326
CsiI ACCWGGT 1 cut(s) 921
Csp6I GTAC 2 cut(s) 495, 571
CviAII CATG 2 cut(s) 370, 851
CviQI GTAC 2 cut(s) 495, 571
DinI GGCGCC 1 cut(s) 792
DpnI GATC 2 cut(s) 695, 1024
DpnII GATC 2 cut(s) 693, 1022
DriI GACNNNNNGTC 1 cut(s) 607
EaeI YGGCCR 1 cut(s) 490
EagI CGGCCG 1 cut(s) 490
Eam1104I CTCTTC 2 cut(s) 59, 206
Eam1105I GACNNNNNGTC 1 cut(s) 607
EarI CTCTTC 2 cut(s) 59, 206
EciI GGCGGA 1 cut(s) 610
EclXI CGGCCG 1 cut(s) 490
Eco130I CCWWGG 1 cut(s) 728
Eco52I CGGCCG 1 cut(s) 490
Eco88I CYCGRG 1 cut(s) 689
EcoNI CCTNNNNNAGG 1 cut(s) 926
EcoRII CCWGG 1 cut(s) 921
EcoT14I CCWWGG 1 cut(s) 728
EgeI GGCGCC 1 cut(s) 792
EheI GGCGCC 1 cut(s) 792
ErhI CCWWGG 1 cut(s) 728
Esp3I CGTCTC 1 cut(s) 184
FaeI CATG 2 cut(s) 373, 854
FaiI YATR 5 cut(s) 193, 371, 716, 718, 852
FaqI GGGAC 6 cut(s) 349, 358, 445, 595, 710, 854
FatI CATG 2 cut(s) 369, 850
FauI CCCGC 2 cut(s) 309, 830
FblI GTMKAC 1 cut(s) 747
Fnu4HI GCNGC 3 cut(s) 168, 171, 835
FokI GGATG 4 cut(s) 107, 340, 746, 799
Fsp4HI GCNGC 3 cut(s) 168, 171, 835
FspBI CTAG 1 cut(s) 873
GlaI GCGC 3 cut(s) 321, 477, 792
GluI GCNGC 3 cut(s) 168, 171, 835
HaeII RGCGCY 1 cut(s) 794
HaeIII GGCC 6 cut(s) 404, 447, 492, 754, 818, 948
HapII CCGG 5 cut(s) 656, 779, 807, 820, 913
HgaI GACGC 1 cut(s) 326
HhaI GCGC 3 cut(s) 322, 478, 793
Hin1I GRCGYC 1 cut(s) 791
Hin1II CATG 2 cut(s) 373, 854
Hin6I GCGC 3 cut(s) 320, 476, 791
HinP1I GCGC 3 cut(s) 320, 476, 791
HincII GTYRAC 1 cut(s) 748
HindII GTYRAC 1 cut(s) 748
HinfI GANTC 3 cut(s) 458, 561, 709
HpaII CCGG 5 cut(s) 656, 779, 807, 820, 913
HphI GGTGA 8 cut(s) 202, 442, 793, 1067, 1073, 1079, 1085, 1091
Hpy166II GTNNAC 2 cut(s) 748, 862
Hpy188I TCNGA 3 cut(s) 382, 679, 786
Hpy188III TCNNGA 4 cut(s) 691, 863, 873, 1020
Hpy8I GTNNAC 2 cut(s) 748, 862
Hpy99I CGWCG 8 cut(s) 314, 320, 512, 578, 752, 775, 778, 902
HpyAV CCTTC 3 cut(s) 144, 223, 823
HpyCH4III ACNGT 4 cut(s) 499, 543, 650, 1055
HpyCH4IV ACGT 1 cut(s) 576
HpyCH4V TGCA 3 cut(s) 661, 684, 928
HpyF10VI GCNNNNNNNGC 4 cut(s) 356, 410, 667, 831
HpySE526I ACGT 1 cut(s) 576
Hsp92I GRCGYC 1 cut(s) 791
Hsp92II CATG 2 cut(s) 373, 854
HspAI GCGC 3 cut(s) 320, 476, 791
KasI GGCGCC 1 cut(s) 790
KspI CCGCGG 1 cut(s) 594
Kzo9I GATC 2 cut(s) 693, 1022
LmnI GCTCC 2 cut(s) 201, 822
Lsp1109I GCAGC 1 cut(s) 182
LweI GCATC 1 cut(s) 368
MabI ACCWGGT 1 cut(s) 921
MaeI CTAG 1 cut(s) 873
MaeII ACGT 1 cut(s) 576
