Rroxscaffold_7G00195460

Belongs to the multicopper oxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000320
Physical Location & Seq
Reverse (-)
37778123 .. 37782875
4753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00195460.1

Sequence Viewer

Length: 1227 bp
ATGAACTGTCGATTATTGATGACAGAAGTTCTGGGGTTTCTCTTTGTTTTTGTGCAGTTTTACTCTCTGGTTCAAGGCGAAGTGCATATCTATGATTTTCTTGTAAGGGAGAGAAACTTCACCAAACTCTGTGTAACCAAGAGCATTTTAGTAGTAAATGACAGTTTTCCAGGTCCGGAGATACGAGTTCACAAAGGAGATACAGTTTTCGTTAATGTTCATAACCAAGGATATTATGGTTTCACTATTCACTGGCATGGAATAAAGCAACCAAGAAATCCTTGGTCAGATGGTCCAGAGTACATTACGCAGTGTCCAATCCCTCCTGGAACAAATTTCACATACGAAATCCACTTATCCGATGAGGAAGGAACTTTATGGTGGCATGCTCATAGTGACTGGACAAGAGCCACAGTTCATGGTGCCATTGTCATCTTGCCCGCTGTTGGAACAACATTTCCATTCCCTCAACCGGATGATGATGAGACCATTATAATTGCATCCTGGTACTATGGAGATGTGAAAGAACTTGTGGATGTGGCCATGGAAGAAGGTAGCGACTTGCCCCATTCAGATGCTTATACTATAAATGGTGAACCAGGAGATCTGTGTAACTGCTCTAAAGAAACAACCTACCGTCGAATGGTGGACTACGGAAAGACCTATCTGCTCCGTATAATCAATGCAAATATTAATGCAGAACACTTCTTTGCGGTTGGTGACCATAACCTCACTGTGGTTGGACTAGATGGAGCCTATATAAAACCCATAAACACAGGTTACCTAGTTATAAGCCCTGGACAAGCGATGGATGTCCTCCTCGAAGCAAATCAATCTCCTGGTCAATACTATATGGCTGCTAGGCAATACTCGAGTGAGGATGAAGCAGTCGTGGACTTCGACCACGTCAATGTTACTGCAATCCTAGAATATAGAGGCAACTATACATATCAACCTCCTTCCTTTCCAACCACTCTTCCAATGTACTTGGACTATCCAGCAGCAGTAAAATTCACTTTACGAATTAAGAGCTTAGCGACTCCAGAATACCCTATTAGTGTCCCACTAAACGTTACTACTTCAATGTTCATAACCGTTTCCATGAATGAACTTCCTTGTACTCATTCAGGCTGTAAAACGGATCAGAAAATGACTTCAAGCCTGAATAATGTTAGCTGGGCGTTCCCACTCAATACCACAGATGTTCTTCAAGCCTACTACAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

408

Amino Acids

46.11

Weight (kDa)

4.98

Isoelectric Point (pI)

33.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 36 - 147 1e-40 Multicopper oxidase
Cu-oxidase PF00394 162 - 314 1.2e-38 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000320)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g12640 FvH4_2g18980 FvH4_2g18990 FvH4_2g40270 FvH4_2g40270 FvH4_4g22740 FvH4_4g22740 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g36460 FvH4_5g36460 FvH4_6g39950 FvH4_6g39970 FvH4_6g39983 FvH4_6g39990
