RLG00000020786

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000320
Physical Location & Seq
Reverse (-)
68709314 .. 68711069
1756 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020786

Sequence Viewer

Length: 816 bp
ATGAAGAGTACTACTAGTCCAGTACTGATGTCGACACAGTTTCTGGTGTTCGCTGCTCTTATTATCATCCTACCGCTCTTCATCTCTCTGGCTCGAGCAGAAGTTCATTACTACGATTTTATAGTTGACGAGTGTCTGGACCCTGCAACCAACTTTAACTTACCCATAGCAGCTGGTTACACAATTAATGGCCGGCTTGGAGATTTTTCTCCATTCTCCAAAAATACAACGTATCGTCGTAAGGTGTACTATGGCAAGACATATCTTCTTCGGATAGTGAACGCAAACATCGATGTAGAGTTTTACTTTGCCATTGCTGAACACAACCTCACTGTGGTTGGCTTGGACGGCTCCTATACCAAACCCATCAACACAAACTATATAGTGATAACCCCTGGACACACAATGGACGTGTTGCTCAACACAAATTCGGCTCTGGGGAGCTATTACATGGTCGGAAGAGAATACATAAGTGCTACAGTTGACACTGTATCTGACTCTGCGAATGATGCTATTGCAATCCTTGAATATAATGGCAACTATACCACTTCCGAAGCTCCGTTATTTCCCCAACAAATTCCCAGTTCCTTATCCAAAACAGACGCATTCAACTTCTACGGAAATATTAGAAGCTTAGCCACCCCAGAGTATCCTATAAATGTCCCAAAAGAGAGCGACATAACTACCAAAATGTACATAACAGCTTCCGCCAACGCTCTTGACGTACTGTACTCCAGATTTGGGTCGCTCATGCGTAAACATATCTTTTGCTGCAATGTTGAACATCTCAACTTCATATTCAGTTCAGATTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

272

Amino Acids

30.3

Weight (kDa)

5.32

Isoelectric Point (pI)

