Rh6AG191000

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000320
Physical Location & Seq
Reverse (-)
34141353 .. 34141967
615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG191000.1

Sequence Viewer

Length: 615 bp
ATGAATGCAGAACACTTCTTTGCCGTTGCAGAGCATAGTCTCACTGTGGTTGGACTAGATGGAGCCTACATAAAACCCATAAACACTGCCTACATAGTCATAAGTCCTGGACAAACGATGGATGTCTTGCTAGTAGCAAACCAGTCTCTTGGCCAATATTATATGGCTATTAGACAATACTCAAGTGAGAACATTGCAGTCACTAGATTTGACCATGCAAATGTTACTGCAATCCTTGAATACAGAGGCGACTATACATATGAGACATCTCCTGTATTTCCATCTACTCTTCCTATGTACTTGGACAAAGCAGCAGCACTCAAATTCACATACCAACTTAGAAGCTTGGCTACTCCAGAGTACCCTGTAAATGTTCCACTCGACATCACTACTAGAATGTATATTACGGTGTCGATGAATGTACTTCCTTGTGACCATGCAGGCTGTGAAATAACTGAGAATATCGCTTCAAGCCTAAATAATGTTAGTTGGGTCGACACAAAACCAACTACAAATGTCTTGGAAGCCTACTACAGGTTCTTCCTCTTCTCTCTACATTTCATGCATCTTATTTGTGAGAGAAAAGTGAGATTTAATTACTACATCCTTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

204

Amino Acids

23.26

Weight (kDa)

5.62

Isoelectric Point (pI)