rosa_chinensis RchiOBHm_Chr2g0154481 RchiOBHm_Chr2g0154511 RchiOBHm_Chr4g0428961 RchiOBHm_Chr6g0252431 RchiOBHm_Chr6g0273301 RchiOBHm_Chr6g0273631 RchiOBHm_Chr6g0273651 RchiOBHm_Chr6g0284751 RchiOBHm_Chr6g0284761 RchiOBHm_Chr6g0300491 RchiOBHm_Chr7g0237421 RchiOBHm_Chr7g0238581
rosa_laevigata RLG00000000906 RLG00000001006 RLG00000007110 RLG00000011333 RLG00000012721 RLG00000013605 RLG00000013626 RLG00000020780 RLG00000020782 RLG00000020783 RLG00000020786
rosa_multiflora Rmu_co8321753.1_g000001 Rmu_sc0000239.1_g000020 Rmu_sc0000686.1_g000001 Rmu_sc0000686.1_g000003 Rmu_sc0000686.1_g000005 Rmu_sc0001476.1_g000011 Rmu_sc0002231.1_g000002 Rmu_sc0002231.1_g000016 Rmu_sc0002690.1_g000003 Rmu_sc0002717.1_g000015 Rmu_sc0002923.1_g000026 Rmu_sc0003808.1_g000016 Rmu_sc0006475.1_g000008 Rmu_sc0006475.1_g000012 Rmu_sc0006475.1_g000018 Rmu_sc0014815.1_g000004 Rmu_sc0015313.1_g000012
rosa_roxburghii Rroxscaffold_2G00094270 Rroxscaffold_2G00094290 Rroxscaffold_3G00222950 Rroxscaffold_3G00224250 Rroxscaffold_5G00370630 Rroxscaffold_7G00167740 Rroxscaffold_7G00184410 Rroxscaffold_7G00195190 Rroxscaffold_7G00195460
rosa_rugosa Rorug02G0444600 Rorug04G0231100 Rorug04G0231200 Rorug06G0074000 Rorug06G0076800 Rorug06G0166400 Rorug06G0166500 Rorug06G0166600 Rorug06G0296400 Rorug07G0303000
rosa_samantha Rh2CG494600 Rh2CG494700 Rh2DG530800 Rh2DG530900 Rh2DG531000 Rh4AG287500 Rh4AG403800 Rh4BG293400 Rh4BG415100 Rh4DG290500 Rh6AG191000 Rh6AG191300 Rh6BG192500 Rh6BG194800 Rh6BG195200 Rh6BG279500 Rh6BG279600 Rh6DG183900 Rh6DG186600 Rh6DG274300 Rh6DG274500 Rh6DG409500 Rh7AG460600 Rh7AG468200 Rh7BG430200
rosa_wichuraiana Rw2G041820 Rw2G041830 Rw2G041840 Rw4G024930 Rw6G016470 Rw6G016720 Rw6G016730 Rw6G024020 Rw6G024030 Rw6G035790 Rw7G038130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 494, 791
AccB1I GGYRCC 1 cut(s) 422
AccIII TCCGGA 1 cut(s) 175
AciI CCGC 2 cut(s) 441, 713
AclI AACGTT 1 cut(s) 1071
AclWI GGATC 1 cut(s) 1149
AcoI YGGCCR 1 cut(s) 540
AcsI RAATTY 2 cut(s) 334, 1010
AfaI GTAC 4 cut(s) 302, 509, 986, 1120
AfiI CCNNNNNNNGG 5 cut(s) 446, 472, 643, 736, 1221
AgsI TTSAA 4 cut(s) 74, 1083, 1158, 1211
AjiI CACGTC 1 cut(s) 907
AjnI CCWGG 6 cut(s) 169, 325, 503, 598, 796, 838