36.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase PF00394 54 - 180 1.3e-26 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000320)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g12640 FvH4_2g18980 FvH4_2g18990 FvH4_2g40270 FvH4_2g40270 FvH4_4g22740 FvH4_4g22740 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g36460 FvH4_5g36460 FvH4_6g39950 FvH4_6g39970 FvH4_6g39983 FvH4_6g39990
rosa_chinensis RchiOBHm_Chr2g0154481 RchiOBHm_Chr2g0154511 RchiOBHm_Chr4g0428961 RchiOBHm_Chr6g0252431 RchiOBHm_Chr6g0273301 RchiOBHm_Chr6g0273631 RchiOBHm_Chr6g0273651 RchiOBHm_Chr6g0284751 RchiOBHm_Chr6g0284761 RchiOBHm_Chr6g0300491 RchiOBHm_Chr7g0237421 RchiOBHm_Chr7g0238581
rosa_laevigata RLG00000000906 RLG00000001006 RLG00000007110 RLG00000011333 RLG00000012721 RLG00000013605 RLG00000013626 RLG00000020780 RLG00000020782 RLG00000020783 RLG00000020786
rosa_multiflora Rmu_co8321753.1_g000001 Rmu_sc0000239.1_g000020 Rmu_sc0000686.1_g000001 Rmu_sc0000686.1_g000003 Rmu_sc0000686.1_g000005 Rmu_sc0001476.1_g000011 Rmu_sc0002231.1_g000002 Rmu_sc0002231.1_g000016 Rmu_sc0002690.1_g000003 Rmu_sc0002717.1_g000015 Rmu_sc0002923.1_g000026 Rmu_sc0003808.1_g000016 Rmu_sc0006475.1_g000008 Rmu_sc0006475.1_g000012 Rmu_sc0006475.1_g000018 Rmu_sc0014815.1_g000004 Rmu_sc0015313.1_g000012
rosa_roxburghii Rroxscaffold_2G00094270 Rroxscaffold_2G00094290 Rroxscaffold_3G00222950 Rroxscaffold_3G00224250 Rroxscaffold_5G00370630 Rroxscaffold_7G00167740 Rroxscaffold_7G00184410 Rroxscaffold_7G00195190 Rroxscaffold_7G00195460
rosa_rugosa Rorug02G0444600 Rorug04G0231100 Rorug04G0231200 Rorug06G0074000 Rorug06G0076800 Rorug06G0166400 Rorug06G0166500 Rorug06G0166600 Rorug06G0296400 Rorug07G0303000
rosa_samantha Rh2CG494600 Rh2CG494700 Rh2DG530800 Rh2DG530900 Rh2DG531000 Rh4AG287500 Rh4AG403800 Rh4BG293400 Rh4BG415100 Rh4DG290500 Rh6AG191000 Rh6AG191300 Rh6BG192500 Rh6BG194800 Rh6BG195200 Rh6BG279500 Rh6BG279600 Rh6DG183900 Rh6DG186600 Rh6DG274300 Rh6DG274500 Rh6DG409500 Rh7AG460600 Rh7AG468200 Rh7BG430200
rosa_wichuraiana Rw2G041820 Rw2G041830 Rw2G041840 Rw4G024930 Rw6G016470 Rw6G016720 Rw6G016730 Rw6G024020 Rw6G024030 Rw6G035790 Rw7G038130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 76
AccI GTMKAC 1 cut(s) 32
AciI CCGC 2 cut(s) 74, 708
AcoI YGGCCR 1 cut(s) 190
AcsI RAATTY 2 cut(s) 427, 576
AfaI GTAC 6 cut(s) 10, 24, 248, 695, 726, 731
AfiI CCNNNNNNNGG 2 cut(s) 334, 741
AflIII ACRYGT 1 cut(s) 411
AgsI TTSAA 3 cut(s) 527, 610, 782
AhlI ACTAGT 1 cut(s) 14
AjiI CACGTC 1 cut(s) 412
AjnI CCWGG 1 cut(s) 394
AluBI AGCT 5 cut(s) 173, 444, 557, 633, 704
AluI AGCT 5 cut(s) 173, 444, 557, 633, 704
AlwNI CAGNNNCTG 1 cut(s) 43
Ama87I CYCGRG 1 cut(s) 93
AoxI GGCC 1 cut(s) 190
ApeKI GCWGC 3 cut(s) 53, 170, 771
ApoI RAATTY 2 cut(s) 427, 576
AseI ATTAAT 1 cut(s) 186
AspS9I GGNCC 1 cut(s) 139
AvaI CYCGRG 1 cut(s) 93
AvaII GGWCC 1 cut(s) 139
BbvI GCAGC 3 cut(s) 40, 182, 758
BccI CCATC 1 cut(s) 374
BceAI ACGGC 1 cut(s) 364
BciT130I CCWGG 1 cut(s) 396
BciVI GTATCC 1 cut(s) 660
BcuI ACTAGT 1 cut(s) 14
BfaI CTAG 2 cut(s) 15, 814
BfmI CTRYAG 1 cut(s) 477
BfuI GTATCC 1 cut(s) 660