MaeIII GTNAC 1 cut(s) 543
MalI GATC 2 cut(s) 695, 1024
MboI GATC 2 cut(s) 693, 1022
MluCI AATT 2 cut(s) 20, 430
Mly113I GGCGCC 1 cut(s) 791
MlyI GAGTC 1 cut(s) 467
MmeI TCCRAC 4 cut(s) 132, 165, 702, 764
MseI TTAA 3 cut(s) 14, 23, 1099
MspA1I CMGCKG 1 cut(s) 593
MspI CCGG 5 cut(s) 656, 779, 807, 820, 913
MspR9I CCNGG 4 cut(s) 780, 820, 914, 923
MvaI CCWGG 1 cut(s) 923
MvnI CGCG 3 cut(s) 320, 476, 593
MwoI GCNNNNNNNGC 4 cut(s) 356, 410, 667, 831
NarI GGCGCC 1 cut(s) 791
NciI CCSGG 3 cut(s) 780, 820, 914
NdeII GATC 2 cut(s) 693, 1022
NlaIII CATG 2 cut(s) 373, 854
NlaIV GGNNCC 2 cut(s) 197, 792
NmuCI GTSAC 1 cut(s) 543
NspI RCATGY 1 cut(s) 373
NspV TTCGAA 1 cut(s) 537
PciI ACATGT 1 cut(s) 369
PcsI WCGNNNNNNNCGW 3 cut(s) 495, 570, 696
PfeI GAWTC 2 cut(s) 561, 709
Pfl23II CGTACG 1 cut(s) 570
PkrI GCNGC 3 cut(s) 169, 172, 836
PleI GAGTC 1 cut(s) 466
PluTI GGCGCC 1 cut(s) 794
PpsI GAGTC 1 cut(s) 466
PscI ACATGT 1 cut(s) 369
PshAI GACNNNNGTC 1 cut(s) 651
Psp6I CCWGG 1 cut(s) 921
PspGI CCWGG 1 cut(s) 921
PspLI CGTACG 1 cut(s) 570
PspN4I GGNNCC 2 cut(s) 197, 792
PspPI GGNCC 4 cut(s) 403, 752, 817, 946
RsaI GTAC 2 cut(s) 496, 572
RsaNI GTAC 2 cut(s) 495, 571
SacII CCGCGG 1 cut(s) 594
SalI GTCGAC 1 cut(s) 746
SaqAI TTAA 3 cut(s) 14, 23, 1099
SatI GCNGC 3 cut(s) 168, 171, 835
Sau3AI GATC 2 cut(s) 693, 1022
Sau96I GGNCC 4 cut(s) 403, 752, 817, 946
SchI GAGTC 1 cut(s) 467
ScrFI CCNGG 4 cut(s) 780, 820, 914, 923
SexAI ACCWGGT 1 cut(s) 921
SfaNI GCATC 1 cut(s) 368
SfoI GGCGCC 1 cut(s) 792
Sfr303I CCGCGG 1 cut(s) 594
SfuI TTCGAA 1 cut(s) 537
SgrBI CCGCGG 1 cut(s) 594
SmlI CTYRAG 1 cut(s) 633
SmoI CTYRAG 1 cut(s) 633
Sse9I AATT 2 cut(s) 20, 430
SspDI GGCGCC 1 cut(s) 790
SspMI CTAG 1 cut(s) 873
StyD4I CCNGG 4 cut(s) 778, 818, 912, 921
StyI CCWWGG 1 cut(s) 728
TaaI ACNGT 4 cut(s) 499, 543, 650, 1055
TaiI ACGT 1 cut(s) 579
TaqI TCGA 5 cut(s) 507, 537, 564, 747, 1001
TasI AATT 2 cut(s) 20, 430
TauI GCSGC 2 cut(s) 170, 837
TfiI GAWTC 2 cut(s) 561, 709
Tru1I TTAA 3 cut(s) 14, 23, 1099
Tru9I TTAA 3 cut(s) 14, 23, 1099
TseFI GTSAC 1 cut(s) 543
TseI GCWGC 1 cut(s) 170
Tsp45I GTSAC 1 cut(s) 543
TspDTI ATGAA 3 cut(s) 17, 83, 1062
TspGWI ACGGA 4 cut(s) 166, 298, 573, 759
XagI CCTNNNNNAGG 1 cut(s) 926
XbaI TCTAGA 1 cut(s) 872
XceI RCATGY 1 cut(s) 373
XmiI GTMKAC 1 cut(s) 747
XspI CTAG 1 cut(s) 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.