AloI GAACNNNNNNTCC 2 cut(s) 442, 474
AluBI AGCT 2 cut(s) 1032, 1176
AluI AGCT 2 cut(s) 1032, 1176
Alw26I GTCTC 1 cut(s) 479
AlwI GGATC 1 cut(s) 1149
Ama87I CYCGRG 1 cut(s) 871
Aor13HI TCCGGA 1 cut(s) 175
AoxI GGCC 1 cut(s) 540
ApeKI GCWGC 2 cut(s) 857, 1001
ApoI RAATTY 2 cut(s) 334, 1010
AseI ATTAAT 1 cut(s) 693
AspS9I GGNCC 2 cut(s) 173, 293
AsuHPI GGTGA 3 cut(s) 112, 605, 731
AvaI CYCGRG 1 cut(s) 871
AvaII GGWCC 2 cut(s) 173, 293
BalI TGGCCA 1 cut(s) 542
BanI GGYRCC 1 cut(s) 422
BbvI GCAGC 2 cut(s) 844, 1013
BccI CCATC 3 cut(s) 284, 743, 802
BciT130I CCWGG 6 cut(s) 171, 327, 505, 600, 798, 840
BcoDI GTCTC 1 cut(s) 479
BfaI CTAG 4 cut(s) 746, 785, 861, 926
BfmI CTRYAG 1 cut(s) 1219
BglII AGATCT 1 cut(s) 604
BisI GCNGC 2 cut(s) 858, 1002
BlpI GCTNAGC 1 cut(s) 1033
BlsI GCNGC 2 cut(s) 859, 1003
Bme1390I CCNGG 6 cut(s) 171, 327, 505, 600, 798, 840
Bme18I GGWCC 2 cut(s) 173, 293
BmeT110I CYCGRG 1 cut(s) 871
BmgBI CACGTC 1 cut(s) 907
BmgT120I GGNCC 2 cut(s) 173, 293
BmiI GGNNCC 2 cut(s) 424, 754
BmrFI CCNGG 6 cut(s) 171, 327, 505, 600, 798, 840
BmsI GCATC 2 cut(s) 509, 565
BpmI CTGGAG 1 cut(s) 1026
Bpu1102I GCTNAGC 1 cut(s) 1033
BsaI GGTCTC 1 cut(s) 479
BsaJI CCNNGG 4 cut(s) 226, 281, 543, 796
BsaWI WCCGGW 2 cut(s) 175, 472
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
Bsc4I CCNNNNNNNGG 5 cut(s) 446, 472, 643, 736, 1221
Bse1I ACTGG 2 cut(s) 257, 404
BseAI TCCGGA 1 cut(s) 175
BseBI CCWGG 6 cut(s) 171, 327, 505, 600, 798, 840
BseDI CCNNGG 4 cut(s) 226, 281, 543, 796
BseGI GGATG 5 cut(s) 481, 500, 541, 817, 886
BseLI CCNNNNNNNGG 5 cut(s) 446, 472, 643, 736, 1221
BseNI ACTGG 2 cut(s) 257, 404
BseRI GAGGAG 1 cut(s) 809
BseXI GCAGC 2 cut(s) 844, 1013
BseYI CCCAGC 1 cut(s) 1176
BsgI GTGCAG 1 cut(s) 74
BshFI GGCC 1 cut(s) 542
BshNI GGYRCC 1 cut(s) 422
BsiHKCI CYCGRG 1 cut(s) 871
BsiSI CCGG 2 cut(s) 176, 473
BslFI GGGAC 1 cut(s) 1046
BslI CCNNNNNNNGG 5 cut(s) 446, 472, 643, 736, 1221
BsmAI GTCTC 1 cut(s) 479
BsmFI GGGAC 1 cut(s) 1046
BsnI GGCC 1 cut(s) 542
Bso31I GGTCTC 1 cut(s) 479
BsoBI CYCGRG 1 cut(s) 871
Bsp13I TCCGGA 1 cut(s) 175
Bsp143I GATC 2 cut(s) 604, 1141
Bsp1720I GCTNAGC 1 cut(s) 1033