BisI GCNGC 3 cut(s) 54, 171, 772
BlpI GCTNAGC 1 cut(s) 634
BlsI GCNGC 3 cut(s) 55, 172, 773
BmcAI AGTACT 2 cut(s) 10, 24
Bme1390I CCNGG 1 cut(s) 396
Bme18I GGWCC 1 cut(s) 139
BmeT110I CYCGRG 1 cut(s) 93
BmgBI CACGTC 1 cut(s) 412
BmgT120I GGNCC 1 cut(s) 139
BmiI GGNNCC 2 cut(s) 141, 352
BmrFI CCNGG 1 cut(s) 396
BmrI ACTGGG 1 cut(s) 576
BmsI GCATC 1 cut(s) 499
BmuI ACTGGG 1 cut(s) 576
BoxI GACNNNNGTC 1 cut(s) 132
BpmI CTGGAG 1 cut(s) 718
Bpu1102I GCTNAGC 1 cut(s) 634
Bsa29I ATCGAT 1 cut(s) 291
BsaJI CCNNGG 1 cut(s) 394
Bsc4I CCNNNNNNNGG 2 cut(s) 334, 741
Bse118I RCCGGY 1 cut(s) 192
Bse1I ACTGG 2 cut(s) 20, 582
Bse3DI GCAATG 2 cut(s) 312, 781
BseBI CCWGG 1 cut(s) 396
BseCI ATCGAT 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 394
BseGI GGATG 1 cut(s) 66
BseLI CCNNNNNNNGG 2 cut(s) 334, 741
BseMI GCAATG 2 cut(s) 312, 781
BseNI ACTGG 2 cut(s) 20, 582
BseXI GCAGC 3 cut(s) 40, 182, 758
BshFI GGCC 1 cut(s) 192
BshVI ATCGAT 1 cut(s) 291
BsiHKCI CYCGRG 1 cut(s) 93
BsiSI CCGG 1 cut(s) 193
BslFI GGGAC 1 cut(s) 647
BslI CCNNNNNNNGG 2 cut(s) 334, 741
BsmFI GGGAC 1 cut(s) 647
BsmI GAATGC 1 cut(s) 605
BsnI GGCC 1 cut(s) 192
BsoBI CYCGRG 1 cut(s) 93
Bsp1407I TGTACA 1 cut(s) 693
Bsp1720I GCTNAGC 1 cut(s) 634
BspACI CCGC 2 cut(s) 74, 708
BspANI GGCC 1 cut(s) 192
BspDI ATCGAT 1 cut(s) 291
BspLI GGNNCC 2 cut(s) 141, 352
BspQI GCTCTTC 1 cut(s) 83
BsrBI CCGCTC 1 cut(s) 76
BsrDI GCAATG 2 cut(s) 312, 781
BsrFI RCCGGY 1 cut(s) 192
BsrGI TGTACA 1 cut(s) 693
BsrI ACTGG 2 cut(s) 20, 582
BssAI RCCGGY 1 cut(s) 192
BssECI CCNNGG 1 cut(s) 394
Bst2UI CCWGG 1 cut(s) 396
Bst4CI ACNGT 5 cut(s) 39, 334, 481, 490, 729
Bst6I CTCTTC 2 cut(s) 83, 454
BstAUI TGTACA 1 cut(s) 693
BstC8I GCNNGC 1 cut(s) 194
BstDEI CTNAG 1 cut(s) 634
BstF5I GGATG 1 cut(s) 66
BstMWI GCNNNNNNNGC 2 cut(s) 348, 509
BstNI CCWGG 1 cut(s) 396
BstPAI GACNNNNGTC 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 394
BstSFI CTRYAG 1 cut(s) 477
BstV1I GCAGC 3 cut(s) 40, 182, 758
Bsu15I ATCGAT 1 cut(s) 291
BsuI GTATCC 1 cut(s) 660
BsuRI GGCC 1 cut(s) 192
BsuTUI ATCGAT 1 cut(s) 291
BtrI CACGTC 1 cut(s) 412
BtsCI GGATG 1 cut(s) 66
BtsIMutI CAGTG 2 cut(s) 330, 486
Cac8I GCNNGC 1 cut(s) 194
CaiI CAGNNNCTG 1 cut(s) 43
Cfr10I RCCGGY 1 cut(s) 192
Cfr13I GGNCC 1 cut(s) 139
ClaI ATCGAT 1 cut(s) 291
CseI GACGC 1 cut(s) 611
Csp6I GTAC 6 cut(s) 9, 23, 247, 694, 725, 730
CviAII CATG 2 cut(s) 451, 751
CviQI GTAC 6 cut(s) 9, 23, 247, 694, 725, 730
DdeI CTNAG 1 cut(s) 634
EaeI YGGCCR 1 cut(s) 190
Eam1104I CTCTTC 2 cut(s) 83, 454
EarI CTCTTC 2 cut(s) 83, 454
EciI GGCGGA 1 cut(s) 697
Eco47I GGWCC 1 cut(s) 139
Eco88I CYCGRG 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 394
FaeI CATG 2 cut(s) 454, 754
FaqI GGGAC 1 cut(s) 647
FatI CATG 2 cut(s) 450, 750
FblI GTMKAC 1 cut(s) 32
Fnu4HI GCNGC 3 cut(s) 54, 171, 772
FokI GGATG 1 cut(s) 53
Fsp4HI GCNGC 3 cut(s) 54, 171, 772
FspBI CTAG 2 cut(s) 15, 814
GluI GCNGC 3 cut(s) 54, 171, 772
GsuI CTGGAG 1 cut(s) 718
HaeIII GGCC 1 cut(s) 192
HapII CCGG 1 cut(s) 193
HgaI GACGC 1 cut(s) 611
Hin1II CATG 2 cut(s) 454, 754
HincII GTYRAC 3 cut(s) 33, 127, 484
HindII GTYRAC 3 cut(s) 33, 127, 484
