Rmu_co8321753.1_g000001

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8321753.1
OG0000320
Physical Location & Seq
Reverse (-)
2 .. 929
928 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8321753.1_g000001.1.cds

Sequence Viewer

Length: 639 bp
atggtttcaccattcactggcaagtcccatcacacgacctcccctatctgtttagtgcatggagtaaagcaaccaagaaatccatggtttgatggcccagaatatgtgacacaatgcccaatatcaccgggaacaaattttacctatcaagttcagttgaccacagaagaaggaactctgtggtggcatgctcatagtgactggactagggcaagcgttcacggtgccattgtcatcttgcctgctcttggaacaacatttccatttcctgagcctgatgaagaggagatcattgtgttcggatcttggtatttgggaaatttgaaagaacaggttgacgagtgtctggaccctgcaaccaactctaacttacccatagcagctggttacacaattaatggccggcttggagatttttctccatgctccaaaaatacaacgtatcgtcgtaaggtggactatggcaagacatatcttcttcggatagtgaacgcaaacatcgatgtagagttttactttgccattgctgaacacaacctcactgtggttggcttggacggctcctataccaaacccatcaacacaggctatatagtgatagcccctggacaaacaatggacgtgttgctcaacacaaat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

213

Amino Acids

23.67

Weight (kDa)

5.25

Isoelectric Point (pI)