Bsp19I CCATGG 1 cut(s) 543
BspACI CCGC 2 cut(s) 441, 713
BspANI GGCC 1 cut(s) 542
BspEI TCCGGA 1 cut(s) 175
BspLI GGNNCC 2 cut(s) 424, 754
BspPI GGATC 1 cut(s) 1149
BspT107I GGYRCC 1 cut(s) 422
BspTNI GGTCTC 1 cut(s) 479
BsrI ACTGG 2 cut(s) 257, 404
BssECI CCNNGG 4 cut(s) 226, 281, 543, 796
BssMI GATC 2 cut(s) 604, 1141
BssT1I CCWWGG 3 cut(s) 226, 281, 543
Bst2UI CCWGG 6 cut(s) 171, 327, 505, 600, 798, 840
Bst4CI ACNGT 7 cut(s) 8, 164, 205, 415, 638, 736, 1096
Bst6I CTCTTC 1 cut(s) 981
BstC8I GCNNGC 2 cut(s) 387, 441
BstDEI CTNAG 1 cut(s) 1033
BstDSI CCRYGG 1 cut(s) 543
BstEII GGTNACC 2 cut(s) 719, 779
BstENI CCTNNNNNAGG 1 cut(s) 1219
BstF5I GGATG 5 cut(s) 481, 500, 541, 817, 886
BstKTI GATC 2 cut(s) 607, 1144
BstMAI GTCTC 1 cut(s) 479
BstMBI GATC 2 cut(s) 604, 1141
BstNI CCWGG 6 cut(s) 171, 327, 505, 600, 798, 840
BstNSI RCATGY 1 cut(s) 389
BstPI GGTNACC 2 cut(s) 719, 779
BstSCI CCNGG 6 cut(s) 169, 325, 503, 598, 796, 838
BstSFI CTRYAG 1 cut(s) 1219
BstV1I GCAGC 2 cut(s) 844, 1013
BstX2I RGATCY 1 cut(s) 604
BstYI RGATCY 1 cut(s) 604
BsuRI GGCC 1 cut(s) 542
BtgI CCRYGG 1 cut(s) 543
BtgZI GCGATG 1 cut(s) 821
BtrI CACGTC 1 cut(s) 907
BtsCI GGATG 5 cut(s) 481, 500, 541, 817, 886
BtsI GCAGTG 1 cut(s) 317
BtsIMutI CAGTG 3 cut(s) 250, 317, 732
Cac8I GCNNGC 2 cut(s) 387, 441
Cfr13I GGNCC 2 cut(s) 173, 293
Csp6I GTAC 4 cut(s) 301, 508, 985, 1119
CviAII CATG 5 cut(s) 257, 386, 419, 544, 1102
CviQI GTAC 4 cut(s) 301, 508, 985, 1119
DdeI CTNAG 1 cut(s) 1033
DpnI GATC 2 cut(s) 606, 1143
DpnII GATC 2 cut(s) 604, 1141
EaeI YGGCCR 1 cut(s) 540
Eam1104I CTCTTC 1 cut(s) 981
EarI CTCTTC 1 cut(s) 981
Eco130I CCWWGG 3 cut(s) 226, 281, 543
Eco31I GGTCTC 1 cut(s) 479
Eco47I GGWCC 2 cut(s) 173, 293
Eco88I CYCGRG 1 cut(s) 871
Eco91I GGTNACC 2 cut(s) 719, 779
EcoNI CCTNNNNNAGG 1 cut(s) 1219
EcoO65I GGTNACC 2 cut(s) 719, 779
EcoRII CCWGG 6 cut(s) 169, 325, 503, 598, 796, 838
EcoT14I CCWWGG 3 cut(s) 226, 281, 543
ErhI CCWWGG 3 cut(s) 226, 281, 543
FaeI CATG 5 cut(s) 260, 389, 422, 547, 1105
FalI AAGNNNNNCTT 2 cut(s) 265, 297
FaqI GGGAC 1 cut(s) 1046
FatI CATG 5 cut(s) 256, 385, 418, 543, 1101
FauI CCCGC 1 cut(s) 448
Fnu4HI GCNGC 2 cut(s) 858, 1002
