Rroxscaffold_2G00094270

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000320
Physical Location & Seq
Forward (+)
15583845 .. 15584614
770 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00094270.1

Sequence Viewer

Length: 609 bp
ATGGTTTTATTTCACTTGAGAATTGGTTTTGATGGATCTTTATATACATGTAGGAACATAAGCGAGCCGGTTTATGAAACAGATTTTCCAGACGAGCCACCTACTTATTTTAACTTCACTGAAATAGCGATGACACTAGATCGAGTGTTAACAGTCCAAGGGACAAGGGTCAAGGTGCTAGAATATAATGAAACAGTTGAGATGGTGTTTCAAGGAACTGATGTGATGGGAGGTTCCGTGAATCATCCAATGCACTTGCATGGACATAGCTTTTATGTGCTTGGATTTGGCTTTGGGGATTTCTTGGCCGAGAGAGACTCAAAAGGTTATAATTTGATTGATCCTCCTTACGTAACAACGTTTATAACTCCCAAAAACGGATGGTTAACCATAAGATTTGTAGCGAATAATCCAGGTGTGTGGTTTTGGCATTGTCACATGGAGAGACACTTGACATGGGGTATGGAGTCTGCTTTTATAGTGAAGAACGGGGGTTCAACTGAGACTAATATGCTCGGTCCTCCAGCTATCTTGCCTTCCTGTGATGTTCCATTGGATTCTGCTACAATCCTAAGTCACGCAAAATTGATTAAGAATCAAATAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

202

Amino Acids

22.83

Weight (kDa)

5.39

Isoelectric Point (pI)