34.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000320)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g12640 FvH4_2g18980 FvH4_2g18990 FvH4_2g40270 FvH4_2g40270 FvH4_4g22740 FvH4_4g22740 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g36460 FvH4_5g36460 FvH4_6g39950 FvH4_6g39970 FvH4_6g39983 FvH4_6g39990
rosa_chinensis RchiOBHm_Chr2g0154481 RchiOBHm_Chr2g0154511 RchiOBHm_Chr4g0428961 RchiOBHm_Chr6g0252431 RchiOBHm_Chr6g0273301 RchiOBHm_Chr6g0273631 RchiOBHm_Chr6g0273651 RchiOBHm_Chr6g0284751 RchiOBHm_Chr6g0284761 RchiOBHm_Chr6g0300491 RchiOBHm_Chr7g0237421 RchiOBHm_Chr7g0238581
rosa_laevigata RLG00000000906 RLG00000001006 RLG00000007110 RLG00000011333 RLG00000012721 RLG00000013605 RLG00000013626 RLG00000020780 RLG00000020782 RLG00000020783 RLG00000020786
rosa_multiflora Rmu_co8321753.1_g000001 Rmu_sc0000239.1_g000020 Rmu_sc0000686.1_g000001 Rmu_sc0000686.1_g000003 Rmu_sc0000686.1_g000005 Rmu_sc0001476.1_g000011 Rmu_sc0002231.1_g000002 Rmu_sc0002231.1_g000016 Rmu_sc0002690.1_g000003 Rmu_sc0002717.1_g000015 Rmu_sc0002923.1_g000026 Rmu_sc0003808.1_g000016 Rmu_sc0006475.1_g000008 Rmu_sc0006475.1_g000012 Rmu_sc0006475.1_g000018 Rmu_sc0014815.1_g000004 Rmu_sc0015313.1_g000012
rosa_roxburghii Rroxscaffold_2G00094270 Rroxscaffold_2G00094290 Rroxscaffold_3G00222950 Rroxscaffold_3G00224250 Rroxscaffold_5G00370630 Rroxscaffold_7G00167740 Rroxscaffold_7G00184410 Rroxscaffold_7G00195190 Rroxscaffold_7G00195460
rosa_rugosa Rorug02G0444600 Rorug04G0231100 Rorug04G0231200 Rorug06G0074000 Rorug06G0076800 Rorug06G0166400 Rorug06G0166500 Rorug06G0166600 Rorug06G0296400 Rorug07G0303000
rosa_samantha Rh2CG494600 Rh2CG494700 Rh2DG530800 Rh2DG530900 Rh2DG531000 Rh4AG287500 Rh4AG403800 Rh4BG293400 Rh4BG415100 Rh4DG290500 Rh6AG191000 Rh6AG191300 Rh6BG192500 Rh6BG194800 Rh6BG195200 Rh6BG279500 Rh6BG279600 Rh6DG183900 Rh6DG186600 Rh6DG274300 Rh6DG274500 Rh6DG409500 Rh7AG460600 Rh7AG468200 Rh7BG430200
rosa_wichuraiana Rw2G041820 Rw2G041830 Rw2G041840 Rw4G024930 Rw6G016470 Rw6G016720 Rw6G016730 Rw6G024020 Rw6G024030 Rw6G035790 Rw7G038130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 224
AccB7I CCANNNNNTGG 1 cut(s) 17
AclWI GGATC 1 cut(s) 310
AcoI YGGCCR 1 cut(s) 400
AcsI RAATTY 2 cut(s) 136, 319
AfiI CCNNNNNNNGG 3 cut(s) 17, 248, 544
AflIII ACRYGT 1 cut(s) 621
AgsI TTSAA 1 cut(s) 325
AjiI CACGTC 1 cut(s) 622
AjnI CCWGG 1 cut(s) 604
AloI GAACNNNNNNTCC 2 cut(s) 244, 276
AluBI AGCT 1 cut(s) 383
AluI AGCT 1 cut(s) 383
AlwI GGATC 1 cut(s) 310
AoxI GGCC 2 cut(s) 94, 400
ApeKI GCWGC 1 cut(s) 380
ApoI RAATTY 2 cut(s) 136, 319
AseI ATTAAT 1 cut(s) 396
AspS9I GGNCC 2 cut(s) 95, 349
AsuC2I CCSGG 1 cut(s) 129
AsuHPI GGTGA 1 cut(s) 117
AvaII GGWCC 1 cut(s) 349
BanI GGYRCC 1 cut(s) 224
BbvI GCAGC 1 cut(s) 392
BccI CCATC 3 cut(s) 36, 86, 584
BceAI ACGGC 1 cut(s) 574
BciT130I CCWGG 1 cut(s) 606
BcnI CCSGG 1 cut(s) 129