FokI GGATG 5 cut(s) 487, 488, 548, 824, 893
Fsp4HI GCNGC 2 cut(s) 858, 1002
FspBI CTAG 4 cut(s) 746, 785, 861, 926
GluI GCNGC 2 cut(s) 858, 1002
GsaI CCCAGC 1 cut(s) 1180
GsuI CTGGAG 1 cut(s) 1026
HaeIII GGCC 1 cut(s) 542
HapII CCGG 2 cut(s) 176, 473
Hin1II CATG 5 cut(s) 260, 389, 422, 547, 1105
HinfI GANTC 1 cut(s) 1039
HpaII CCGG 2 cut(s) 176, 473
HphI GGTGA 3 cut(s) 112, 605, 731
Hpy166II GTNNAC 4 cut(s) 190, 596, 649, 895
Hpy188I TCNGA 4 cut(s) 289, 361, 574, 1146
Hpy188III TCNNGA 3 cut(s) 176, 296, 1043
Hpy8I GTNNAC 4 cut(s) 190, 596, 649, 895
Hpy99I CGWCG 1 cut(s) 642
HpyAV CCTTC 3 cut(s) 362, 545, 969
HpyCH4III ACNGT 7 cut(s) 8, 164, 205, 415, 638, 736, 1096
HpyCH4IV ACGT 2 cut(s) 906, 1071
HpyCH4V TGCA 6 cut(s) 55, 85, 500, 686, 698, 920
HpyF3I CTNAG 1 cut(s) 1033
HpySE526I ACGT 2 cut(s) 906, 1071
Hsp92II CATG 5 cut(s) 260, 389, 422, 547, 1105
Kpn2I TCCGGA 1 cut(s) 175
Kzo9I GATC 2 cut(s) 604, 1141
LmnI GCTCC 2 cut(s) 675, 752
Lsp1109I GCAGC 2 cut(s) 844, 1013
LweI GCATC 2 cut(s) 509, 565
MaeI CTAG 4 cut(s) 746, 785, 861, 926
MaeII ACGT 2 cut(s) 906, 1071
MaeIII GTNAC 7 cut(s) 133, 395, 611, 719, 779, 913, 1072
MalI GATC 2 cut(s) 606, 1143
MboI GATC 2 cut(s) 604, 1141
MboII GAAGA 3 cut(s) 560, 968, 1199
MflI RGATCY 1 cut(s) 604
MlsI TGGCCA 1 cut(s) 542
MluCI AATT 4 cut(s) 334, 495, 1010, 1023
MluNI TGGCCA 1 cut(s) 542
MlyI GAGTC 1 cut(s) 1033
MmeI TCCRAC 3 cut(s) 427, 721, 992
MnlI CCTC 9 cut(s) 333, 358, 477, 740, 827, 830, 871, 929, 966
Mox20I TGGCCA 1 cut(s) 542
MroI TCCGGA 1 cut(s) 175
MscI TGGCCA 1 cut(s) 542
MseI TTAA 3 cut(s) 213, 693, 1026
MslI CAYNNNNRTG 4 cut(s) 90, 255, 573, 909
Msp20I TGGCCA 1 cut(s) 542
MspA1I CMGCKG 1 cut(s) 443
MspI CCGG 2 cut(s) 176, 473
MspR9I CCNGG 6 cut(s) 171, 327, 505, 600, 798, 840
MvaI CCWGG 6 cut(s) 171, 327, 505, 600, 798, 840
NcoI CCATGG 1 cut(s) 543
NdeII GATC 2 cut(s) 604, 1141
NlaIII CATG 5 cut(s) 260, 389, 422, 547, 1105
NlaIV GGNNCC 2 cut(s) 424, 754
NmuCI GTSAC 2 cut(s) 395, 719
NspI RCATGY 1 cut(s) 389
PaeI GCATGC 1 cut(s) 389
PaeR7I CTCGAG 1 cut(s) 871
PcsI WCGNNNNNNNCGW 1 cut(s) 897
PflFI GACNNNGTC 1 cut(s) 905
PfoI TCCNGGA 1 cut(s) 325