38.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase PF00394 2 - 83 1.6e-18 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000320)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g12640 FvH4_2g18980 FvH4_2g18990 FvH4_2g40270 FvH4_2g40270 FvH4_4g22740 FvH4_4g22740 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g36460 FvH4_5g36460 FvH4_6g39950 FvH4_6g39970 FvH4_6g39983 FvH4_6g39990
rosa_chinensis RchiOBHm_Chr2g0154481 RchiOBHm_Chr2g0154511 RchiOBHm_Chr4g0428961 RchiOBHm_Chr6g0252431 RchiOBHm_Chr6g0273301 RchiOBHm_Chr6g0273631 RchiOBHm_Chr6g0273651 RchiOBHm_Chr6g0284751 RchiOBHm_Chr6g0284761 RchiOBHm_Chr6g0300491 RchiOBHm_Chr7g0237421 RchiOBHm_Chr7g0238581
rosa_laevigata RLG00000000906 RLG00000001006 RLG00000007110 RLG00000011333 RLG00000012721 RLG00000013605 RLG00000013626 RLG00000020780 RLG00000020782 RLG00000020783 RLG00000020786
rosa_multiflora Rmu_co8321753.1_g000001 Rmu_sc0000239.1_g000020 Rmu_sc0000686.1_g000001 Rmu_sc0000686.1_g000003 Rmu_sc0000686.1_g000005 Rmu_sc0001476.1_g000011 Rmu_sc0002231.1_g000002 Rmu_sc0002231.1_g000016 Rmu_sc0002690.1_g000003 Rmu_sc0002717.1_g000015 Rmu_sc0002923.1_g000026 Rmu_sc0003808.1_g000016 Rmu_sc0006475.1_g000008 Rmu_sc0006475.1_g000012 Rmu_sc0006475.1_g000018 Rmu_sc0014815.1_g000004 Rmu_sc0015313.1_g000012
rosa_roxburghii Rroxscaffold_2G00094270 Rroxscaffold_2G00094290 Rroxscaffold_3G00222950 Rroxscaffold_3G00224250 Rroxscaffold_5G00370630 Rroxscaffold_7G00167740 Rroxscaffold_7G00184410 Rroxscaffold_7G00195190 Rroxscaffold_7G00195460
rosa_rugosa Rorug02G0444600 Rorug04G0231100 Rorug04G0231200 Rorug06G0074000 Rorug06G0076800 Rorug06G0166400 Rorug06G0166500 Rorug06G0166600 Rorug06G0296400 Rorug07G0303000
rosa_samantha Rh2CG494600 Rh2CG494700 Rh2DG530800 Rh2DG530900 Rh2DG531000 Rh4AG287500 Rh4AG403800 Rh4BG293400 Rh4BG415100 Rh4DG290500 Rh6AG191000 Rh6AG191300 Rh6BG192500 Rh6BG194800 Rh6BG195200 Rh6BG279500 Rh6BG279600 Rh6DG183900 Rh6DG186600 Rh6DG274300 Rh6DG274500 Rh6DG409500 Rh7AG460600 Rh7AG468200 Rh7BG430200
rosa_wichuraiana Rw2G041820 Rw2G041830 Rw2G041840 Rw4G024930 Rw6G016470 Rw6G016720 Rw6G016730 Rw6G024020 Rw6G024030 Rw6G035790 Rw7G038130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 495
AcoI YGGCCR 1 cut(s) 151
AcsI RAATTY 1 cut(s) 323
AfaI GTAC 3 cut(s) 299, 362, 423
AfiI CCNNNNNNNGG 1 cut(s) 534
AgsI TTSAA 3 cut(s) 239, 471, 611
AjnI CCWGG 1 cut(s) 106
AluBI AGCT 1 cut(s) 345
AluI AGCT 1 cut(s) 345
Alw26I GTCTC 3 cut(s) 44, 150, 257
AoxI GGCC 1 cut(s) 151
ApeKI GCWGC 2 cut(s) 311, 314
ApoI RAATTY 1 cut(s) 323
BalI TGGCCA 1 cut(s) 153
BarI GAAGNNNNNNTAC 2 cut(s) 334, 366
BbvI GCAGC 2 cut(s) 323, 326
BccI CCATC 3 cut(s) 53, 112, 289
BceAI ACGGC 1 cut(s) 8
BciT130I CCWGG 1 cut(s) 108
BcoDI GTCTC 3 cut(s) 44, 150, 257
BfaI CTAG 4 cut(s) 56, 131, 204, 393
BfmI CTRYAG 1 cut(s) 532
BisI GCNGC 2 cut(s) 312, 315
BlsI GCNGC 2 cut(s) 313, 316
Bme1390I CCNGG 1 cut(s) 108
BmiI GGNNCC 1 cut(s) 64
BmrFI CCNGG 1 cut(s) 108
BmsI GCATC 1 cut(s) 574
BpmI CTGGAG 1 cut(s) 339
BpuEI CTTGAG 1 cut(s) 166
Bsc4I CCNNNNNNNGG 1 cut(s) 534
Bse1I ACTGG 1 cut(s) 142
Bse3DI GCAATG 1 cut(s) 192
BseBI CCWGG 1 cut(s) 108
BseGI GGATG 2 cut(s) 127, 603
BseLI CCNNNNNNNGG 1 cut(s) 534
BseMI GCAATG 1 cut(s) 192
BseMII CTCAG 1 cut(s) 447
BseNI ACTGG 1 cut(s) 142
BseXI GCAGC 2 cut(s) 323, 326
BshFI GGCC 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 534
BsmAI GTCTC 3 cut(s) 44, 150, 257
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 1 cut(s) 153
BspANI GGCC 1 cut(s) 153
BspCNI CTCAG 1 cut(s) 448
BspLI GGNNCC 1 cut(s) 64
BsrDI GCAATG 1 cut(s) 192
BsrI ACTGG 1 cut(s) 142