HindIII AAGCTT 1 cut(s) 631
HinfI GANTC 1 cut(s) 497
HpaII CCGG 1 cut(s) 193
Hpy166II GTNNAC 6 cut(s) 33, 127, 247, 280, 484, 758
Hpy188I TCNGA 5 cut(s) 273, 458, 496, 553, 808
Hpy188III TCNNGA 3 cut(s) 137, 719, 735
Hpy8I GTNNAC 6 cut(s) 33, 127, 247, 280, 484, 758
Hpy99I CGWCG 1 cut(s) 240
HpyCH4III ACNGT 5 cut(s) 39, 334, 481, 490, 729
HpyCH4IV ACGT 3 cut(s) 230, 411, 723
HpyCH4V TGCA 3 cut(s) 146, 518, 774
HpyF10VI GCNNNNNNNGC 2 cut(s) 348, 509
HpyF3I CTNAG 1 cut(s) 634
HpySE526I ACGT 3 cut(s) 230, 411, 723
Hsp92II CATG 2 cut(s) 454, 754
KroI GCCGGC 1 cut(s) 192
KroNI GCCGGC 1 cut(s) 194
LguI GCTCTTC 1 cut(s) 83
LmnI GCTCC 3 cut(s) 356, 441, 562
Lsp1109I GCAGC 3 cut(s) 40, 182, 758
LweI GCATC 1 cut(s) 499
MaeI CTAG 2 cut(s) 15, 814
MaeII ACGT 3 cut(s) 230, 411, 723
MaeIII GTNAC 1 cut(s) 176
MbiI CCGCTC 1 cut(s) 76
MboII GAAGA 5 cut(s) 16, 70, 257, 260, 471
MluCI AATT 3 cut(s) 183, 427, 576
MlyI GAGTC 1 cut(s) 491
MmeI TCCRAC 1 cut(s) 436
MnlI CCTC 1 cut(s) 338
MroNI GCCGGC 1 cut(s) 192
MseI TTAA 2 cut(s) 156, 186
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 1 cut(s) 193
MspR9I CCNGG 1 cut(s) 396
Mva1269I GAATGC 1 cut(s) 605
MvaI CCWGG 1 cut(s) 396
MwoI GCNNNNNNNGC 2 cut(s) 348, 509
NaeI GCCGGC 1 cut(s) 194
NgoMIV GCCGGC 1 cut(s) 192
NlaIII CATG 2 cut(s) 454, 754
NlaIV GGNNCC 2 cut(s) 141, 352
PaeR7I CTCGAG 1 cut(s) 93
PciSI GCTCTTC 1 cut(s) 83
PcsI WCGNNNNNNNCGW 2 cut(s) 288, 720
PctI GAATGC 1 cut(s) 605
PdiI GCCGGC 1 cut(s) 194
PkrI GCNGC 3 cut(s) 55, 172, 773
PleI GAGTC 1 cut(s) 491
PpsI GAGTC 1 cut(s) 491
PshAI GACNNNNGTC 1 cut(s) 132
PshBI ATTAAT 1 cut(s) 186
Psp6I CCWGG 1 cut(s) 394
PspGI CCWGG 1 cut(s) 394
PspN4I GGNNCC 2 cut(s) 141, 352
PspPI GGNCC 1 cut(s) 139
PspXI VCTCGAGB 1 cut(s) 93
PstNI CAGNNNCTG 1 cut(s) 43
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 6 cut(s) 10, 24, 248, 695, 726, 731
RsaNI GTAC 6 cut(s) 9, 23, 247, 694, 725, 730
SalI GTCGAC 1 cut(s) 31
SapI GCTCTTC 1 cut(s) 83
SaqAI TTAA 2 cut(s) 156, 186
SatI GCNGC 3 cut(s) 54, 171, 772
Sau96I GGNCC 1 cut(s) 139
ScaI AGTACT 2 cut(s) 10, 24
SchI GAGTC 1 cut(s) 491
ScrFI CCNGG 1 cut(s) 396
SfaNI GCATC 1 cut(s) 499
SfcI CTRYAG 1 cut(s) 477
Sfr274I CTCGAG 1 cut(s) 93
SinI GGWCC 1 cut(s) 139
SlaI CTCGAG 1 cut(s) 93
SmlI CTYRAG 1 cut(s) 93
SmoI CTYRAG 1 cut(s) 93
SpeI ACTAGT 1 cut(s) 14
Sse9I AATT 3 cut(s) 183, 427, 576
SsiI CCGC 2 cut(s) 74, 708
SspI AATATT 1 cut(s) 625
SspMI CTAG 2 cut(s) 15, 814
StyD4I CCNGG 1 cut(s) 394
TaaI ACNGT 5 cut(s) 39, 334, 481, 490, 729
TaiI ACGT 3 cut(s) 233, 414, 726
TaqI TCGA 3 cut(s) 32, 94, 291
TasI AATT 3 cut(s) 183, 427, 576
TatI WGTACW 5 cut(s) 8, 22, 246, 693, 729
Tru1I TTAA 2 cut(s) 156, 186
Tru9I TTAA 2 cut(s) 156, 186
TscAI CASTG 2 cut(s) 337, 493
TseI GCWGC 3 cut(s) 53, 170, 771
TspDTI ATGAA 4 cut(s) 17, 70, 95, 784
TspGWI ACGGA 2 cut(s) 549, 633
TspRI CASTG 2 cut(s) 337, 493
VpaK11BI GGWCC 1 cut(s) 139
VspI ATTAAT 1 cut(s) 186
XapI RAATTY 2 cut(s) 427, 576
XhoI CTCGAG 1 cut(s) 93
XmiI GTMKAC 1 cut(s) 32
XspI CTAG 2 cut(s) 15, 814
ZrmI AGTACT 2 cut(s) 10, 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.