PkrI GCNGC 2 cut(s) 859, 1003
PleI GAGTC 1 cut(s) 1033
PpsI GAGTC 1 cut(s) 1033
PshBI ATTAAT 1 cut(s) 693
PsiI TTATAA 2 cut(s) 494, 791
Psp1406I AACGTT 1 cut(s) 1071
Psp6I CCWGG 6 cut(s) 169, 325, 503, 598, 796, 838
PspEI GGTNACC 2 cut(s) 719, 779
PspFI CCCAGC 1 cut(s) 1176
PspGI CCWGG 6 cut(s) 169, 325, 503, 598, 796, 838
PspN4I GGNNCC 2 cut(s) 424, 754
PspPI GGNCC 2 cut(s) 173, 293
PspXI VCTCGAGB 1 cut(s) 871
PsuI RGATCY 1 cut(s) 604
PsyI GACNNNGTC 1 cut(s) 905
RsaI GTAC 4 cut(s) 302, 509, 986, 1120
RsaNI GTAC 4 cut(s) 301, 508, 985, 1119
RseI CAYNNNNRTG 4 cut(s) 90, 255, 573, 909
SaqAI TTAA 3 cut(s) 213, 693, 1026
SatI GCNGC 2 cut(s) 858, 1002
Sau3AI GATC 2 cut(s) 604, 1141
Sau96I GGNCC 2 cut(s) 173, 293
SchI GAGTC 1 cut(s) 1033
ScrFI CCNGG 6 cut(s) 171, 327, 505, 600, 798, 840
SfaNI GCATC 2 cut(s) 509, 565
SfcI CTRYAG 1 cut(s) 1219
Sfr274I CTCGAG 1 cut(s) 871
SinI GGWCC 2 cut(s) 173, 293
SlaI CTCGAG 1 cut(s) 871
SmiMI CAYNNNNRTG 4 cut(s) 90, 255, 573, 909
SmlI CTYRAG 1 cut(s) 871
SmoI CTYRAG 1 cut(s) 871
SphI GCATGC 1 cut(s) 389
Sse9I AATT 4 cut(s) 334, 495, 1010, 1023
SsiI CCGC 2 cut(s) 441, 713
SspI AATATT 1 cut(s) 691
SspMI CTAG 4 cut(s) 746, 785, 861, 926
StyD4I CCNGG 6 cut(s) 169, 325, 503, 598, 796, 838
StyI CCWWGG 3 cut(s) 226, 281, 543
TaaI ACNGT 7 cut(s) 8, 164, 205, 415, 638, 736, 1096
TaiI ACGT 2 cut(s) 909, 1074
TaqI TCGA 5 cut(s) 10, 640, 822, 872, 900
TasI AATT 4 cut(s) 334, 495, 1010, 1023
TatI WGTACW 3 cut(s) 300, 984, 1118
Tru1I TTAA 3 cut(s) 213, 693, 1026
Tru9I TTAA 3 cut(s) 213, 693, 1026
TscAI CASTG 3 cut(s) 257, 317, 739
TseFI GTSAC 2 cut(s) 395, 719
TseI GCWGC 2 cut(s) 857, 1001
Tsp45I GTSAC 2 cut(s) 395, 719
TspDTI ATGAA 7 cut(s) 17, 209, 407, 897, 1078, 1118, 1122
TspGWI ACGGA 3 cut(s) 662, 669, 1154
TspRI CASTG 3 cut(s) 257, 317, 739
Tth111I GACNNNGTC 1 cut(s) 905
VpaK11BI GGWCC 2 cut(s) 173, 293
VspI ATTAAT 1 cut(s) 693
XagI CCTNNNNNAGG 1 cut(s) 1219
XapI RAATTY 2 cut(s) 334, 1010
XceI RCATGY 1 cut(s) 389
XcmI CCANNNNNNNNNTGG 2 cut(s) 233, 279
XhoI CTCGAG 1 cut(s) 871
XspI CTAG 4 cut(s) 746, 785, 861, 926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.