36.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_2 PF07731 28 - 163 1.5e-39 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000320)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g12640 FvH4_2g18980 FvH4_2g18990 FvH4_2g40270 FvH4_2g40270 FvH4_4g22740 FvH4_4g22740 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g36460 FvH4_5g36460 FvH4_6g39950 FvH4_6g39970 FvH4_6g39983 FvH4_6g39990
rosa_chinensis RchiOBHm_Chr2g0154481 RchiOBHm_Chr2g0154511 RchiOBHm_Chr4g0428961 RchiOBHm_Chr6g0252431 RchiOBHm_Chr6g0273301 RchiOBHm_Chr6g0273631 RchiOBHm_Chr6g0273651 RchiOBHm_Chr6g0284751 RchiOBHm_Chr6g0284761 RchiOBHm_Chr6g0300491 RchiOBHm_Chr7g0237421 RchiOBHm_Chr7g0238581
rosa_laevigata RLG00000000906 RLG00000001006 RLG00000007110 RLG00000011333 RLG00000012721 RLG00000013605 RLG00000013626 RLG00000020780 RLG00000020782 RLG00000020783 RLG00000020786
rosa_multiflora Rmu_co8321753.1_g000001 Rmu_sc0000239.1_g000020 Rmu_sc0000686.1_g000001 Rmu_sc0000686.1_g000003 Rmu_sc0000686.1_g000005 Rmu_sc0001476.1_g000011 Rmu_sc0002231.1_g000002 Rmu_sc0002231.1_g000016 Rmu_sc0002690.1_g000003 Rmu_sc0002717.1_g000015 Rmu_sc0002923.1_g000026 Rmu_sc0003808.1_g000016 Rmu_sc0006475.1_g000008 Rmu_sc0006475.1_g000012 Rmu_sc0006475.1_g000018 Rmu_sc0014815.1_g000004 Rmu_sc0015313.1_g000012
rosa_roxburghii Rroxscaffold_2G00094270 Rroxscaffold_2G00094290 Rroxscaffold_3G00222950 Rroxscaffold_3G00224250 Rroxscaffold_5G00370630 Rroxscaffold_7G00167740 Rroxscaffold_7G00184410 Rroxscaffold_7G00195190 Rroxscaffold_7G00195460
rosa_rugosa Rorug02G0444600 Rorug04G0231100 Rorug04G0231200 Rorug06G0074000 Rorug06G0076800 Rorug06G0166400 Rorug06G0166500 Rorug06G0166600 Rorug06G0296400 Rorug07G0303000
rosa_samantha Rh2CG494600 Rh2CG494700 Rh2DG530800 Rh2DG530900 Rh2DG531000 Rh4AG287500 Rh4AG403800 Rh4BG293400 Rh4BG415100 Rh4DG290500 Rh6AG191000 Rh6AG191300 Rh6BG192500 Rh6BG194800 Rh6BG195200 Rh6BG279500 Rh6BG279600 Rh6DG183900 Rh6DG186600 Rh6DG274300 Rh6DG274500 Rh6DG409500 Rh7AG460600 Rh7AG468200 Rh7BG430200
rosa_wichuraiana Rw2G041820 Rw2G041830 Rw2G041840 Rw4G024930 Rw6G016470 Rw6G016720 Rw6G016730 Rw6G024020 Rw6G024030 Rw6G035790 Rw7G038130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 330, 365
AclI AACGTT 1 cut(s) 359
AclWI GGATC 2 cut(s) 43, 335
AcoI YGGCCR 1 cut(s) 306
AfiI CCNNNNNNNGG 1 cut(s) 377
AflIII ACRYGT 1 cut(s) 47
AgsI TTSAA 2 cut(s) 212, 498
AjnI CCWGG 1 cut(s) 412
AluBI AGCT 2 cut(s) 270, 527
AluI AGCT 2 cut(s) 270, 527
Alw26I GTCTC 3 cut(s) 309, 439, 497
AlwI GGATC 2 cut(s) 43, 335
AoxI GGCC 1 cut(s) 306
AspS9I GGNCC 1 cut(s) 518
AvaII GGWCC 1 cut(s) 518
BccI CCATC 4 cut(s) 26, 196, 220, 375
BciT130I CCWGG 1 cut(s) 414
BcoDI GTCTC 3 cut(s) 309, 439, 497
BfaI CTAG 2 cut(s) 137, 179
Bme1390I CCNGG 1 cut(s) 414
Bme18I GGWCC 1 cut(s) 518
BmgT120I GGNCC 1 cut(s) 518
BmiI GGNNCC 1 cut(s) 235
BmrFI CCNGG 1 cut(s) 414
BoxI GACNNNNGTC 1 cut(s) 167
BplI GAGNNNNNCTC 2 cut(s) 302, 334
BpmI CTGGAG 1 cut(s) 507
BpuEI CTTGAG 1 cut(s) 37
BsaAI YACGTR 1 cut(s) 352
BsaJI CCNNGG 1 cut(s) 157
BsaXI ACNNNNNCTCC 2 cut(s) 222, 252
Bsc4I CCNNNNNNNGG 1 cut(s) 377
Bse118I RCCGGY 1 cut(s) 67
BseBI CCWGG 1 cut(s) 414
BseDI CCNNGG 1 cut(s) 157
BseGI GGATG 2 cut(s) 244, 386
BseLI CCNNNNNNNGG 1 cut(s) 377
BseMII CTCAG 1 cut(s) 492
BshFI GGCC 1 cut(s) 308
BsiSI CCGG 1 cut(s) 68
BslFI GGGAC 1 cut(s) 175
BslI CCNNNNNNNGG 1 cut(s) 377
BsmAI GTCTC 3 cut(s) 309, 439, 497
BsmFI GGGAC 1 cut(s) 175
BsnI GGCC 1 cut(s) 308
Bsp143I GATC 3 cut(s) 35, 139, 340
BspANI GGCC 1 cut(s) 308
BspCNI CTCAG 1 cut(s) 493
BspLI GGNNCC 1 cut(s) 235
BspPI GGATC 2 cut(s) 43, 335
BsrFI RCCGGY 1 cut(s) 67
BssAI RCCGGY 1 cut(s) 67
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 3 cut(s) 35, 139, 340
BssT1I CCWWGG 1 cut(s) 157
Bst2UI CCWGG 1 cut(s) 414
Bst4CI ACNGT 2 cut(s) 154, 196
BstBAI YACGTR 1 cut(s) 352
BstC8I GCNNGC 1 cut(s) 65
BstDEI CTNAG 2 cut(s) 501, 572
BstF5I GGATG 2 cut(s) 244, 386