BfaI CTAG 1 cut(s) 207
BisI GCNGC 1 cut(s) 381
BlsI GCNGC 1 cut(s) 382
Bme1390I CCNGG 2 cut(s) 129, 606
Bme18I GGWCC 1 cut(s) 349
BmgBI CACGTC 1 cut(s) 622
BmgT120I GGNCC 2 cut(s) 95, 349
BmiI GGNNCC 3 cut(s) 226, 351, 562
BmrFI CCNGG 2 cut(s) 129, 606
BoxI GACNNNNGTC 1 cut(s) 342
Bpu10I CCTNAGC 1 cut(s) 270
BpuMI CCSGG 1 cut(s) 129
Bsa29I ATCGAT 1 cut(s) 501
BsaJI CCNNGG 2 cut(s) 83, 604
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 248, 544
Bse118I RCCGGY 1 cut(s) 402
Bse1I ACTGG 2 cut(s) 22, 206
Bse3DI GCAATG 1 cut(s) 522
BseBI CCWGG 1 cut(s) 606
BseCI ATCGAT 1 cut(s) 501
BseDI CCNNGG 2 cut(s) 83, 604
BseLI CCNNNNNNNGG 3 cut(s) 17, 248, 544
BseMI GCAATG 1 cut(s) 522
BseMII CTCAG 1 cut(s) 261
BseNI ACTGG 2 cut(s) 22, 206
BseRI GAGGAG 1 cut(s) 299
BseXI GCAGC 1 cut(s) 392
BshFI GGCC 2 cut(s) 96, 402
BshNI GGYRCC 1 cut(s) 224
BshVI ATCGAT 1 cut(s) 501
BsiSI CCGG 2 cut(s) 128, 403
BslFI GGGAC 1 cut(s) 10
BslI CCNNNNNNNGG 3 cut(s) 17, 248, 544
BsmFI GGGAC 1 cut(s) 10
BsnI GGCC 2 cut(s) 96, 402
Bsp143I GATC 2 cut(s) 288, 302
Bsp19I CCATGG 1 cut(s) 83
BspANI GGCC 2 cut(s) 96, 402
BspCNI CTCAG 1 cut(s) 262
BspDI ATCGAT 1 cut(s) 501
BspLI GGNNCC 3 cut(s) 226, 351, 562
BspPI GGATC 1 cut(s) 310
BspT107I GGYRCC 1 cut(s) 224
BsrDI GCAATG 1 cut(s) 522
BsrFI RCCGGY 1 cut(s) 402
BsrI ACTGG 2 cut(s) 22, 206
BssAI RCCGGY 1 cut(s) 402
BssECI CCNNGG 2 cut(s) 83, 604
BssMI GATC 2 cut(s) 288, 302
BssT1I CCWWGG 1 cut(s) 83
Bst2UI CCWGG 1 cut(s) 606
Bst4CI ACNGT 2 cut(s) 224, 544
Bst6I CTCTTC 1 cut(s) 276
BstC8I GCNNGC 4 cut(s) 189, 214, 243, 404
BstDEI CTNAG 1 cut(s) 270
BstDSI CCRYGG 1 cut(s) 83
BstKTI GATC 2 cut(s) 291, 305
BstMBI GATC 2 cut(s) 288, 302
BstMWI GCNNNNNNNGC 1 cut(s) 558
BstNI CCWGG 1 cut(s) 606
BstNSI RCATGY 1 cut(s) 191
BstPAI GACNNNNGTC 1 cut(s) 342
BstSCI CCNGG 2 cut(s) 127, 604
BstV1I GCAGC 1 cut(s) 392
BstX2I RGATCY 1 cut(s) 302
BstYI RGATCY 1 cut(s) 302
Bsu15I ATCGAT 1 cut(s) 501
BsuRI GGCC 2 cut(s) 96, 402
BsuTUI ATCGAT 1 cut(s) 501
BtgI CCRYGG 1 cut(s) 83
BtrI CACGTC 1 cut(s) 622
BtsIMutI CAGTG 2 cut(s) 15, 540
Cac8I GCNNGC 4 cut(s) 189, 214, 243, 404
Cfr10I RCCGGY 1 cut(s) 402
Cfr13I GGNCC 2 cut(s) 95, 349
ClaI ATCGAT 1 cut(s) 501
CviAII CATG 4 cut(s) 59, 84, 188, 423
CviJI RGCY 9 cut(s) 96, 274, 383, 402, 406, 552, 561, 588, 602
CviKI_1 RGCY 9 cut(s) 96, 274, 383, 402, 406, 552, 561, 588, 602
DdeI CTNAG 1 cut(s) 270
DpnI GATC 2 cut(s) 290, 304
DpnII GATC 2 cut(s) 288, 302
EaeI YGGCCR 1 cut(s) 400
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
Eco130I CCWWGG 1 cut(s) 83
Eco47I GGWCC 1 cut(s) 349
EcoRII CCWGG 1 cut(s) 604
EcoT14I CCWWGG 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 83
FaeI CATG 4 cut(s) 62, 87, 191, 426
FaqI GGGAC 1 cut(s) 10
FatI CATG 4 cut(s) 58, 83, 187, 422
Fnu4HI GCNGC 1 cut(s) 381
Fsp4HI GCNGC 1 cut(s) 381
FspBI CTAG 1 cut(s) 207
GluI GCNGC 1 cut(s) 381