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 2 cut(s) 46, 409
Bst6I CTCTTC 2 cut(s) 294, 551
BstC8I GCNNGC 1 cut(s) 442
BstDEI CTNAG 2 cut(s) 338, 456
BstENI CCTNNNNNAGG 1 cut(s) 532
BstF5I GGATG 2 cut(s) 127, 603
BstMAI GTCTC 3 cut(s) 44, 150, 257
BstNI CCWGG 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 106
BstSFI CTRYAG 1 cut(s) 532
BstV1I GCAGC 2 cut(s) 323, 326
BstXI CCANNNNNNTGG 1 cut(s) 149
BsuRI GGCC 1 cut(s) 153
BtsCI GGATG 2 cut(s) 127, 603
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 2 cut(s) 42, 84
Cac8I GCNNGC 1 cut(s) 442
Csp6I GTAC 3 cut(s) 298, 361, 422
CviAII CATG 3 cut(s) 215, 437, 562
CviJI RGCY 8 cut(s) 65, 153, 167, 345, 350, 444, 474, 527
CviKI_1 RGCY 8 cut(s) 65, 153, 167, 345, 350, 444, 474, 527
CviQI GTAC 3 cut(s) 298, 361, 422
DdeI CTNAG 2 cut(s) 338, 456
EaeI YGGCCR 1 cut(s) 151
Eam1104I CTCTTC 2 cut(s) 294, 551
EarI CTCTTC 2 cut(s) 294, 551
EcoNI CCTNNNNNAGG 1 cut(s) 532
EcoRII CCWGG 1 cut(s) 106
EcoT22I ATGCAT 1 cut(s) 567
FaeI CATG 3 cut(s) 218, 440, 565
FatI CATG 3 cut(s) 214, 436, 561
FauNDI CATATG 1 cut(s) 259
FblI GTMKAC 1 cut(s) 495
Fnu4HI GCNGC 2 cut(s) 312, 315
FokI GGATG 2 cut(s) 134, 590
Fsp4HI GCNGC 2 cut(s) 312, 315
FspBI CTAG 4 cut(s) 56, 131, 204, 393
GluI GCNGC 2 cut(s) 312, 315
GsuI CTGGAG 1 cut(s) 339
HaeIII GGCC 1 cut(s) 153
Hin1II CATG 3 cut(s) 218, 440, 565
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HindIII AAGCTT 1 cut(s) 343
Hpy166II GTNNAC 1 cut(s) 496
Hpy188III TCNNGA 1 cut(s) 356
Hpy8I GTNNAC 1 cut(s) 496
HpyCH4III ACNGT 2 cut(s) 46, 409
HpyCH4V TGCA 7 cut(s) 8, 29, 197, 218, 230, 440, 565
HpyF3I CTNAG 2 cut(s) 338, 456
Hsp92II CATG 3 cut(s) 218, 440, 565
LmnI GCTCC 1 cut(s) 62
LpnPI CCDG 8 cut(s) 93, 120, 155, 285, 369, 378, 426, 520
Lsp1109I GCAGC 2 cut(s) 323, 326
LweI GCATC 1 cut(s) 574
MaeI CTAG 4 cut(s) 56, 131, 204, 393
MaeIII GTNAC 3 cut(s) 199, 223, 431
MboII GAAGA 3 cut(s) 281, 532, 538
MlsI TGGCCA 1 cut(s) 153
MluCI AATT 2 cut(s) 323, 595
MluNI TGGCCA 1 cut(s) 153
MmeI TCCRAC 1 cut(s) 31
MnlI CCTC 2 cut(s) 239, 554
Mox20I TGGCCA 1 cut(s) 153
Mph1103I ATGCAT 1 cut(s) 567
MscI TGGCCA 1 cut(s) 153
MseI TTAA 1 cut(s) 594
MslI CAYNNNNRTG 1 cut(s) 219
Msp20I TGGCCA 1 cut(s) 153
MspR9I CCNGG 1 cut(s) 108
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 1 cut(s) 108
NdeI CATATG 1 cut(s) 259
NlaIII CATG 3 cut(s) 218, 440, 565
NlaIV GGNNCC 1 cut(s) 64
NmuCI GTSAC 2 cut(s) 199, 431
NsiI ATGCAT 1 cut(s) 567
PctI GAATGC 1 cut(s) 10
PfoI TCCNGGA 1 cut(s) 106
PkrI GCNGC 2 cut(s) 313, 316
Psp6I CCWGG 1 cut(s) 106
PspGI CCWGG 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 64
RsaI GTAC 3 cut(s) 299, 362, 423
RsaNI GTAC 3 cut(s) 298, 361, 422
RseI CAYNNNNRTG 1 cut(s) 219
SalI GTCGAC 1 cut(s) 494
SaqAI TTAA 1 cut(s) 594
SatI GCNGC 2 cut(s) 312, 315
ScrFI CCNGG 1 cut(s) 108
SetI ASST 2 cut(s) 347, 539
SfaNI GCATC 1 cut(s) 574
SfcI CTRYAG 1 cut(s) 532
SmiMI CAYNNNNRTG 1 cut(s) 219
SmlI CTYRAG 1 cut(s) 181
SmoI CTYRAG 1 cut(s) 181
Sse9I AATT 2 cut(s) 323, 595
SspI AATATT 1 cut(s) 158
SspMI CTAG 4 cut(s) 56, 131, 204, 393
StyD4I CCNGG 1 cut(s) 106
TaaI ACNGT 2 cut(s) 46, 409
TaqI TCGA 3 cut(s) 381, 413, 495
TasI AATT 2 cut(s) 323, 595
TatI WGTACW 2 cut(s) 297, 421
Tru1I TTAA 1 cut(s) 594
Tru9I TTAA 1 cut(s) 594
TscAI CASTG 2 cut(s) 49, 91
TseFI GTSAC 2 cut(s) 199, 431
TseI GCWGC 2 cut(s) 311, 314
Tsp45I GTSAC 2 cut(s) 199, 431
TspDTI ATGAA 3 cut(s) 17, 431, 550
TspRI CASTG 2 cut(s) 49, 91
XagI CCTNNNNNAGG 1 cut(s) 532
XapI RAATTY 1 cut(s) 323
XmiI GTMKAC 1 cut(s) 495
XspI CTAG 4 cut(s) 56, 131, 204, 393
Zsp2I ATGCAT 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.