BstKTI GATC 3 cut(s) 38, 142, 343
BstMAI GTCTC 3 cut(s) 309, 439, 497
BstMBI GATC 3 cut(s) 35, 139, 340
BstNI CCWGG 1 cut(s) 414
BstNSI RCATGY 1 cut(s) 51
BstPAI GACNNNNGTC 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 412
BstSNI TACGTA 1 cut(s) 352
BstX2I RGATCY 1 cut(s) 35
BstXI CCANNNNNNTGG 1 cut(s) 420
BstYI RGATCY 1 cut(s) 35
BsuRI GGCC 1 cut(s) 308
BtgZI GCGATG 1 cut(s) 143
BtsCI GGATG 2 cut(s) 244, 386
BtsIMutI CAGTG 1 cut(s) 117
Cac8I GCNNGC 1 cut(s) 65
Cfr10I RCCGGY 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 518
CviAII CATG 4 cut(s) 48, 260, 439, 456
CviJI RGCY 6 cut(s) 67, 97, 270, 291, 308, 527
CviKI_1 RGCY 6 cut(s) 67, 97, 270, 291, 308, 527
DdeI CTNAG 2 cut(s) 501, 572
DpnI GATC 3 cut(s) 37, 141, 342
DpnII GATC 3 cut(s) 35, 139, 340
EaeI YGGCCR 1 cut(s) 306
Eco105I TACGTA 1 cut(s) 352
Eco130I CCWWGG 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 518
EcoRII CCWGG 1 cut(s) 412
EcoT14I CCWWGG 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 4 cut(s) 51, 263, 442, 459
FaqI GGGAC 1 cut(s) 175
FatI CATG 4 cut(s) 47, 259, 438, 455
FokI GGATG 2 cut(s) 231, 393
FspBI CTAG 2 cut(s) 137, 179
GsuI CTGGAG 1 cut(s) 507
HaeIII GGCC 1 cut(s) 308
HapII CCGG 1 cut(s) 68
Hin1II CATG 4 cut(s) 51, 263, 442, 459
HincII GTYRAC 2 cut(s) 150, 387
HindII GTYRAC 2 cut(s) 150, 387
HinfI GANTC 5 cut(s) 241, 317, 467, 557, 595
HpaI GTTAAC 2 cut(s) 150, 387
HpaII CCGG 1 cut(s) 68
Hpy166II GTNNAC 2 cut(s) 150, 387
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 2 cut(s) 150, 387
HpyAV CCTTC 1 cut(s) 546
HpyCH4III ACNGT 2 cut(s) 154, 196
HpyCH4IV ACGT 2 cut(s) 351, 359
HpyCH4V TGCA 2 cut(s) 253, 259
HpyF3I CTNAG 2 cut(s) 501, 572
HpySE526I ACGT 2 cut(s) 351, 359
Hsp92II CATG 4 cut(s) 51, 263, 442, 459
KspAI GTTAAC 2 cut(s) 150, 387
Kzo9I GATC 3 cut(s) 35, 139, 340
LpnPI CCDG 6 cut(s) 81, 102, 399, 426, 537, 553
MaeI CTAG 2 cut(s) 137, 179
MaeII ACGT 2 cut(s) 351, 359
MaeIII GTNAC 3 cut(s) 352, 434, 575
MalI GATC 3 cut(s) 37, 141, 342
MboI GATC 3 cut(s) 35, 139, 340
MboII GAAGA 1 cut(s) 496
MflI RGATCY 1 cut(s) 35
MluCI AATT 3 cut(s) 21, 331, 584
MlyI GAGTC 2 cut(s) 311, 476
MnlI CCTC 3 cut(s) 224, 354, 531
MseI TTAA 4 cut(s) 111, 149, 386, 591
MslI CAYNNNNRTG 1 cut(s) 258
MspI CCGG 1 cut(s) 68
MspR9I CCNGG 1 cut(s) 414
MvaI CCWGG 1 cut(s) 414
NdeII GATC 3 cut(s) 35, 139, 340
NlaIII CATG 4 cut(s) 51, 263, 442, 459
NlaIV GGNNCC 1 cut(s) 235
NmeAIII GCCGAG 1 cut(s) 334
NmuCI GTSAC 2 cut(s) 434, 575
NspI RCATGY 1 cut(s) 51
PciI ACATGT 1 cut(s) 47
PfeI GAWTC 3 cut(s) 241, 557, 595
PleI GAGTC 2 cut(s) 311, 475
PpsI GAGTC 2 cut(s) 311, 475
Ppu21I YACGTR 1 cut(s) 352
PscI ACATGT 1 cut(s) 47
PshAI GACNNNNGTC 1 cut(s) 167
PsiI TTATAA 2 cut(s) 330, 365
Psp1406I AACGTT 1 cut(s) 359
Psp6I CCWGG 1 cut(s) 412
PspGI CCWGG 1 cut(s) 412
PspN4I GGNNCC 1 cut(s) 235
PspPI GGNCC 1 cut(s) 518
PsuI RGATCY 1 cut(s) 35
RseI CAYNNNNRTG 1 cut(s) 258
SaqAI TTAA 4 cut(s) 111, 149, 386, 591
Sau3AI GATC 3 cut(s) 35, 139, 340
Sau96I GGNCC 1 cut(s) 518
SchI GAGTC 2 cut(s) 311, 476
ScrFI CCNGG 1 cut(s) 414
SetI ASST 9 cut(s) 103, 177, 235, 272, 328, 354, 362, 418, 529
SinI GGWCC 1 cut(s) 518
SmiMI CAYNNNNRTG 1 cut(s) 258
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
SnaBI TACGTA 1 cut(s) 352
Sse9I AATT 3 cut(s) 21, 331, 584
SspMI CTAG 2 cut(s) 137, 179
StyD4I CCNGG 1 cut(s) 412
StyI CCWWGG 1 cut(s) 157
TaaI ACNGT 2 cut(s) 154, 196
TaiI ACGT 2 cut(s) 354, 362
TaqI TCGA 1 cut(s) 142
TaqII GACCGA 1 cut(s) 506
TasI AATT 3 cut(s) 21, 331, 584
TfiI GAWTC 3 cut(s) 241, 557, 595
Tru1I TTAA 4 cut(s) 111, 149, 386, 591
Tru9I TTAA 4 cut(s) 111, 149, 386, 591
TscAI CASTG 1 cut(s) 124
TseFI GTSAC 2 cut(s) 434, 575
Tsp45I GTSAC 2 cut(s) 434, 575
TspDTI ATGAA 2 cut(s) 90, 204
TspGWI ACGGA 2 cut(s) 226, 393
TspRI CASTG 1 cut(s) 124
VpaK11BI GGWCC 1 cut(s) 518
XceI RCATGY 1 cut(s) 51
XspI CTAG 2 cut(s) 137, 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.