HaeIII GGCC 2 cut(s) 96, 402
HapII CCGG 2 cut(s) 128, 403
Hin1II CATG 4 cut(s) 62, 87, 191, 426
HincII GTYRAC 2 cut(s) 159, 337
HindII GTYRAC 2 cut(s) 159, 337
HpaII CCGG 2 cut(s) 128, 403
HphI GGTGA 1 cut(s) 117
Hpy166II GTNNAC 5 cut(s) 159, 220, 337, 457, 490
Hpy188I TCNGA 2 cut(s) 302, 483
Hpy188III TCNNGA 2 cut(s) 269, 347
Hpy8I GTNNAC 5 cut(s) 159, 220, 337, 457, 490
Hpy99I CGWCG 1 cut(s) 450
HpyAV CCTTC 1 cut(s) 164
HpyCH4III ACNGT 2 cut(s) 224, 544
HpyCH4IV ACGT 2 cut(s) 440, 621
HpyCH4V TGCA 2 cut(s) 58, 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 558
HpyF3I CTNAG 1 cut(s) 270
HpySE526I ACGT 2 cut(s) 440, 621
Hsp92II CATG 4 cut(s) 62, 87, 191, 426
KroI GCCGGC 1 cut(s) 402
KroNI GCCGGC 1 cut(s) 404
Kzo9I GATC 2 cut(s) 288, 302
LmnI GCTCC 2 cut(s) 431, 566
Lsp1109I GCAGC 1 cut(s) 392
MaeI CTAG 1 cut(s) 207
MaeII ACGT 2 cut(s) 440, 621
MaeIII GTNAC 3 cut(s) 106, 197, 386
MalI GATC 2 cut(s) 290, 304
MboI GATC 2 cut(s) 288, 302
MboII GAAGA 4 cut(s) 179, 293, 467, 470
MflI RGATCY 1 cut(s) 302
MluCI AATT 3 cut(s) 136, 319, 393
MnlI CCTC 3 cut(s) 49, 277, 548
MroNI GCCGGC 1 cut(s) 402
MseI TTAA 1 cut(s) 396
MspA1I CMGCKG 1 cut(s) 383
MspI CCGG 2 cut(s) 128, 403
MspR9I CCNGG 2 cut(s) 129, 606
MvaI CCWGG 1 cut(s) 606
MwoI GCNNNNNNNGC 1 cut(s) 558
NaeI GCCGGC 1 cut(s) 404
NciI CCSGG 1 cut(s) 129
NcoI CCATGG 1 cut(s) 83
NdeII GATC 2 cut(s) 288, 302
NgoMIV GCCGGC 1 cut(s) 402
NlaIII CATG 4 cut(s) 62, 87, 191, 426
NlaIV GGNNCC 3 cut(s) 226, 351, 562
NmuCI GTSAC 2 cut(s) 106, 197
NspI RCATGY 1 cut(s) 191
PaeI GCATGC 1 cut(s) 191
PcsI WCGNNNNNNNCGW 1 cut(s) 498
PdiI GCCGGC 1 cut(s) 404
PflMI CCANNNNNTGG 1 cut(s) 17
PkrI GCNGC 1 cut(s) 382
PshAI GACNNNNGTC 1 cut(s) 342
PshBI ATTAAT 1 cut(s) 396
Psp6I CCWGG 1 cut(s) 604
PspGI CCWGG 1 cut(s) 604
PspN4I GGNNCC 3 cut(s) 226, 351, 562
PspPI GGNCC 2 cut(s) 95, 349
PsrI GAACNNNNNNTAC 2 cut(s) 124, 156
PsuI RGATCY 1 cut(s) 302
PvuII CAGCTG 1 cut(s) 383
SaqAI TTAA 1 cut(s) 396
SatI GCNGC 1 cut(s) 381
Sau3AI GATC 2 cut(s) 288, 302
Sau96I GGNCC 2 cut(s) 95, 349
ScrFI CCNGG 2 cut(s) 129, 606
SetI ASST 8 cut(s) 41, 146, 336, 385, 443, 456, 540, 624
SinI GGWCC 1 cut(s) 349
SphI GCATGC 1 cut(s) 191
Sse9I AATT 3 cut(s) 136, 319, 393
SspMI CTAG 1 cut(s) 207
StyD4I CCNGG 2 cut(s) 127, 604
StyI CCWWGG 1 cut(s) 83
TaaI ACNGT 2 cut(s) 224, 544
TaiI ACGT 2 cut(s) 443, 624
TaqI TCGA 1 cut(s) 501
TasI AATT 3 cut(s) 136, 319, 393
Tru1I TTAA 1 cut(s) 396
Tru9I TTAA 1 cut(s) 396
TscAI CASTG 2 cut(s) 22, 547
TseFI GTSAC 2 cut(s) 106, 197
TseI GCWGC 1 cut(s) 380
Tsp45I GTSAC 2 cut(s) 106, 197
TspDTI ATGAA 1 cut(s) 294
TspRI CASTG 2 cut(s) 22, 547
Van91I CCANNNNNTGG 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 349
VspI ATTAAT 1 cut(s) 396
XapI RAATTY 2 cut(s) 136, 319
XceI RCATGY 1 cut(s) 191
XcmI CCANNNNNNNNNTGG 1 cut(s) 81
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.